Jie Liang

Also affiliated with Illinois College, University of Illinois Chicago

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.279Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

ChromPolymerDB: a high-resolution database of single-cell 3D chromatin structures for functional genomics

Nucleic Acids Research(2025)10.1093/nar/gkaf1233

Top 67%

0.176DataRank

Top 67%2 citations

Lin Du, Siyuan Zhao, Bowei Ye, Pourya Delafrouz, Hammad Farooq +7 more

Papers

Driven by 29 papers — median percentile 28. Top paper: “ChromPolymerDB: a high-resolution database of single-cell 3D chromatin structures for functional genomics”.

ChromPolymerDB: a high-resolution database of single-cell 3D chromatin structures for functional genomics

Nucleic Acids Research(2025)10.1093/nar/gkaf1233

Top 67%

0.176DataRank

Top 67%2 citations

Lin Du, Siyuan Zhao, Bowei Ye, Pourya Delafrouz, Hammad Farooq +7 more

ChromPolymerDB: A High-Resolution Database of Single-Cell 3D Chromatin Structures for Functional Genomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.27.678816

Top 78%

0.104DataRank

Top 78%1 citations

Lin Du, Siyuan Zhao, Bowei Ye, Pourya Delafrouz, Hammad Farooq +7 more

High-resolution single-cell 3D-models of chromatin ensembles during Drosophila embryogenesis

Nature Communications(2021)10.1038/s41467-020-20490-9

N/A

0DataRank · unranked

34 citations

Alan Perez-Rathke, Daniel M. Czajkowsky, Zhifeng Shao, Jie Liang, Qiu Sun

Minimalistic 3D chromatin models: Sparse interactions in single cells drive the chromatin fold and form many-body units

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.06.017

N/A

0DataRank · unranked

20 citations

Alan Perez-Rathke, Jie Liang

Loop extrusion promotes an alternate pathway for isotype switching

Cell Reports(2021)10.1016/j.celrep.2021.110059

N/A

0DataRank · unranked

17 citations

Robert Wuerffel, José Fernando Cantillo, Saurabh Priyadarshi, Xue Lei, Jie Liang +3 more

Exact Probability Landscapes of Stochastic Phenotype Switching in Feed-Forward Loops: Phase Diagrams of Multimodality

Frontiers in Genetics(2021)10.3389/fgene.2021.645640

N/A

0DataRank · unranked

8 citations

Farid Manuchehrfar, Youfang Cao, Jie Liang, Anna Terebus

Modeling and simulation of cell nuclear architecture reorganization process

Journal of Computational Physics(2021)10.1016/j.jcp.2021.110808

N/A

0DataRank · unranked

7 citations

Pourya Delafrouz, Jie Liang, Chun Liu, Jie Shen, Qing Cheng

Minimalistic 3D Chromatin Models: Sparse Interactions in Single Cells Drive the Chromatin Fold and Form Many-Body Units

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.06.455444

N/A

0DataRank · unranked

1 citations

Alan Perez-Rathke, Jie Liang

Reactive Vortexes in a Naturally Activated Process: Non-Diffusive Rotational Fluxes at Transition State Uncovered by Persistent Homology

The Journal of Physical Chemistry B(2022)10.1021/acs.jpcb.2c07015

N/A

0DataRank · unranked

5 citations

Huiyu Li, Ao Ma, Jie Liang, Farid Manuchehrfar

Thermodynamics of unfolding mechanisms of mouse mammary tumor virus pseudoknot from a coarse-grained loop-entropy model

Journal of Biological Physics(2022)10.1007/s10867-022-09602-2

N/A

0DataRank · unranked

2 citations

Jorjethe Roca, Rong Chen, Anjum Ansari, Jie Liang, Ke Tang

An Igh novel enhancer modulates antigen receptor diversity by determining locus conformation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.23.492988

N/A

0DataRank · unranked

2 citations

Saurabh Priyardarshi, Sarah Naiyer, Xiaoyu Qu, Hammad Farooq, Eden Kleiman +9 more

Identifying Transient Cells During Reprogramming via Persistent Homology

2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC)(2022)10.1109/embc48229.2022.9871358

N/A

0DataRank · unranked

1 citations

Farid Manuchehrfar, Constantinos Chronis, Jie Liang, Aydolun Petenkaya

SPRI: Structure-Based Pathogenicity Relationship Identifier for Predicting Effects of Single Missense Variants and Discovery of Higher-Order Cancer Susceptibility Clusters of Mutations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.27.508720

N/A

0DataRank · unranked

1 citations

Xue Lei, Wei Tian, Alan Perez-Rathke, Yan Yuan Tseng, Jie Liang +1 more

Self-assembly of cellular neighborhoods converts stochastic signaling into sustained olfactory neurogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.05.506659

N/A

0DataRank · unranked

0 citations

Joseph N. Lombardo, Lynne M. Nacke, Farid Manuchehrfar, Kaelan Wong, Jocelyn Garcia +3 more

Thermodynamics of unfolding mechanisms of pseudoknotted RNA from a coarse-grained loop-entropy model and absorbance/fluorescence measurements

(2022)10.52843/cassyni.mbd4t3

N/A

0DataRank · unranked

0 citations

Jie Liang

An Igh distal enhancer modulates antigen receptor diversity by determining locus conformation

Nature Communications(2023)10.1038/s41467-023-36414-2

N/A

0DataRank · unranked

19 citations

Saurabh Priyadarshi, Sarah Naiyer, Xiaoyu Qu, Hammad Farooq, Eden Kleiman +9 more

Structure-based pathogenicity relationship identifier for predicting effects of single missense variants and discovery of higher-order cancer susceptibility clusters of mutations

Briefings in Bioinformatics(2023)10.1093/bib/bbad206

N/A

0DataRank · unranked

13 citations

Xue Lei, Wei Tian, Alan Perez-Rathke, Yan Yuan Tseng, Jie Liang +1 more

3D-BMPP: 3D Beta-Barrel Membrane Protein Predictor

Methods in molecular biology(2023)10.1007/978-1-0716-2974-1_17

N/A

0DataRank · unranked

1 citations

Meishan Lin, Ke Tang, Manisha Barse, Hammad Naveed, Jie Liang +1 more

Predicting Pathology of Missense Mutations through Protein-Specific Evolutionary Pattern

PubMed(2023)10.1109/embc40787.2023.10339993

N/A

0DataRank · unranked

6 citations

Boshen Wang, Jie Liang, Bowei Ye

CASTpFold: Computed Atlas of Surface Topography of the universe of protein Folds

Nucleic Acids Research(2024)10.1093/nar/gkae415

N/A

0DataRank · unranked

151 citations

Wei Tian, Boshen Wang, Jie Liang, Bowei Ye

Tubeimosides are pan-coronavirus and filovirus inhibitors that can block their fusion protein binding to Niemann-Pick C1

Nature Communications(2024)10.1038/s41467-023-44504-4

N/A

0DataRank · unranked

29 citations

Sunan Li, Lihong Tao, Chong Wang, Bowei Ye, Huiyu Li +13 more

Furin Egress from the TGN is Regulated by Membrane‐Associated RING‐CH Finger (MARCHF) Proteins and Ubiquitin‐Specific Protease 32 (USP32) via Nondegradable K33‐Polyubiquitination

Advanced Science(2024)10.1002/advs.202403732

N/A

0DataRank · unranked

11 citations

Iqbal Ahmad, You Wu, Lijie Tang, Ilyas Khan, Bowei Ye +4 more

Structural basis of differential gene expression at eQTLs loci from high-resolution ensemble models of 3D single-cell chromatin conformations

Bioinformatics(2025)10.1093/bioinformatics/btaf050

N/A

0DataRank · unranked

6 citations

Hammad Farooq, Pourya Delafrouz, Jie Liang, Lin Du

Exuberant long noncoding RNA expression may sculpt Igh locus topology

Frontiers in Immunology(2025)10.3389/fimmu.2025.1678105

N/A

0DataRank · unranked

1 citations

Sarah Naiyer, Xiaoyu Qu, Khalid Hussain Bhat, Hammad Farooq, Mark Maienschein‐Cline +3 more

Effects of Lamina-Chromatin Attachment on Super Long-Range Chromatin Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.13.638183

N/A

0DataRank · unranked

4 citations

Hammad Farooq, Lin Du, Ao Ma, Jie Liang, Pourya Delafrouz

ADAM17 is an HIV-1 Restriction Factor Antagonized by Nef

Research Square(2025)10.21203/rs.3.rs-6923186/v1

N/A

0DataRank · unranked

0 citations

Qiuchen Li, Sunan Li, Bowei Ye, Jie Liang, Yong‐Hui Zheng

Cell–substrate mechanics guide collective cell migration through intercellular adhesion: a dynamic finite element cellular model

Biomechanics and Modeling in Mechanobiology(2020)10.1007/s10237-020-01308-5

N/A

0DataRank · unranked

17 citations

Farid Manuchehrfar, Jie Liang, Jieling Zhao

Barrel expansion of outer membrane protein G nanopore through β‐hairpin duplication

Protein Science(2025)10.1002/pro.70203

N/A

0DataRank · unranked

0 citations

Bach Pham, Ryan Pham, Patrick Ryan, Nhu Tong, Jacqueline Sharp +5 more

CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells

Genome biology(2020)10.1186/s13059-019-1904-z

N/A

0DataRank · unranked

44 citations

Qiu Sun, Boshen Wang, Valentina Boeva, Zhifeng Shao, Jie Liang +1 more

Jie Liang

Indexed papers

Top data-sharing exemplar

Papers