Andrew Routh

Also affiliated with Scripps Institution of Oceanography, Scripps (United States), The University of Texas Medical Branch at Galveston

MedicineBiochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants”.

Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants

eLife(2021)10.7554/elife.68479

N/A

0.806DataRank · unranked

35 citations

Rose M. Langsjoen, Brooke Mitchell, Barbara M. Judy, Patrick C. Newman, Jessica A. Plante +19 more

Mouse-adapted SARS-CoV-2 protects animals from lethal SARS-CoV challenge

PLoS Biology(2021)10.1371/journal.pbio.3001284

N/A

0.673DataRank · unranked

88 citations

Michelle N. Vu, Bryan A. Johnson, Meredith E. Davis-Gardner, Abigail Vanderheiden, Kumari G. Lokugamage +14 more

Loss-of-function mutation in Omicron variants reduces spike protein expression and attenuates SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.17.536926

N/A

0.470DataRank · unranked

22 citations

R. Elias Alvarado, Dorothea R. Morris, Kumari G. Lokugamage, Yiyang Zhou, Angelica L. Morgan +15 more

Convergent evolution in nucleocapsid facilitated SARS-CoV-2 adaptation for human infection

Journal of Virology(2025)10.1128/jvi.02091-24

N/A

0.310DataRank · unranked

6 citations

Yiyang Zhou, R. Elias Alvarado, Jessica A. Plante, Yani P. Ahearn, Jennifer C. Chen +8 more

Microbial interactions in the mosquito gut determine Serratia colonization and blood feeding propensity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.14.039701

N/A

0DataRank · unranked

5 citations

Shivanand Hegde, Christopher M. Roundy, George Golovko, Miguel A. Saldaña, Charles E. Hart +12 more

Nanopore sequencing reveals full-length Tropomyosin 1 isoforms and their regulation by RNA binding proteins during rat heart development

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.30.229351

N/A

0DataRank · unranked

1 citations

Andrew Routh, Muge N. Kuyumcu‐Martinez, Jun Cao

Loss of furin cleavage site attenuates SARS-CoV-2 pathogenesis

Nature(2021)10.1038/s41586-021-03237-4

N/A

0DataRank · unranked

786 citations

Xuping Xie, Adam L. Bailey, Birte Kalveram, Kumari G. Lokugamage, Antonio E. Muruato +28 more

The coronavirus proofreading exoribonuclease mediates extensive viral recombination

PLoS Pathogens(2021)10.1371/journal.ppat.1009226

N/A

0DataRank · unranked

287 citations

Laura J. Stevens, Maria L. Agostini, Jordan Anderson-Daniels, James D. Chappell, Xiaotao Lu +4 more

RBFOX2 is critical for maintaining alternative polyadenylation patterns and mitochondrial health in rat myoblasts

Cell Reports(2021)10.1016/j.celrep.2021.109910

N/A

0DataRank · unranked

30 citations

Sunil K. Verma, Elizabeth Jaworski, S. Mohan, Chloe K. Nagasawa, Kempaiah Rayavara +13 more

Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa

Nucleic Acids Research(2021)10.1093/nar/gkab1259

N/A

0DataRank · unranked

9 citations

Stephanea Sotcheff, Christian M. Gallardo, Elizabeth Jaworski, Bruce E. Torbett, Andrew Routh +1 more

Mouse Adapted SARS-CoV-2 protects animals from lethal SARS-CoV challenge

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.03.442357

N/A

0DataRank · unranked

23 citations

Michelle N. Vu, Bryan A. Johnson, Meredith E. Davis-Gardner, Abigail Vanderheiden, Kumari Lokugmage +14 more

QTQTN motif upstream of the furin-cleavage site plays key role in SARS-CoV-2 infection and pathogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.15.472450

N/A

0DataRank · unranked

9 citations

Kumari G. Lokugamage, Jessica A. Plante, Dionna Scharton, Bryan A. Johnson, Stephanea Sotcheff +11 more

Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434828

N/A

0DataRank · unranked

8 citations

Rose M. Langsjoen, Brooke Mitchell, Barbara M. Judy, Patrick C. Newman, Jessica A. Plante +19 more

Co-variation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.14.460373

N/A

0DataRank · unranked

2 citations

Stephanea Sotcheff, Christian M. Gallardo, Elizabeth Jaworski, Bruce E. Torbett, Andrew Routh +1 more

Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis

PLoS Pathogens(2022)10.1371/journal.ppat.1010627

N/A

0DataRank · unranked

169 citations

Yiyang Zhou, Kumari G. Lokugamage, Michelle N. Vu, Nathen E. Bopp, Patricia A. Crocquet-Valdes +14 more

Next-generation sequencing: A new avenue to understand viral RNA–protein interactions

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.101924

N/A

0DataRank · unranked

12 citations

Stephanea Sotcheff, Andrew Routh, Yiyang Zhou

ViReMaShiny : an interactive application for analysis of viral recombination data

Bioinformatics(2022)10.1093/bioinformatics/btac522

N/A

0DataRank · unranked

7 citations

Andrew Routh, Jason Yeung

SARS-CoV-2 Uses Nonstructural Protein 16 to Evade Restriction by IFIT1 and IFIT3

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.26.509529

N/A

0DataRank · unranked

9 citations

Kumari G. Lokugamage, Michelle N. Vu, Bryan A. Johnson, Dionna Scharton, Jessica A. Plante +13 more

ViReMa: A Virus Recombination Mapper of Next-Generation Sequencing data characterizes diverse recombinant viral nucleic acids

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.12.484090

N/A

0DataRank · unranked

5 citations

Yiyang Zhou, Yan Sun, John E. Johnson, Bruce E. Torbett, Andrew Routh +1 more

ViReMaShiny : An Interactive Application for Analysis of Viral Recombination Data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.06.487215

N/A

0DataRank · unranked

1 citations

Andrew Routh, Jason Yeung

Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.29.501896

N/A

0DataRank · unranked

1 citations

Andrew Routh, Yiyang Zhou

Investigation of a SARS-CoV-2 outbreak in a Texas summer camp resulting from a single introduction

medRxiv(2022)10.1101/2022.05.29.22275277

N/A

0DataRank · unranked

0 citations

R. Elias Alvarado, Stephanea Sotcheff, Brooke Mitchell, Allan McConnell, Rafael Rahal Guaragna Machado +9 more

SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3

Journal of Virology(2023)10.1128/jvi.01532-22

N/A

0DataRank · unranked

46 citations

Kumari G. Lokugamage, Michelle N. Vu, Bryan A. Johnson, Dionna Scharton, Jessica A. Plante +13 more

ViReMa : a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids

GigaScience(2023)10.1093/gigascience/giad009

N/A

0DataRank · unranked

32 citations

Yiyang Zhou, Jason Yeung, Yan Sun, John E. Johnson, Bruce E. Torbett +2 more

RpoS activates formation of Salmonella Typhi biofilms and drives persistence in the gall bladder

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.26.564249

N/A

0DataRank · unranked

4 citations

Yiyang Zhou, Rahul Dilawari, Andrew Routh, Vsevolod L. Popov, Linda J. Kenney +1 more

Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability

Journal of Virology(2024)10.1128/jvi.01820-23

N/A

0DataRank · unranked

2 citations

Andrew Routh, Yiyang Zhou

Microbial interactions in the mosquito gut determine Serratia colonization and blood-feeding propensity

The ISME Journal(2020)10.1038/s41396-020-00763-3

N/A

0DataRank · unranked

111 citations

Shivanand Hegde, Christopher M. Roundy, George Golovko, Miguel A. Saldaña, Charles E. Hart +12 more

SARS-CoV-2 EndoU-ribonuclease regulates RNA recombination and impacts viral fitness

Nature Communications(2025)10.1038/s41467-025-67001-2

N/A

0DataRank · unranked

4 citations

Yani P. Ahearn, Kumari G. Lokugamage, Angelica L. Morgan, R. Elias Alvarado, Leah K. Estes +11 more

A Low Fidelity Virus Shows Increased Recombination during the Removal of an Alphavirus Reporter Gene

Viruses(2020)10.3390/v12060660

N/A

0DataRank · unranked

12 citations

Elizabeth Jaworski, Andrew Routh, Naomi L. Forrester, Tiffany F. Kautz

Furin Cleavage Site Is Key to SARS-CoV-2 Pathogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.26.268854

N/A

0DataRank · unranked

207 citations

Xuping Xie, Birte Kalveram, Kumari G. Lokugamage, Antonio E. Muruato, Jing Zou +24 more

The coronavirus proofreading exoribonuclease mediates extensive viral recombination

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.23.057786

N/A

0DataRank · unranked

33 citations

Andrea J. Pruijssers, Maria L. Agostini, Jordan Anderson-Daniels, James D. Chappell, Xiaotao Lu +4 more