Jeremy C. Smith

Also affiliated with University of Tennessee at Knoxville

Biochemistry, Genetics and Molecular BiologyMaterials SciencePhysics and AstronomyChemistryEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 41 papers. Top paper: “GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers”.

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

SoftwareX(2015)10.1016/j.softx.2015.06.001

N/A

1.5DataRank · unranked

25997 citations

Teemu Murtola, Roland Schulz, Szilárd Páll, Jeremy C. Smith, Berk Hess +3 more

All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins

The Journal of Physical Chemistry B(1998)10.1021/jp973084f

N/A

1.4DataRank · unranked

14461 citations

D. Bashford, M. Bellott, J. D. Evanseck, M. J. Field, S. Fischer +46 more

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

Bioinformatics(2013)10.1093/bioinformatics/btt055

N/A

1.3DataRank · unranked

7514 citations

Szilárd Páll, Roland Schulz, Per Larsson, Pär Bjelkmar, Rossen Apostolov +7 more

Novel Small Molecule Fibroblast Growth Factor 23 Inhibitors Increase Serum Phosphate and Improve Skeletal Abnormalities in Hyp Mice

Molecular Pharmacology(2022)10.1124/molpharm.121.000471

N/A

0.619DataRank · unranked

13 citations

Jiawang Liu, Shih‐Hsien Liu, Loukas Petridis, Chun Cai, Li Cao +8 more

Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation

Nature Communications(2022)10.1038/s41467-022-30509-y

N/A

0.599DataRank · unranked

14 citations

Haley Stubbs, Rupesh Agarwal, Izumi Yamakawa, Kelvin Luong, Kemal Solakyildirim +13 more

Structure-based group A streptococcal vaccine design: Helical wheel homology predicts antibody cross-reactivity among streptococcal M protein–derived peptides

Journal of Biological Chemistry(2020)10.1074/jbc.ra119.011258

N/A

0.518DataRank · unranked

12 citations

Thomas A. Penfound, Jay Spencer, Rupesh Agarwal, Jerome Baudry, James B. Dale +2 more

Property space mapping of Pseudomonas aeruginosa permeability to small molecules

Scientific Reports(2022)10.1038/s41598-022-12376-1

N/A

0.470DataRank · unranked

22 citations

Jon W. Weeks, Vincent Bonifay, Yue Shen, Liang Yang, Connor J. Cooper +7 more

The carboxylation status of osteocalcin has important consequences for its structure and dynamics

Biochimica et Biophysica Acta (BBA) - General Subjects(2020)10.1016/j.bbagen.2020.129809

N/A

0.442DataRank · unranked

18 citations

Min Pi, Satoru Kenneth Nishimoto, L. Darryl Quarles, Jérôme Baudry, Jeremy C. Smith +1 more

Antitumor T-cell Immunity Contributes to Pancreatic Cancer Immune Resistance

Cancer Immunology Research(2021)10.1158/2326-6066.cir-20-0272

N/A

0.442DataRank · unranked

18 citations

Zoe X. Malchiodi, Allison A. Fitzgerald, Annie Zuo, Shangzi Wang, Maha Moussa +10 more

Cross-reactive immunogenicity of group A streptococcal vaccines designed using a recurrent neural network to identify conserved M protein linear epitopes

Vaccine(2021)10.1016/j.vaccine.2021.01.075

N/A

0.373DataRank · unranked

11 citations

T. A. Penfound, Sanaz Salehi, Michelle P. Aranha, Lauren E. Wade, Rupesh Agarwal +4 more

Structure-Based Design of Small-Molecule Inhibitors of Human Interleukin-6

Molecules(2025)10.3390/molecules30142919

N/A

0.269DataRank · unranked

5 citations

Zhousheng Xiao, Sunil Kumar Suman, Connor J. Cooper, Khanh Ha, James A. Carson +4 more

GPRC6A is a Potential Therapeutic Target for Metformin Regulation of Glucose Homeostasis in Mice

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.19.608635

N/A

0.104DataRank · unranked

1 citations

Rupesh Agarwal, Micholas Dean Smith, Jeremy C. Smith, L. Darryl Quarles, Min Pi

Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.07.286344

N/A

0.104DataRank · unranked

1 citations

Diane L. Lynch, Isabella Daidone, Laura Zanetti-Polzi, Micholas Dean Smith, Chris Chipot +14 more

Structure based virtual screening identifies novel competitive inhibitors for the sialoglycan binding protein Hsa

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.27.006247

N/A

0.104DataRank · unranked

1 citations

Barbara A. Bensing, Dehui Mi, Paige N. Vinson, Jerome Baudry, T.M. Iverson +2 more

Tuning Proton Transfer Thermodynamics in SARS-Cov-2 Main Protease: Implications for Catalysis and Inhibitor Design

ChemRxiv(2021)10.26434/chemrxiv.13200227.v2

N/A

0DataRank · unranked

1 citations

Micholas Dean Smith, Chris Chipot, James C. Gumbart, Diane L. Lynch, Anna Pavlova +3 more

Identification of Small-Molecule Inhibitors of Fibroblast Growth Factor 23 Signaling via In Silico Hot Spot Prediction and Molecular Docking to α-Klotho

Journal of Chemical Information and Modeling(2022)10.1021/acs.jcim.2c00633

N/A

0DataRank · unranked

18 citations

Zhousheng Xiao, Sambit Kumar Mishra, Julie C. Mitchell, Jeremy C. Smith, L. Darryl Quarles +2 more

Osteocalcin binds to a GPRC6A Venus fly trap allosteric site to positively modulate GPRC6A signaling

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.15.480526

N/A

0DataRank · unranked

0 citations

Min Pi, Rui-Song Ye, Micholas Dean Smith, Jeremy C. Smith, L. Darryl Quarles +1 more

Genetic interactions between polycystin-1 and Wwtr1 in osteoblasts define a novel mechanosensing mechanism regulating bone formation in mice

Bone Research(2023)10.1038/s41413-023-00295-4

N/A

0DataRank · unranked

15 citations

Li Cao, Micholas Dean Smith, Hanxuan Li, Wěi Li, Jeremy C. Smith +2 more

Structure-guided design of a broadly cross-reactive multivalent group a streptococcal vaccine

Vaccine(2023)10.1016/j.vaccine.2023.08.026

N/A

0DataRank · unranked

8 citations

Michelle P. Aranha, Thomas A. Penfound, Sanaz Salehi, Jeremy C. Smith, James B. Dale

Dissecting Phenotype from Genotype with Clinical Isolates of SARS-CoV-2 First Wave Variants

Viruses(2023)10.3390/v15030611

N/A

0DataRank · unranked

3 citations

Evan P. Williams, Yi Xue, Piroon Jenjaroenpun, Thidathip Wongsurawat, Amanda Smith +15 more

Structural asymmetry in FGF23 signaling

Trends in Pharmacological Sciences(2023)10.1016/j.tips.2023.09.005

N/A

0DataRank · unranked

2 citations

Zhousheng Xiao, Jeremy C. Smith, L. Darryl Quarles, Shih‐Hsien Liu

Data from Antitumor T-cell Immunity Contributes to Pancreatic Cancer Immune Resistance

(2023)10.1158/2326-6066.c.6550273.v1

N/A

0DataRank · unranked

0 citations

Zoe X. Malchiodi, Allison A. Fitzgerald, Annie Zuo, Shangzi Wang, Maha Moussa +10 more

Genetic interactions between Polycystin-1 and TAZ in osteoblasts define a novel mechanosensing mechanism regulating bone formation in mice

Research Square(2023)10.21203/rs.3.rs-2957026/v1

N/A

0DataRank · unranked

0 citations

Micholas Dean Smith, Hanxuan Li, Wěi Li, Jeremy C. Smith, L. Darryl Quarles +2 more

Structure-Based Design of Small-Molecule Inhibitors of Human Interleukin-6

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.26.630392

N/A

0DataRank · unranked

1 citations

Zhou Xiao, Sunil Kumar Suman, Connor J. Cooper, Khanh Ha, Rupesh Agarwal +5 more

Bacteriorhodopsin proton-pumping mechanism: Successes and challenges in computational approaches

Biophysical Journal(2025)10.1016/j.bpj.2025.03.035

N/A

0DataRank · unranked

7 citations

Jeremy C. Smith, Ana‐Nicoleta Bondar

Sialic Acid Identity Modulates Host Tropism of Sialoglycan-binding Viridans Group Streptococci

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.24.660003

N/A

0DataRank · unranked

0 citations

Rupesh Agarwal, Haley Stubbs, Hai Yu, Stefan Rühl, Xi Chen +5 more

Sialic acid identity modulates host tropism of sialoglycan-binding viridans group streptococci

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110540

N/A

0DataRank · unranked

0 citations

Rupesh Agarwal, Haley Stubbs, Hai Yu, Stefan Rühl, Xi Chen +5 more

The N-terminal domain of COMPANION OF CELLULOSE SYNTHASE1 promotes microtubule array formation in Arabidopsis

PLANT PHYSIOLOGY(2025)10.1093/plphys/kiaf392

N/A

0DataRank · unranked

0 citations

Alan Hicks, Sriram Tiruvadi Krishnan, Wellington Leite, Shirish Chodankar, Jaydeep Kolape +4 more

Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease

Chemical Science(2020)10.1039/d0sc04942e

N/A

0DataRank · unranked

59 citations

Diane L. Lynch, Isabella Daidone, Laura Zanetti‐Polzi, Micholas Dean Smith, Chris Chipot +14 more

Discovery of multidrug efflux pump inhibitors with a novel chemical scaffold

Biochimica et Biophysica Acta (BBA) - General Subjects(2020)10.1016/j.bbagen.2020.129546

N/A

0DataRank · unranked

42 citations

Mohammad Moniruzzaman, Connor J. Cooper, John K. Walker, Jeremy C. Smith, Jerry M. Parks +2 more

Structure based virtual screening identifies small molecule effectors for the sialoglycan binding protein Hsa

Biochemical Journal(2020)10.1042/bcj20200332

N/A

0DataRank · unranked

9 citations

Barbara A. Bensing, Dehui Mi, Paige N. Vinson, Jérôme Baudry, T.M. Iverson +2 more

Tuning Proton Transfer Thermodynamics in SARS-Cov-2 Main Protease: Implications for Catalysis and Inhibitor Design

ChemRxiv(2020)10.26434/chemrxiv.13200227

N/A

0DataRank · unranked

7 citations

Micholas Dean Smith, Chris Chipot, James C. Gumbart, Diane L. Lynch, Anna Pavlova +3 more

Small molecule FGF23 inhibitors increase serum phosphate and improve skeletal abnormalities in Hyp mice

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.04.236877

N/A

0DataRank · unranked

4 citations

Jiawang Liu, Shih‐Hsien Liu, Loukas Petridis, Chun Cai, Li Cao +8 more

Identification of Small-Molecule Inhibitors of FGF23 Signaling via In Silico Hot Spot Prediction and Molecular Docking to α-Klotho

(2020)10.26434/chemrxiv.13083224.v2

N/A

0DataRank · unranked

0 citations

Zhousheng Xiao, Sambit Kumar Mishra, Julie C. Mitchell, Jeremy C. Smith, L. Darryl Quarles +2 more

Terrestrial Trapping of the Interstellar Gas, Phosphorus Nitride

ChemRxiv(2020)10.26434/chemrxiv.12469046

N/A

0DataRank · unranked

0 citations

Sean A. Lutz, Daniel M. Beagan, Xinfeng Gao, Maren Pink, Chun‐Hsing Chen +4 more

Identification of Small-Molecule Inhibitors of FGF23 Signaling via In Silico Hot Spot Prediction and Molecular Docking to α-Klotho

ChemRxiv(2020)10.26434/chemrxiv.13083224

N/A

0DataRank · unranked

0 citations

Zhousheng Xiao, Sambit Kumar Mishra, Julie C. Mitchell, Jeremy C. Smith, L. Darryl Quarles +2 more

Tuning Proton Transfer Thermodynamics in SARS-Cov-2 Main Protease: Implications for Catalysis and Inhibitor Design

ChemRxiv(2020)10.26434/chemrxiv.13200227.v1

N/A

0DataRank · unranked

0 citations

Micholas Dean Smith, Chris Chipot, James C. Gumbart, Diane L. Lynch, Anna Pavlova +3 more

Identification of Small-Molecule Inhibitors of FGF23 Signaling via In Silico Hot Spot Prediction and Molecular Docking to α-Klotho

ChemRxiv(2020)10.26434/chemrxiv.13083224.v1

N/A

0DataRank · unranked

0 citations

Zhousheng Xiao, Sambit Kumar Mishra, Julie C. Mitchell, Jeremy C. Smith, L. Darryl Quarles +2 more

Ensemble-based docking: From hit discovery to metabolism and toxicity predictions

UNC Libraries(2020)10.17615/4ae6-6s45

N/A

0DataRank · unranked

0 citations

Jeremy C. Smith, Karan Kapoor, Rebecca L. Weir, Jérôme Baudry, Sally R. Ellingson +2 more

Lpp positions peptidoglycan at the AcrA-TolC interface in the AcrAB-TolC multidrug efflux pump

Biophysical Journal(2021)10.1016/j.bpj.2021.08.016

N/A

0DataRank · unranked

26 citations

Josie L. Ferreira, Hyea Hwang, Anthony Hazel, Connor J. Cooper, Jerry M. Parks +4 more

A Model for the Signal Initiation Complex Between Arrestin-3 and the Src Family Kinase Fgr

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.167400

N/A

0DataRank · unranked

13 citations

Sandra Berndt, Rupesh Agarwal, Manuel Castro, Sergey A. Vishnivetskiy, Jeremy C. Smith +4 more