Michal Slyper

Also affiliated with Klarman Cell Observatory

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.5Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Papers

Driven by 51 papers — median percentile 84. Top paper: “COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets”.

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

Nature(2021)10.1038/s41586-021-03570-8

N/A

10.7DataRank · unranked

879 citations

Carly G.K. Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe +95 more

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

Nature Medicine(2021)10.1038/s41591-020-01227-z

N/A

8.2DataRank · unranked

378 citations

Malte D. Luecken, Gökcen Eraslan, Lisa Sikkema, Avinash Waghray, Graham Heimberg +95 more

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Blood and immune development in human fetal bone marrow and Down syndrome

Nature(2021)10.1038/s41586-021-03929-x

N/A

3.2DataRank · unranked

160 citations

Simone Webb, Issac Goh, Mariana Quiroga Londoño, Gary Reynolds, Michael Mather +60 more

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/761429

N/A

2.5DataRank · unranked

68 citations

Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Indresh Singh +44 more

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2024)10.1038/s41591-024-03215-z

Top 15%

1.3DataRank

Top 15%91 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Single-nucleus cross-tissue molecular reference maps to decipher disease gene function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.19.452954

Top 16%

1.3DataRank

Top 16%27 citations

Eugene Drokhlyansky, Shankara Anand, Ayshwarya Subramanian, Evgenij Fiskin, Michal Slyper +19 more

Protective role for kidney TREM2 macrophages in obesity- and diabetes-induced kidney injury

Cell Reports(2024)10.1016/j.celrep.2024.114253

N/A

1.2DataRank · unranked

45 citations

Katherine A. Vernon, Yiming Zhou, Jamie L. Marshall, Maria Alimova, Carlos Arevalo +35 more

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/455451

N/A

1.1DataRank · unranked

19 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +24 more

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

Cell(2019)10.1016/j.cell.2019.06.029

N/A

1.1DataRank · unranked

1412 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +28 more

Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus

Science(2022)10.1126/science.abf1970

N/A

0.939DataRank · unranked

522 citations

M. Grace Gordon, Meena Subramaniam, Min Cheol Kim, George C. Hartoularos, Sasha Targ +25 more

A single-cell landscape of high-grade serous ovarian cancer

Nature Medicine(2020)10.1038/s41591-020-0926-0

N/A

0.938DataRank · unranked

518 citations

Itay Tirosh, Elizabeth H. Stover, Isaac Wakiro, Michael S. Cuoco, Idan Alter +30 more

Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems

Science(2021)10.1126/science.aax2656

N/A

0.902DataRank · unranked

408 citations

Daniel R. Goodwin, Anubhav Sinha, Asmamaw T. Wassie, Fei Chen, Evan R. Daugharthy +164 more

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574538

Top 22%

0.898DataRank

Top 22%34 citations

Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper +53 more

snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis

Nature(2020)10.1038/s41586-020-2856-x

N/A

0.885DataRank · unranked

364 citations

Hua Dong, Miroslav Balaz, Michal Slyper, Eugene Drokhlyansky, Georgia Colleluori +17 more

Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity

Hepatology Communications(2021)10.1002/hep4.1854

N/A

0.845DataRank · unranked

278 citations

Jawairia Atif, Jeff C. Liu, Catia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni +18 more

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

Nature Methods(2020)10.1038/s41592-020-0905-x

N/A

0.837DataRank · unranked

264 citations

Joshua Gould, Yiming Yang, Siranush Sarkizova, Marcin Tabaka, Orr Ashenberg +9 more

Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation

Nature Communications(2019)10.1038/s41467-019-13382-0

N/A

0.808DataRank · unranked

218 citations

Eriene-Heidi Sidhom, Maheswarareddy Emani, Nareh Sahakian, Yiming Zhou, Maria Kost-Alimova +12 more

Skin-resident innate lymphoid cells converge on a pathogenic effector state

Nature(2021)10.1038/s41586-021-03188-w

N/A

0.798DataRank · unranked

204 citations

Samantha J. Riesenfeld, Jan-Christian Hütter, Elena Torlai Triglia, Monika S. Kowalczyk, Roberto R. Ricardo-Gonzalez +29 more

Obesity-instructed TREM2 high macrophages identified by comparative analysis of diabetic mouse and human kidney at single cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.30.446342

N/A

0.768DataRank · unranked

14 citations

Yiming Zhou, Jamie L. Marshall, Maria Alimova, Fan Zhang, Michal Slyper +23 more

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.27.514070

N/A

0.677DataRank · unranked

16 citations

Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey +63 more

Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.563503

N/A

0.564DataRank · unranked

11 citations

Gökçen Eraslan, Maria Beatrice Alora, Juan Manuel Leyva-Castillo, Sean Kim, Heather Choe +24 more

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

Genome Biology(2025)10.1186/s13059-025-03499-5

N/A

0.363DataRank · unranked

7 citations

Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey +70 more

A cellular and spatial atlas of TP53-associated tissue remodeling defines a multicellular tumor ecosystem in lung adenocarcinoma

Nature Cancer(2025)10.1038/s43018-025-01053-7

N/A

0.351DataRank · unranked

9 citations

Thinh T. Nguyen, Atharva Bhagwat, Akhil Kumar, Bruno Giotti, Benjamin Kepecs +29 more

A cellular and spatial atlas of TP53 -associated tissue remodeling in lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546977

Top 50%

0.349DataRank

Top 50%5 citations

Benjamin Kepecs, Navin R. Mahadevan, Jason L. Weirather, Naomi R. Besson, Bruno Giotti +19 more

RAAS blockade, kidney disease, and expression of ACE2 , the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.23.167098

N/A

0.312DataRank · unranked

7 citations

Katherine A. Vernon, Michal Slyper, Julia Waldman, Malte D. Luecken, Kirk Gosik +13 more

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/654210

N/A

0.296DataRank · unranked

5 citations

Rachel A. Botting, Emily Stephenson, Kile Green, Laura Jardine, Emily F. Calderbank +54 more

Single-nucleus RNA-Seq reveals a new type of brown adipocyte regulating thermogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.20.890327

N/A

0.269DataRank · unranked

5 citations

Hua Dong, Miroslav Balaz, Michal Slyper, Eugene Drokhlyansky, Georgia Colleluori +13 more

HTAPP_TST- Nuclei isolation from frozen tissue v2

(2020)10.17504/protocols.io.bhbcj2iw

N/A

0.219DataRank · unranked

1 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Prisca Liberali, Åsa Segerstolpe +2 more

SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

Genome Biology(2025)10.1186/s13059-025-03573-y

N/A

0.107DataRank · unranked

1 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Robert Strasser +16 more

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2025)10.1038/s41591-025-03665-z

N/A

0.104DataRank · unranked

1 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

HTAPP_CST- Nuclei isolation from frozen tissue v1

(2019)10.17504/protocols.io.4pegvje

N/A

0DataRank · unranked

0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +2 more

EPCO-07. HYBRID NEURO-GLIAL CELLULAR ARCHITECTURE IN HIGH-GRADE GLIOMA DRIVEN BY H3-G34R MUTATION

Neuro-Oncology(2021)10.1093/neuonc/noab196.006

N/A

0DataRank · unranked

0 citations

Masashi Nomura, Chen He, Lillian Bussema, Michal Slyper, Laura Hover +7 more

HTAPP_Test protocol_Dissociation of primary neuroblastoma resection to a single-cell suspension for single-cell RNA-seq (using papain and ACK) v1

(2021)10.17504/protocols.io.brvqm65w

N/A

0DataRank · unranked

0 citations

Jingyi Wu, Michal Slyper, Sébastien Vigneau, Asaf Rotem, Orit Rozenblatt–Rosen +4 more

Single Cell, Single Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.27.436882

N/A

0DataRank · unranked

15 citations

Jawairia Atif, Jeff C. Liu, Cátia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni +15 more

Accelerated cognitive decline in obese mouse model of Alzheimer’s disease is linked to sialic acid-driven immune deregulation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.05.479219

N/A

0DataRank · unranked

1 citations

Tommaso Croese, Adi Ravid, Or Gold, Abbe R. Clark, Sedi Medina +14 more

SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.25.517982

N/A

0DataRank · unranked

0 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Ofir Cohen +13 more

N-acetylneuraminic acid links immune exhaustion and accelerated memory deficit in diet-induced obese Alzheimer’s disease mouse model

Nature Communications(2023)10.1038/s41467-023-36759-8

N/A

0DataRank · unranked

47 citations

Tommaso Croese, Adi Ravid, Or Gold, Abbe R. Clark, Sedi Medina +17 more

Inference of single cell profiles from histology stains with the Single Cell omics from Histology Analysis Framework (SCHAF)

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.21.533680

N/A

0DataRank · unranked

36 citations

Xingjian Chen, Eeshit Dhaval Vaishnav, Koseki J. Kobayashi-Kirschvink, Metamia Ciampricotti, Ke Zhang +30 more

HTAPP_NST- Nuclei isolation from frozen tissue v1

(2019)10.17504/protocols.io.4pfgvjn

N/A

0DataRank · unranked

0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +2 more

A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.28.569028

N/A

0DataRank · unranked

11 citations

Isha Monga, Brian Lin, Viral S. Shah, Michal Slyper, Bruno Giotti +18 more

HTAPP_Test protocol__Dissociation of primary neuroblastoma resection to a single-cell suspension for single-cell RNA-seq (using collagenase 4) v1

(2021)10.17504/protocols.io.btd7ni9n

N/A

0DataRank · unranked

0 citations

Michal Slyper, Sébastien Vigneau, Asaf Rotem, Orit Rozenblatt–Rosen, Prisca Liberali +3 more

HTAPP_Dissociation of human metastatic breast cancer core needle biopsy to a single-cell suspension for single-cell RNA-seq v2

(2020)10.17504/protocols.io.bhbjj2kn

N/A

0DataRank · unranked

0 citations

Julia Waldman, Jingyi Wu, Abhay Kanodia, Sébastien Vigneau, Asaf Rotem +4 more

HTAPP_Dissociation of human primary lung cancer resection to a single-cell suspension for single-cell RNA-seq v1

(2019)10.17504/protocols.io.4j8gurw

N/A

0DataRank · unranked

0 citations

Avinash Waghray, Julia Waldman, Isaac Wakiro, Mei-Ju Su, Sébastien Vigneau +6 more

HTAPP_Dissociation of primary neuroblastoma resection to a single-cell suspension for single-cell RNA-seq (using papain, density gradient, and optionally ACK) v1

(2021)10.17504/protocols.io.brvnm65e

N/A

0DataRank · unranked

0 citations

Jingyi Wu, Michal Slyper, Sébastien Vigneau, Asaf Rotem, Orit Rozenblatt–Rosen +4 more

HTAPP_Dissociation of human primary lung cancer resection to a single-cell suspension for single-cell RNA-seq v2

(2020)10.17504/protocols.io.bhbgj2jw

N/A

0DataRank · unranked

0 citations

Avinash Waghray, Julia Waldman, Isaac Wakiro, Mei-Ju Su, Sébastien Vigneau +6 more

HTAPP_Dissociation of human metastatic breast cancer core needle biopsy to a single-cell suspension for single-cell RNA-seq v1

(2019)10.17504/protocols.io.4j7gurn

N/A

0DataRank · unranked

0 citations

Julia Waldman, Jingyi Wu, Abhay Kanodia, Sébastien Vigneau, Asaf Rotem +5 more

HTAPP_TST- Nuclei isolation from frozen tissue v1

(2019)10.17504/protocols.io.4pggvjw

N/A

0DataRank · unranked

0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +2 more

HTAPP_CST- Nuclei isolation from frozen tissue v2

(2020)10.17504/protocols.io.bhbej2je

N/A

0DataRank · unranked

0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +3 more

HTAPP_Dissociation of primary neuroblastoma core needle biopsy to a single-cell suspension for single-cell RNA-seq (using papain, density gradient, and optionally ACK) v1

(2020)10.17504/protocols.io.bkgnktve

N/A

0DataRank · unranked

0 citations

Jingyi Wu, Michal Slyper, Sébastien Vigneau, Asaf Rotem, Orit Rozenblatt–Rosen +4 more

HTAPP_Dissociation of human metastatic breast cancer lymph node excision biopsy to a single-cell suspension for single-cell RNA-seq (using Collagenase 4 and Dispase II) v1

(2021)10.17504/protocols.io.bua9nsh6

N/A

0DataRank · unranked

0 citations

Jingyi Wu, Sébastien Vigneau, Michal Slyper, Asaf Rotem, Orit Rozenblatt–Rosen +4 more

Michal Slyper

Indexed papers

Top data-sharing exemplar

Papers