Venkat Gopalan

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “Piece by piece: Building a ribozyme”.

Piece by piece: Building a ribozyme

Journal of Biological Chemistry(2020)10.1074/jbc.rev119.009929

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0.963DataRank · unranked

31 citations

Venkat Gopalan, Michael W. Gray

Use of tandem affinity–buffer exchange chromatography online with native mass spectrometry for optimizing overexpression and purification of recombinant proteins

Methods in enzymology on CD-ROM/Methods in enzymology(2021)10.1016/bs.mie.2021.07.007

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0.509DataRank · unranked

10 citations

Pankajavalli Thirugnanasambantham, Vaishnavi Sidharthan, Andrew Norris, Jamison D. Law, Venkat Gopalan +2 more

Using an L7Ae-Tethered, Hydroxyl Radical-Mediated Footprinting Strategy to Identify and Validate Kink-Turns in RNAs

Methods in molecular biology(2020)10.1007/978-1-0716-0716-9_9

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0DataRank · unranked

0 citations

Venkat Gopalan, Stella M. Lai

Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates

Molecular Cell(2021)10.1016/j.molcel.2020.12.017

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0DataRank · unranked

91 citations

Paul M. Gasper, Luyi Cheng, Lien B. Lai, Simi Kaur, Venkat Gopalan +3 more

The rice RNase P protein subunit Rpp30 confers broad‐spectrum resistance to fungal and bacterial pathogens

Plant Biotechnology Journal(2021)10.1111/pbi.13612

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0DataRank · unranked

28 citations

Yehui Xiong, Lien B. Lai, Kai Zhang, Zhiqiang Li, Houxiang Kang +5 more

Protein cofactors and substrate influence Mg2+-dependent structural changes in the catalytic RNA of archaeal RNase P

Nucleic Acids Research(2021)10.1093/nar/gkab655

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0DataRank · unranked

9 citations

Stella M. Lai, Walter J. Zahurancik, Michael G. Poirier, Vicki H. Wysocki, Venkat Gopalan +1 more

Purification, reconstitution, and mass analysis of archaeal RNase P, a multisubunit ribonucleoprotein enzyme

Methods in enzymology on CD-ROM/Methods in enzymology(2021)10.1016/bs.mie.2021.07.006

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0DataRank · unranked

3 citations

Andrew Norris, Stella M. Lai, Dalton T. Snyder, Vicki H. Wysocki, Venkat Gopalan +1 more

Characterization of Transcription Factor‐DNA Complexes Using Online Buffer Exchange Coupled to Native Mass Spectrometry

The FASEB Journal(2021)10.1096/fasebj.2021.35.s1.05163

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0DataRank · unranked

0 citations

Angela Di Capua, Sravya Kovvali, Joy Shaffer, Edward J. Behrman, Vicki H. Wysocki +2 more

Screening Tagged Proteins Using Tandem Affinity-Buffer Exchange Chromatography Online with Native Mass Spectrometry

ChemRxiv(2021)10.26434/chemrxiv.14035691.v1

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0DataRank · unranked

0 citations

Zachary L. VanAernum, Stella M. Lai, Venkat Gopalan, Vicki H. Wysocki, Florian Büsch

Screening Tagged Proteins Using Tandem Affinity-Buffer Exchange Chromatography Online with Native Mass Spectrometry

ChemRxiv(2021)10.26434/chemrxiv.14035691

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0DataRank · unranked

0 citations

Zachary L. VanAernum, Stella M. Lai, Venkat Gopalan, Vicki H. Wysocki, Florian Büsch

Structural basis for impaired 5′ processing of a mutant tRNA associated with defects in neuronal homeostasis

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2119529119

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0DataRank · unranked

16 citations

Stella M. Lai, Eric S. Szymanski, Mridu Kapur, Edric K. Choi, Hashim M. Al‐Hashimi +3 more

Elucidation of structure–function relationships in Methanocaldococcus jannaschii RNase P, a multi-subunit catalytic ribonucleoprotein

Nucleic Acids Research(2022)10.1093/nar/gkac595

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0DataRank · unranked

9 citations

Andrew Norris, Chen Du, Kye Stachowski, Bela Haifa Khairunisa, Vaishnavi Sidharthan +5 more

Characterization of a Salmonella Transcription Factor-DNA Complex and Identification of the Inducer by Native Mass Spectrometry

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167480

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0DataRank · unranked

7 citations

Angela Di Capua, Joy Shaffer, Edward J. Behrman, Vicki H. Wysocki, Venkat Gopalan +1 more

Serendipitous Discovery of a Competitive Inhibitor of FraB, a Salmonella Deglycase and Drug Target

Pathogens(2022)10.3390/pathogens11101102

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0DataRank · unranked

4 citations

Sravya Kovvali, Austin M. Cool, Yuan Gao, Anice Sabag-Daigle, Erin F. Boulanger +8 more

Demonstrating the utility of sugar-phosphate phosphatases in coupled enzyme assays: galactose-1-phosphate uridylyltransferase as proof-of-concept

Glycobiology(2022)10.1093/glycob/cwac085

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0DataRank · unranked

2 citations

Eleanor Bashian, Rosemary Zaleski, Venkat Gopalan, Pankajavalli Thirugnanasambantham

RNAs undergo phase transitions with lower critical solution temperatures

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.17.512593

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0DataRank · unranked

21 citations

Walter J. Zahurancik, Xiangze Zeng, Paul Pullara, Lien B. Lai, Vaishnavi Sidharthan +4 more

RNAs undergo phase transitions with lower critical solution temperatures

Nature Chemistry(2023)10.1038/s41557-023-01353-4

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0DataRank · unranked

133 citations

Walter J. Zahurancik, Xiangze Zeng, Paul Pullara, Lien B. Lai, Vaishnavi Sidharthan +4 more

Identification of Small-Molecule Inhibitors of the Salmonella FraB Deglycase Using a Live-Cell Assay

Microbiology Spectrum(2023)10.1128/spectrum.04606-22

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0DataRank · unranked

8 citations

Erin F. Boulanger, Pankajavalli Thirugnanasambantham, Jamison D. Law, Alex J. Bogard, Edward J. Behrman +3 more

Insights into the catalytic mechanism of a bacterial deglycase essential for utilization of fructose‐lysine

Protein Science(2023)10.1002/pro.4695

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0DataRank · unranked

5 citations

Yuan Gao, Austin M. Cool, Steffen Lindert, Vicki H. Wysocki, Charles E. Bell +2 more

RNA-driven phase transitions in biomolecular condensates

Molecular Cell(2024)10.1016/j.molcel.2024.09.005

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0DataRank · unranked

112 citations

Sukanya Srinivasan, Lien B. Lai, Moulisubhro Datta, Venkat Gopalan, Priya R. Banerjee +1 more

Use of a small molecule microarray screen to identify inhibitors of the catalytic RNA subunit of Methanobrevibacter smithii RNase P

Nucleic Acids Research(2024)10.1093/nar/gkae1190

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0DataRank · unranked

5 citations

Christopher D. Sibley, Kara Dunne-Dombrink, Mo Yang, Walter J. Zahurancik, Sumirtha Balaratnam +4 more

Design of a yeast SUMO tag to eliminate internal translation initiation

Protein Science(2024)10.1002/pro.5256

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0DataRank · unranked

2 citations

Yuan Gao, Vicki H. Wysocki, Venkat Gopalan, Jamison D. Law

Polarity effects, resistance, and probiotic enhancement of intoxication of Salmonella enterica fraB mutants in murine models

PLoS ONE(2025)10.1371/journal.pone.0339602

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0DataRank · unranked

1 citations

Erin F. Boulanger, Maryam Baniasad, Yongseok Kim, Madalyn Moore, Bailyn Hogue +5 more

Identification of inhibitors of the SalmonellaFraB deglycase, a drug target

FEBS Open Bio(2025)10.1002/2211-5463.70001

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0DataRank · unranked

2 citations

Yuan Gao, Sravya Kovvali, Pankajavalli Thirugnanasambantham, Vicki H. Wysocki, Brian M. M. Ahmer +2 more

Mitochondrial tRNA processing: a neutral evolutionary ratchet innovation

Trends in Biochemical Sciences(2025)10.1016/j.tibs.2025.05.008

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0DataRank · unranked

0 citations

Jane E. Jackman, Charles J. Daniels, Venkat Gopalan, Lien B. Lai

Crystal structures of Salmonella entericaFraB deglycase reveal a conformational heterodimer with remarkable structural plasticity at the active site

Protein Science(2025)10.1002/pro.70260

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0DataRank · unranked

0 citations

Jamison D. Law, Yuan Gao, Sravya Kovvali, Vicki H. Wysocki, Venkat Gopalan +2 more

Solid-state nanopore sensing reveals conformational changes induced by a mutation in a neuron-specific tRNAArg

Nucleic Acids Research(2025)10.1093/nar/gkaf1411

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0DataRank · unranked

0 citations

Lien B. Lai, Rahul Mehta, Buddini I Karawdeniya, Y M Nuwan D Y Bandara, Andrew J. Clulow +4 more

Alternative Protein Topology-Mediated Evolution of a Catalytic Ribonucleoprotein

Trends in Biochemical Sciences(2020)10.1016/j.tibs.2020.08.002

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0DataRank · unranked

6 citations

Hong‐Duc Phan, Walter J. Zahurancik, Venkat Gopalan, Lien B. Lai