Björn Grüning

Decision SciencesBiochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “deepTools: a flexible platform for exploring deep-sequencing data”.

deepTools: a flexible platform for exploring deep-sequencing data

Nucleic Acids Research(2014)10.1093/nar/gku365

N/A

1.2DataRank · unranked

4104 citations

Friederike Dündar, Sarah Diehl, Thomas Manke, Björn Grüning, Fidel Ramírez

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

GigaScience(2020)10.1093/gigascience/giaa102

N/A

0.687DataRank · unranked

21 citations

Bérénice Batut, Alexander Ostrovsky, Christophe Antoniewski, Dave Clements, Fidel Ramírez +18 more

“Be sustainable”: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling

The EMBO Journal(2023)10.15252/embj.2023115008

N/A

0.464DataRank · unranked

21 citations

Arina Rybina, Jean‐Marie Burel, Jean-Karim Hèriché, Pauline Audergon, Jan-Willem Boiten +53 more

Preprint: "Be Sustainable", Recommendations for FAIR Resources in Life Sciences research: EOSC-Life's Lessons

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8338931

N/A

0DataRank · unranked

0 citations

Arina Rybina, Jean‐Marie Burel, Jean-Karim Hèriché, Pauline Audergon, Jan-Willem Boiten +53 more

Preprint: "Be Sustainable Recommendations" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8226003

N/A

0DataRank · unranked

0 citations

Jean‐Marie Burel, Jean-Karim Hèriché, Arina Rybina, Pauline Audergon, Jan-Willem Boiten +53 more

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics

PLoS Pathogens(2020)10.1371/journal.ppat.1008643

N/A

0DataRank · unranked

34 citations

Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John Chilton, Nate Coraor +13 more

Training Infrastructure as a Service

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.23.263509

N/A

0DataRank · unranked

4 citations

Björn Grüning, Helena Rasche

A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.06.137570

N/A

0DataRank · unranked

3 citations

Bérénice Batut, Alexander Ostrovsky, Christophe Antoniewski, Dave Clements, Fidel Ramírez +18 more

Expanding the Galaxy’s reference data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.09.327114

N/A

0DataRank · unranked

3 citations

Jayadev Joshi, Nate Coraor, Jennifer Hillman‐Jackson, Dave Bouvier, Marius van den Beek +22 more

Adding software to package management systems can increase their citation by 280%

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.385211

N/A

0DataRank · unranked

0 citations

Dave Clements, Björn Grüning, Daniel Blankenberg, Jeremy Goecks, Vahid Jalili

Ready-to-use public infrastructure for global SARS-CoV-2 monitoring

Nature Biotechnology(2021)10.1038/s41587-021-01069-1

N/A

0DataRank · unranked

30 citations

Simon Bray, Marius van den Beek, Dave Bouvier, Nathan Coraor, Milad Miladi +12 more

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19)

Clinical Proteomics(2021)10.1186/s12014-021-09321-1

N/A

0DataRank · unranked

10 citations

Subina Mehta, Dinh Duy An Nguyen, Björn Grüning, James E. Johnson, Thomas McGowan +3 more

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.25.437046

N/A

0DataRank · unranked

10 citations

Simon Bray, Marius van den Beek, Dave Bouvier, Nathaniel Coraor, Milad Miladi +12 more

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19)

medRxiv(2021)10.1101/2021.02.09.21251427

N/A

0DataRank · unranked

0 citations

Subina Mehta, Dinh Duy An Nguyen, Björn Grüning, James E. Johnson, Thomas McGowan +3 more

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Nucleic Acids Research(2022)10.1093/nar/gkac247

N/A

0DataRank · unranked

1384 citations

Enis Afgan, Anton Nekrutenko, Björn Grüning, Daniel Blankenberg, Jeremy Goecks +89 more

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

Molecular Biology and Evolution(2022)10.1093/molbev/msac061

N/A

0DataRank · unranked

123 citations

Spyros Lytras, Alexander G. Lucaci, Wolfgang Maier, Björn Grüning, Stephen D. Shank +33 more

Training Infrastructure as a Service

GigaScience(2022)10.1093/gigascience/giad048

N/A

0DataRank · unranked

7 citations

Cameron Hyde, John Davis, Simon Gladman, Nate Coraor, Anthony Bretaudeau +9 more

Expanding the Galaxy’s reference data

Bioinformatics Advances(2022)10.1093/bioadv/vbac030

N/A

0DataRank · unranked

3 citations

Jayadev Joshi, Nate Coraor, Jennifer Hillman‐Jackson, Dave Bouvier, Marius van den Beek +22 more

Galaxy-ME: A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504436

N/A

0DataRank · unranked

8 citations

Cameron Watson, Qiang Gu, Daniel Persson, Luke Sargent, Yu‐An Chen +13 more

Planemo: a command-line toolkit for developing, deploying, and executing scientific data analyses

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.13.483965

N/A

0DataRank · unranked

3 citations

Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche +6 more

Galaxy Training: A Powerful Framework for Teaching!

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.02.494505

N/A

0DataRank · unranked

2 citations

Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg +29 more

Galaxy Training: A powerful framework for teaching!

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010752

N/A

0DataRank · unranked

109 citations

Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg +29 more

The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

Genome Research(2023)10.1101/gr.276963.122

N/A

0DataRank · unranked

16 citations

John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut +6 more

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546576

N/A

0DataRank · unranked

11 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +32 more

The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Nucleic Acids Research(2024)10.1093/nar/gkae410

N/A

0DataRank · unranked

865 citations

Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon +95 more

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Nature Biotechnology(2024)10.1038/s41587-023-02100-3

N/A

0DataRank · unranked

67 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +36 more

Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.23.629682

N/A

0DataRank · unranked

2 citations

Nikolaos Pechlivanis, Nikolaos Strepis, Pierre Amato, Matthias Bernt, Anshu Bhardwaj +31 more

Sustainability of FAIR Life Science Resources and Projects: Lessons Learned from EOSC-Life Research Infrastructures

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8059831

N/A

0DataRank · unranked

0 citations

Jean‐Marie Burel, Jean-Karim Hèriché, Arina Rybina, Pauline Audergon, Jan-Willem Boiten +53 more

From data to publication in a browser with BRC-Analytics: Evolutionary dynamics of coding overlaps in measles virus

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.682095

N/A

0DataRank · unranked

2 citations

Danielle Callan, Marius van den Beek, Dannon Baker, David J. Rogers, Wolfgang Maier +8 more

Sustainability of FAIR Life Science Resources and Projects: Lessons Learned from EOSC-Life Research Infrastructures

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8068648

N/A

0DataRank · unranked

0 citations

Jean‐Marie Burel, Jean-Karim Hèriché, Arina Rybina, Pauline Audergon, Jan-Willem Boiten +53 more

Preprint: "Be Sustainable Recommendations" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8247376

N/A

0DataRank · unranked

0 citations

Arina Rybina, Jean‐Marie Burel, Jean-Karim Hèriché, Pauline Audergon, Jan-Willem Boiten +53 more