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deepTools: a flexible platform for exploring deep-sequencing data

Nucleic Acids Research(2014)10.1093/nar/gku365Source: DataRank Database

deepTools: a flexible platform for exploring deep-sequencing data is a research paper published in Nucleic Acids Research (2014). On theSindex it has a DataRank of 1.2. It has been cited 4,104 times.

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1.2DataRank · unranked

Scored on demand from live citation data

Open Access4,104 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (1 grants)Impact (FWCI 31.98)OA: goldTopics (28)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

1.2

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

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Authors (5)

Friederike Dündar ORCID,Sarah Diehl,Thomas Manke ORCID,Björn Grüning ORCID,Fidel Ramírez ORCID

Live enrichment

PubMed:24799436 PMC:PMC4086134 OpenAlex:https://openalex.org/W2158789637

Deutsche Forschungsgemeinschaft

Grant: 192904750/SFB 992

MEDEP - Medical Epigenetics - from basic mechanisms to clinical applications

FWCI

31.98

Citation Percentile

1.0%

Citation Trend

2014

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goldLicense: cc-by-nc

journalhttps://academic.oup.com/nar/article-pdf/42/W1/W187/17423011/gku365.pdf

publisherhttps://academic.oup.com/nar/article-pdf/42/W1/W187/17423011/gku365.pdf

publisherhttp://academic.oup.com/nar/article-pdf/42/W1/W187/17423011/gku365.pdf

journalhttps://doi.org/10.1093/nar/gku365

repositoryhttps://pubmed.ncbi.nlm.nih.gov/24799436

Fields of Study

Genomics and Phylogenetic StudiesScientific Computing and Data ManagementGene expression and cancer classification0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

Computer GraphicsSoftwareInternetHigh-Throughput Nucleotide Sequencing

Keywords

UploadSuiteWeb serverComputer scienceDocumentationModular designWeb applicationFile formatWorld Wide WebBiologyDatabaseOperating systemThe InternetInternetComputer GraphicsHigh-Throughput Nucleotide SequencingArticleSoftware

Sustainable Development Goals

SDG 3: 3. Good health

Additional file 2 of Insertion of short L1 sequences generates inter-strain histone acetylation differences in the mouse

10.6084/m9.figshare.25801092.v1figshare

Additional file 2 of Insertion of short L1 sequences generates inter-strain histone acetylation differences in the mouse

10.6084/m9.figshare.25801092figshare

Additional file 2 of A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature

10.6084/m9.figshare.24062465.v1figshare

Additional file 2 of A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature

10.6084/m9.figshare.24062465figshare

Additional file 1 of A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature

10.6084/m9.figshare.24062462.v1figshare

Additional file 1 of A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature

10.6084/m9.figshare.24062462figshare

Additional file 1 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

10.6084/m9.figshare.22626205.v1figshare

Additional file 1 of NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

10.6084/m9.figshare.22626205figshare

Additional file 1 of Global histone protein surface accessibility in yeast indicates a uniformly loosely packed genome with canonical nucleosomes

10.6084/m9.figshare.13560022.v1figshare

Additional file 1 of Global histone protein surface accessibility in yeast indicates a uniformly loosely packed genome with canonical nucleosomes

10.6084/m9.figshare.13560022figshare

Additional file 10 of Common DNA sequence variation influences 3-dimensional conformation of the human genome

10.6084/m9.figshare.11981343.v1figshare

Additional file 10 of Common DNA sequence variation influences 3-dimensional conformation of the human genome

10.6084/m9.figshare.11981343figshare

Additional file 1 of Common DNA sequence variation influences 3-dimensional conformation of the human genome

10.6084/m9.figshare.11981346.v1figshare

Additional file 1 of Common DNA sequence variation influences 3-dimensional conformation of the human genome

10.6084/m9.figshare.11981346figshare

Additional file 1 of EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications

10.6084/m9.figshare.12097470.v1figshare

Additional file 1 of EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications

10.6084/m9.figshare.12097470figshare

Additional file 2 of BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

10.6084/m9.figshare.12177864.v1figshare

Additional file 2 of BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

10.6084/m9.figshare.12177864figshare

Additional file 2 of REPIC: a database for exploring the N6-methyladenosine methylome

10.6084/m9.figshare.12211349.v1figshare

Additional file 2 of REPIC: a database for exploring the N6-methyladenosine methylome

10.6084/m9.figshare.12211349figshare

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deepTools: a flexible platform for exploring deep-sequencing data

FAIR Checklist

DataRank Breakdown

Authors (5)

Funding (1 grants)

Impact

Open Access

Topics

Linked Datasets (25)

Annotations (Europe PMC)

Related Papers (10)