Manolis Maragkakis

Also affiliated with California University of Pennsylvania, Institute on Aging, National Institute on Aging

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 24 papers. Top paper: “Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19”.

Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19

Leukemia(2020)10.1038/s41375-019-0580-z

N/A

0.716DataRank · unranked

117 citations

Katharina E. Hayer, Ammar S. Naqvi, Sisi Zheng, Scarlett Y. Yang, Derek Oldridge +14 more

Mis-spliced transcripts generate de novo proteins in TDP-43-related ALS/FTD

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.23.525149

N/A

0.550DataRank · unranked

38 citations

Yue Qi, Anna‐Leigh Brown, Oscar G. Wilkins, Colleen Bereda, Cédric Belair +41 more

Full-length direct RNA sequencing uncovers stress granule-dependent RNA decay upon cellular stress

eLife(2024)10.7554/elife.96284

N/A

0.328DataRank · unranked

6 citations

Sulochan Malla, Vlastimil Martinek, Matthew J. Payea, Christopher T. Lee, Jessica Martin +5 more

Topoisomerase 3b facilitates piRNA biogenesis to promote transposon silencing and germ cell development

Cell Reports(2025)10.1016/j.celrep.2025.115495

N/A

0.241DataRank · unranked

4 citations

Weiping Shen, William Wen, Yuyoung Joo, Yutong Xue, Aaron Park +12 more

Ribonucleic Acid-Mediated Control of Protein Translation Under Stress

Antioxidants and Redox Signaling(2023)10.1089/ars.2023.0233

N/A

0DataRank · unranked

12 citations

Showkat Ahmad Dar, Sulochan Malla, Manolis Maragkakis, Matthew J. Payea

Biology of Stress Responses in Aging

PubMed(2023)10.59368/agingbio.20230001

N/A

0DataRank · unranked

9 citations

Luigi Ferrucci, Myriam Gorospe, Sulochan Malla, Maria Hatzoglou, Aleksandra Trifunović +13 more

Differential Poly(A) Tail Length Analysis Using Nanopore Sequencing

Methods in molecular biology(2023)10.1007/978-1-0716-3481-3_16

N/A

0DataRank · unranked

1 citations

Sulochan Malla, Cédric Belair, Manolis Maragkakis, Showkat Ahmad Dar

Gene body DNA hydroxymethylation restricts the magnitude of transcriptional changes during aging

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.15.528714

N/A

0DataRank · unranked

2 citations

Na Yang, Yan Sun, Marshall S. Dawkins, Rachel Munk, Cédric Belair +17 more

Senescence suppresses the integrated stress response and activates a stress-enhanced secretory phenotype

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.12.536613

N/A

0DataRank · unranked

2 citations

Showkat Ahmad Dar, Carlos Anerillas, Jennifer L. Martindale, Cédric Belair, Rachel Munk +10 more

Full-length direct RNA sequencing uncovers stress-granule dependent RNA decay upon cellular stress

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.31.555629

N/A

0DataRank · unranked

2 citations

Sulochan Malla, Vlastimil Martinek, Matthew J. Payea, Christopher T. Lee, Jessica Martin +5 more

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.17.567581

N/A

0DataRank · unranked

1 citations

Jessica Martin, Cédric Belair, Matthew J. Payea, Sulochan Malla, Panagiotis Alexiou +2 more

Modulation of Aub–TDRD interactions elucidates piRNA amplification and germplasm formation

Life Science Alliance(2020)10.26508/lsa.202000912

N/A

0DataRank · unranked

13 citations

Manolis Maragkakis, Panagiotis Alexiou, Paraskevi Sgourdou, Fadia Ibrahim, Daniel E. Palmieri +3 more

Senescence suppresses the integrated stress response and activates a stress-remodeled secretory phenotype

Molecular Cell(2024)10.1016/j.molcel.2024.10.003

N/A

0DataRank · unranked

31 citations

Showkat Ahmad Dar, Carlos Anerillas, Jennifer L. Martindale, Cédric Belair, Rachel Munk +10 more

Gene body DNA hydroxymethylation restricts the magnitude of transcriptional changes during aging

Nature Communications(2024)10.1038/s41467-024-50725-y

N/A

0DataRank · unranked

23 citations

Na Yang, Yan Sun, Marshall S. Dawkins, Rachel Munk, Cédric Belair +17 more

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

NAR Genomics and Bioinformatics(2024)10.1093/nargab/lqae116

N/A

0DataRank · unranked

5 citations

Jessica Martin, Cédric Belair, Matthew J. Payea, Sulochan Malla, Panagiotis Alexiou +2 more

Full-length direct RNA sequencing uncovers stress-granule dependent RNA decay upon cellular stress

eLife(2024)10.7554/elife.96284.1

N/A

0DataRank · unranked

2 citations

Sulochan Malla, Vlastimil Martinek, Matthew J. Payea, Christopher T. Lee, Jessica Martin +5 more

Reviewer #3 (Public Review): Full-length direct RNA sequencing uncovers stress-granule dependent RNA decay upon cellular stress

(2024)10.7554/elife.96284.2.sa1

N/A

0DataRank · unranked

0 citations

Sulochan Malla, Vlastimil Martinek, Matthew J Payea, Christopher T Lee, Jessica Martin +5 more

Spatial transcriptomics of the aging mouse brain reveals origins of inflammation in the white matter

Nature Communications(2025)10.1038/s41467-025-58466-2

N/A

0DataRank · unranked

27 citations

Chang-Yi Cui, Christopher T. Lee, Monica Bodogai, Na Yang, Changyou Shi +16 more

Transcript-guided targeted cell enrichment for scalable single-nucleus RNA sequencing

Cell Genomics(2025)10.1016/j.xgen.2025.101101

N/A

0DataRank · unranked

1 citations

Zehao Zhang, Andras Sziraki, Abdulraouf Abdulraouf, Abid Rehman, Zihan Xu +8 more

Cell-specific RNA isoform remodeling in the aging mouse brain

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.05.658133

N/A

0DataRank · unranked

0 citations

Megan F. Duffy, Katarína Grešová, Cédric Belair, Na Yang, Lin Wang +8 more

Mis-spliced transcripts generate de novo proteins in TDP-43–related ALS/FTD

Science Translational Medicine(2024)10.1126/scitranslmed.adg7162

N/A

0DataRank · unranked

166 citations

Yue Qi, Anna‐Leigh Brown, Oscar G. Wilkins, Colleen Bereda, Cédric Belair +46 more

TERA-Seq: true end-to-end sequencing of native RNA molecules for transcriptome characterization

Nucleic Acids Research(2021)10.1093/nar/gkab713

N/A

0DataRank · unranked

64 citations

Jan Oppelt, Manolis Maragkakis, Zissimos P. Mourelatos, Fadia Ibrahim

SamQL: a structured query language and filtering tool for the SAM/BAM file format

BMC Bioinformatics(2021)10.1186/s12859-021-04390-3

N/A

0DataRank · unranked

4 citations

Manolis Maragkakis, Christopher T. Lee

SamQL: A Structured Query Language and filtering tool for the SAM/BAM file format

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.03.429524

N/A

0DataRank · unranked

0 citations

Manolis Maragkakis, Christopher T. Lee