Stefan Bekiranov

Also affiliated with University of Virginia

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “Implementation of a Hamming distance–like genomic quantum classifier using inner products on ibmqx2 and ibmq_16_melbourne”.

Implementation of a Hamming distance–like genomic quantum classifier using inner products on ibmqx2 and ibmq_16_melbourne

Quantum Machine Intelligence(2020)10.1007/s42484-020-00017-7

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0DataRank · unranked

26 citations

Aakrosh Ratan, Michael J. McConnell, Stefan Bekiranov, Kunal Kathuria

Upregulation of human endogenous retrovirus-K (HML-2) mRNAs in hepatoblastoma: Identification of potential new immunotherapeutic targets and biomarkers

Journal of Pediatric Surgery(2020)10.1016/j.jpedsurg.2020.05.022

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0DataRank · unranked

14 citations

Aakrosh Ratan, Laurie R. Gray, Stefan Bekiranov, David Rekosh, Marie‐Louise Hammarskjöld +2 more

COCOA: coordinate covariation analysis of epigenetic heterogeneity

Genome biology(2020)10.1186/s13059-020-02139-4

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12 citations

Jason P. Smith, Stefan Bekiranov, Francine E. Garrett-Bakelman, Nathan C. Sheffield, John T. Lawson

Pausing sites of RNA polymerase II on actively transcribed genes are enriched in DNA double-stranded breaks

Journal of Biological Chemistry(2020)10.1074/jbc.ra119.011665

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0DataRank · unranked

39 citations

Karol Szlachta, Arkadi Manukyan, Heather M. Raimer, Manikarna Dinda, Stefan Bekiranov +2 more

A Machine Learning Model Utilizing a Novel SNP Shows Enhanced Prediction of Coronary Artery Disease Severity

Genes(2020)10.3390/genes11121446

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0DataRank · unranked

28 citations

Corban Cress, Anh V. Nguyen, Angela M. Taylor, Stefan Bekiranov, Coleen A. McNamara +1 more

Human endogenous retrovirus-K mRNA expression and genomic alignment data in hepatoblastoma

Data in Brief(2020)10.1016/j.dib.2020.105895

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0DataRank · unranked

6 citations

Aakrosh Ratan, Laurie R. Gray, Stefan Bekiranov, David Rekosh, Marie‐Louise Hammarskjöld +2 more

Upregulation of Human Endogenous Retrovirus-K (HML-2) mRNAs in hepatoblastoma: Identification of potential new immunotherapeutic targets and biomarkers

medRxiv(2020)10.1101/2020.02.28.20026260

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0DataRank · unranked

1 citations

Aakrosh Ratan, Laurie R. Gray, Stefan Bekiranov, David Rekosh, Marie‐Louise Hammarskjöld +2 more

COCOA: Coordinate covariation analysis of epigenetic heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.09.195289

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0DataRank · unranked

0 citations

Jason P. Smith, Stefan Bekiranov, Francine E. Garrett-Bakelman, Nathan C. Sheffield, John T. Lawson

Genomic and evolutionary portraits of disease relapse in acute myeloid leukemia

Leukemia(2021)10.1038/s41375-021-01153-0

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19 citations

Yaseswini Neelamraju, Timour Baslan, Duane C. Hassane, Agata Gruszczyńska, Marc Robert de Massy +19 more

Associations of immune cell homing gene signatures and infiltrates of lymphocyte subsets in human melanomas: discordance with CD163+ myeloid cell infiltrates

Journal of Translational Medicine(2021)10.1186/s12967-021-03044-5

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19 citations

Gulsun Erdag, Katie M. Leick, Stefan Bekiranov, Víctor H. Engelhard, Craig L. Slingluff +1 more

IGF1R and Src inhibition induce synergistic cytotoxicity in HNSCC through inhibition of FAK

Scientific Reports(2021)10.1038/s41598-021-90289-1

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0DataRank · unranked

11 citations

Adam Spencer, Sarah Hall, Jeremy J.P. Shaw, Julia Wulfkuhle, Emanuel F. Petricoin +4 more

Genome-scale chromatin interaction dynamic measurements for key components of the RNA Pol II general transcription machinery

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550532

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2 citations

Savera J. Shetty, Elizabeth A. Hoffman, Stefan Bekiranov, David Auble, Kristyna Kupkova

Mouse Model of Heart Attack and Stroke Shows Improved Survival with MPO Inhibition

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.06.561304

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0DataRank · unranked

0 citations

Rebecca A. Deaton, Heather Doviak, Megan A. Evans, Anita Salamon, Santosh Karnewar +13 more

Novel Mouse Model of Myocardial Infarction, Plaque Rupture, and Stroke Shows Improved Survival With Myeloperoxidase Inhibition

Circulation(2024)10.1161/circulationaha.123.067931

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0DataRank · unranked

53 citations

Rebecca A. Deaton, Anita Salamon, Heather Doviak, Vlad Serbulea, Victoria M. Milosek +16 more

Genome-scale chromatin binding dynamics of RNA Polymerase II general transcription machinery components

The EMBO Journal(2024)10.1038/s44318-024-00089-2

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0DataRank · unranked

7 citations

Savera J. Shetty, Elizabeth A. Hoffman, Stefan Bekiranov, David Auble, Kristyna Kupkova

DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data

Bioinformatics(2024)10.1093/bioinformatics/btae434

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4 citations

Nathan J. LeRoy, Stefan Bekiranov, Nathan C. Sheffield, Aidong Zhang, Guangzhi Xiong

DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery

Genes(2024)10.3390/genes15020144

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4 citations

Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang +1 more

Loss of TET2 increases B-1 cell number and IgM production while limiting CDR3 diversity

Frontiers in Immunology(2024)10.3389/fimmu.2024.1380641

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2 citations

Maria Murach, Cassidy M.R. Blackburn, Melissa A. Marshall, Katherine Root, Tanyaporn Pattarabanjird +6 more

Multi-omic analysis reveals VEGFR2, PI3K, and JNK mediate the small molecule induction of human iPSC-derived cardiomyocyte proliferation

iScience(2024)10.1016/j.isci.2024.110485

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0DataRank · unranked

2 citations

Kaitlyn L. Wintruba, Bethany Wissmann, Svyatoslav Tkachenko, Ewa Kubicka, Emily Farber +10 more

CXC-Chemokine-Receptor-Type-5 Expression on Circulating Naive B Cells Predicts Improvement After Cardiac Resynchronization Therapy

JACC Basic to Translational Science(2024)10.1016/j.jacbts.2024.09.011

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0DataRank · unranked

1 citations

Jesse D. Cochran, Chantel McSkimming, Hema Kothari, Zhaoxia Ma, Derek Bivona +3 more

Triple checkpoint blockade of PD-1, Tim-3, and Lag-3 enhances adoptive T cell immunotherapy in a mouse model of ovarian cancer

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2419888122

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0DataRank · unranked

4 citations

Asmaa O. Mohamed, Madison G. Burnett, Samantha C. St. Jean, Anders R. Nelson, Yapeng Su +11 more

The LMO2-LDB1-TAL1 complex regulates transcription networks in acute myeloid leukemia

Blood Neoplasia(2025)10.1016/j.bneo.2025.100186

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1 citations

Zhenjia Wang, Yaseswini Neelamraju, Yan Guo, B. Bishal Paudel, Cem Meydan +28 more

Unstable Coronary Artery Plaque Features in Humans Are Associated with Higher Frequency of Circulating CD56bright Natural Killer Cells

Journal of Vascular Research(2025)10.1159/000544884

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0DataRank · unranked

1 citations

C. Flora, Hema Kothari, Chantel McSkimming, Sydney D. Blimbaum, Corey M. Williams +4 more

CCAAT-enhancer binding protein delta functions as a tumor suppressor gene in acute myeloid leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.25.670309

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0DataRank · unranked

0 citations

Cem Meydan, Yaseswini Neelamraju, Zhenjia Wang, Hao Fan, Nicholas Dunham +16 more

Triple checkpoint blockade, but not anti-PD-1 alone, enhances engineered adoptive T cell therapy in a mouse model of advanced ovarian cancer 2090

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.054

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0DataRank · unranked

0 citations

Gabriel F. Alencar, Madison G. Burnett, Anders R. Nelson, Yapeng Su, Valentin Voillet +7 more

Toward Reliable Scientific Hypothesis Generation: Evaluating Truthfulness and Hallucination in Large Language Models

arXiv (Cornell University)(2025)10.48550/arxiv.2505.14599

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0DataRank · unranked

0 citations

Eric Xie, Corey M. Williams, Myles Kim, Amir Hassan Shariatmadari, Sikun Guo +3 more