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DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data

Bioinformatics(2024)10.1093/bioinformatics/btae434Source: DataRank Database

DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data is a research paper published in Bioinformatics (2024). On theSindex it has a DataRank of 0. It has been cited 4 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access4 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (6 grants)Impact (FWCI 0.82)OA: goldTopics (35)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Nathan J. LeRoy ORCID,Stefan Bekiranov ORCID,Nathan C. Sheffield ORCID,Aidong Zhang ORCID,Guangzhi Xiong ORCID

Live enrichment

PubMed:38950178 OpenAlex:https://openalex.org/W4400184612

National Science Foundation

Grant: 2313865

An Explainable Machine Learning Platform for Single Cell Data Analysis

National Institutes of Health

Grant: 1R01LM014012

National Institutes of Health

Grant: 1R01HG012558

National Institutes of Health

Grant: 5R01LM014012-03

Continually Adaptive Machine Learning Platform for Personalized Biomedical Literature Curation and Exploration

National Institutes of Health

Grant: 5R01HG012558-04

Novel methods for large-scale genomic interval comparison

National Institutes of Health

Grant: 5R01AI125581-03

Automated Forward Genetic Analysis of Adaptive Immunity

FWCI

0.82

Citation Percentile

0.7%

Citation Trend

2025

2026

goldLicense: cc-by

journalhttps://academic.oup.com/bioinformatics/article-pdf/40/7/btae434/58499624/btae434.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/40/7/btae434/58499624/btae434.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae434/58382310/btae434.pdf

journalhttps://doi.org/10.1093/bioinformatics/btae434

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38950178

Fields of Study

Single-cell and spatial transcriptomicsBioinformatics and Genomic NetworksGene expression and cancer classification0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

MeSH Terms

Deep LearningHumansSoftwareNeural Networks, ComputerSequence Analysis, RNAComputational BiologyGene Expression ProfilingSingle-Cell AnalysisTranscriptome

Keywords

Set (abstract data type)TranscriptomeComputer scienceData setComputational biologyGeneArtificial intelligenceBiologyGeneticsGene expressionProgramming languageOriginal PaperSequence Analysis, RNAGene Expression ProfilingDeep LearningHumansNeural Networks, ComputerSingle-Cell AnalysisSoftware