Irwin Jungreis

The Nature Conservancy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

44.6Author DataRank

Indexed papers

10in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 10 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

GENCODE reference annotation for the human and mouse genomes

Nucleic Acids Research(2018)10.1093/nar/gky955

Top 2%

8.2DataRank

Top 2%3533 citations

Mark Diekhans, Anne-Maud Ferreira, Todd A. Johnson, Irwin Jungreis, Jane E Loveland +59 more

Papers

Driven by 48 papers — median percentile 94. Top paper: “GENCODE reference annotation for the human and mouse genomes”.

GENCODE reference annotation for the human and mouse genomes

Nucleic Acids Research(2018)10.1093/nar/gky955

Top 2%

8.2DataRank

Top 2%3533 citations

Mark Diekhans, Anne-Maud Ferreira, Todd A. Johnson, Irwin Jungreis, Jane E Loveland +59 more

A high-resolution map of human evolutionary constraint using 29 mammals

Nature(2011)10.1038/nature10530

Top 2%

7.6DataRank

Top 2%1227 citations

Genome Institute at Washington University, Manuel Garber, Or Zuk, Alireza Heravi-Moussavi, Wouter Meuleman +49 more

GENCODE 2021

Nucleic Acids Research(2020)10.1093/nar/gkaa1087

Top 3%

6.9DataRank

Top 3%1480 citations

Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E Loveland, Shinichi Morishita +59 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

Nature Communications(2021)10.1038/s41467-021-22905-7

N/A

5.6DataRank · unranked

174 citations

Rachel Sealfon, Sharon L. R. Kardia, Irwin Jungreis

Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides

Analytical Chemistry(2016)10.1021/acs.analchem.6b00191

N/A

5.2DataRank · unranked

150 citations

Jolene K. Diedrich, Irwin Jungreis, Cynthia Donaldson, Joan Vaughan, Sharon L. R. Kardia +4 more

GENCODE: reference annotation for the human and mouse genomes in 2023

Nucleic Acids Research(2022)10.1093/nar/gkac1071

Top 4%

5.1DataRank

Top 4%663 citations

Sílvia Carbonell Sala, Mark Diekhans, Irwin Jungreis, Jane E Loveland, Jonathan M. Mudge +57 more

Standardized annotation of translated open reading frames

Nature Biotechnology(2022)10.1038/s41587-022-01369-0

Top 7%

3.2DataRank

Top 7%252 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Ferriol Calvet, Irwin Jungreis +31 more

GENCODE 2025: reference gene annotation for human and mouse

Nucleic Acids Research(2024)10.1093/nar/gkae1078

Top 8%

2.7DataRank

Top 8%348 citations

Sílvia Carbonell Sala, Mark Diekhans, Jose Gonzalez Martinez, Toby Hunt, Irwin Jungreis +51 more

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Science(2010)10.1126/science.1198374

Top 9%

2.4DataRank

Top 9%1089 citations

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Yanxiao Zhang, Richard S. Sandstrom +172 more

Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response

Journal of Biological Chemistry(2018)10.1074/jbc.m117.818526

N/A

2.3DataRank · unranked

80 citations

Irwin Jungreis, Ioanna Tzani, Michael Power, Ruslan I. Dmitriev, Ivaylo P. Ivanov +3 more

SARS-CoV-2 variants evolve convergent strategies to remodel the host response

Cell(2023)10.1016/j.cell.2023.08.026

N/A

2.1DataRank · unranked

113 citations

Ann-Kathrin Reuschl, Benjamin J. Polacco, Lucy G. Thorne, Manisha R. Ummadi, Chengjin Ye +88 more

Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy

Nature Genetics(2020)10.1038/s41588-020-0707-1

N/A

2.0DataRank · unranked

35 citations

Onuralp Söylemez, Aysegül Ozanturk, Niki Mourtzi, Sebastian Akle, Irwin Jungreis +16 more

Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits

Molecular Biology and Evolution(2020)10.1093/molbev/msaa240

N/A

1.9DataRank · unranked

118 citations

Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Mengya Zhao +43 more

Evolutionary Dynamics of Abundant Stop Codon Readthrough

Molecular Biology and Evolution(2016)10.1093/molbev/msw189

N/A

1.9DataRank · unranked

75 citations

Clara S. Chan, Robert M. Waterhouse, Gabriel Fields, Alireza Heravi-Moussavi, Sharon L. R. Kardia +1 more

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.945840

N/A

1.7DataRank · unranked

45 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +22 more

Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution

Virology(2021)10.1016/j.virol.2021.02.013

N/A

1.6DataRank · unranked

51 citations

Chase W. Nelson, Zachary Ardern, Yaara Finkel, Nevan J. Krogan, Kei Sato +8 more

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.02.130955

Top 13%

1.6DataRank

Top 13%24 citations

Rachel Sealfon, Sharon L. R. Kardia, Irwin Jungreis

FRESCo: finding regions of excess synonymous constraint in diverse viruses

Genome Biology(2015)10.1186/s13059-015-0603-7

N/A

1.2DataRank · unranked

43 citations

Alireza Heravi-Moussavi, Irwin Jungreis, Maxim Y. Wolf, Sharon L. R. Kardia, Pardis C. Sabeti +1 more

Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon

BMC Genetics(2020)10.1186/s12863-020-0828-7

N/A

1.1DataRank · unranked

41 citations

Irwin Jungreis, James C. Wright, Shinichi Morishita, Jyoti Sharma Choudhary, Andrew E. Firth +2 more

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

Bioinformatics(2011)10.1093/bioinformatics/btr209

N/A

1.0DataRank · unranked

1073 citations

Irwin Jungreis, Sharon L. R. Kardia, Alireza Heravi-Moussavi

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Development(2019)10.1242/dev.175265

N/A

1.0DataRank · unranked

33 citations

Philipp Wahle, Sascha Werner, Irwin Jungreis, Peter Menzel, Chinmay J. Shukla +7 more

Evolution of enhanced innate immune evasion by SARS-CoV-2

Nature(2021)10.1038/s41586-021-04352-y

N/A

0.900DataRank · unranked

402 citations

Mehdi Bouhaddou, Ann-Kathrin Reuschl, Lorena Zuliani-Alvarez, Benjamin J. Polacco, Adrian Pelin +41 more

Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid

Molecular Cell(2020)10.1016/j.molcel.2020.11.041

N/A

0.885DataRank · unranked

363 citations

Christine A. Roden, Mark A. Boerneke, Grace A. McLaughlin, Irwin Jungreis, Ethan J. Fritch +13 more

Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer

Nature Biotechnology(2021)10.1038/s41587-021-01021-3

N/A

0.853DataRank · unranked

294 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +24 more

Evidence of efficient stop codon readthrough in four mammalian genes

Nucleic Acids Research(2014)10.1093/nar/gku608

N/A

0.827DataRank · unranked

247 citations

Ming-Yuan Chou, Ivaylo P. Ivanov, Irwin Jungreis, Sharon L. R. Kardia, Pavel V. Baranov +3 more

Evidence of abundant stop codon readthrough in Drosophila and other metazoa

Genome Research(2011)10.1101/gr.119974.110

N/A

0.825DataRank · unranked

243 citations

Alireza Heravi-Moussavi, Rebecca Spokony, Clara S. Chan, Richard S. Sandstrom, Alec Victorsen +4 more

Discovery of Human sORF-Encoded Polypeptides (SEPs) in Cell Lines and Tissue

Journal of Proteome Research(2014)10.1021/pr401280w

N/A

0.795DataRank · unranked

199 citations

Carl C. Ward, Irwin Jungreis, Sarah A. Slavoff, Adam G. Schwaid, John Neveu +6 more

Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation

NAR Genomics and Bioinformatics(2019)10.1093/nargab/lqz023

N/A

0.738DataRank · unranked

24 citations

Federico Abascal, Irwin Jungreis, Fernando Pozo, Sharon L. R. Kardia, Shinichi Morishita +4 more

Mathematical analysis of Córdoba calcifediol trial suggests strong role for Vitamin D in reducing ICU admissions of hospitalized COVID-19 patients

medRxiv(2020)10.1101/2020.11.08.20222638

N/A

0.731DataRank · unranked

12 citations

Sharon L. R. Kardia, Irwin Jungreis

Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.11.147199

N/A

0.612DataRank · unranked

58 citations

Christine Roden, Mark A. Boerneke, Rachel Sealfon, Grace A. McLaughlin, Irwin Jungreis +11 more

PhyloCSF: a comparative genomics method to distinguish protein-coding and non-coding regions

Nature Precedings(2010)10.1038/npre.2010.4784.1

N/A

0.594DataRank · unranked

11 citations

Irwin Jungreis, Sharon L. R. Kardia, Michael Lin

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

Research Square(2020)10.21203/rs.3.rs-80345/v1

Top 37%

0.527DataRank

Top 37%9 citations

Rachel Sealfon, Sharon L. R. Kardia, Irwin Jungreis

Global landscape of the host response to SARS-CoV-2 variants reveals viral evolutionary trajectories

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.19.512927

N/A

0.524DataRank · unranked

14 citations

Ann‐Kathrin Reuschl, Benjamin J. Polacco, Lucy G. Thorne, Manisha R. Ummadi, Chengjin Ye +72 more

Heterologous Stop Codon Readthrough of Metazoan Readthrough Candidates in Yeast

PLoS ONE(2013)10.1371/journal.pone.0059450

N/A

0.440DataRank · unranked

8 citations

Irwin Jungreis, Sharon L. R. Kardia, Clara S. Chan

Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/362707

N/A

0.403DataRank · unranked

4 citations

Onuralp Söylemez, Aysegül Ozanturk, Sebastian Akle, Irwin Jungreis, Jean Muller +16 more

Translon: a single term for translated regions

Nature Methods(2025)10.1038/s41592-025-02810-3

N/A

0.389DataRank · unranked

11 citations

Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins +164 more

Loose ends: almost one in five human genes still have unresolved coding status

Nucleic Acids Research(2018)10.1093/nar/gky1146

N/A

0.339DataRank · unranked

4 citations

David Juan, Irwin Jungreis, Sharon L. R. Kardia, Laura Martinez-Gomez, Maria Rigau +7 more

Conflicting and Ambiguous Names of Overlapping ORFs in SARS-CoV-2: A Homology-Based Resolution

Preprints.org(2020)10.20944/preprints202012.0048.v1

N/A

0.327DataRank · unranked

5 citations

Chase W. Nelson, Zachary Ardern, Yaara Finkel, Nevan J. Krogan, Kei Sato +8 more

Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits

Molecular Biology and Evolution(2021)10.1093/molbev/msab100

N/A

0.228DataRank · unranked

3 citations

Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Mengya Zhao +43 more

Programmed ribosomal frameshifting during PLEKHM2 mRNA decoding generates a constitutively active proteoform that supports myocardial function

Science Advances(2025)10.1126/sciadv.ady1742

N/A

0.208DataRank · unranked

3 citations

Raffaella De Pace, Ningyu Ding, Jianchao Zhang, Irwin Jungreis, Gionmattia Carancini +10 more

Biophysical characterization of high-confidence, small human proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589296

N/A

0.165DataRank · unranked

2 citations

Irwin Jungreis, Jeffre Allen, Christina Cleveland, Shinichi Morishita, Sharon L. R. Kardia +4 more

Proteogenomics-enabled discovery of novel small open reading frame (sORF)-encoded polypeptides in human and mouse tissues

Nucleic Acids Research(2025)10.1093/nar/gkaf687

N/A

0.104DataRank · unranked

1 citations

Yuting Xie, Lingshuo Wang, Irwin Jungreis, Tong Ou, Sharon L. R. Kardia +3 more

Biophysical characterization of high-confidence, small human proteins

Biophysical Reports(2024)10.1016/j.bpr.2024.100167

N/A

0DataRank · unranked

3 citations

Irwin Jungreis, Jeffre Allen, Christina Cleveland, Jonathan M. Mudge, Manolis Kellis +3 more

Programmed ribosomal frameshifting during PLEKHM2 mRNA decoding generates a constitutively active proteoform that supports myocardial function

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.30.610563

N/A

0DataRank · unranked

1 citations

Raffaella De Pace, Ningyu Ding, Jianchao Zhang, Irwin Jungreis, Gionmattia Carancini +10 more

Translation Initiation Site Profiling Reveals Widespread Synthesis of Non-AUG-Initiated Protein Isoforms in Yeast

Cell Systems(2020)10.1016/j.cels.2020.06.011

N/A

0DataRank · unranked

78 citations

Andrea L. Higdon, Ina Hollerer, Alexander P. Fields, Irwin Jungreis, Paige D. Diamond +4 more

Genus-wide characterization of bumblebee genomes reveals variation associated with key ecological and behavioral traits of pollinators

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.29.122879

N/A

0DataRank · unranked

0 citations

Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Gregg W.C. Thomas +42 more

Evolutionary dynamics of abundant stop codon readthrough in Anopheles and Drosophila

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/051557

N/A

0DataRank · unranked

0 citations

Clara S. Chan, Robert M. Waterhouse, Gabriel Fields, Alireza Heravi-Moussavi, Sharon L. R. Kardia +1 more

Irwin Jungreis

Indexed papers

Top data-sharing exemplar

Papers