🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Marcel Ramos

The Graduate Center, CUNY

ORCID: 0000-0002-3242-0582
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
12.5Author DataRank

Indexed papers

8in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468
Top 2%
7.1DataRank
Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Papers

Driven by 16 papers — median percentile 57. Top paper: “Accessible, curated metagenomic data through ExperimentHub”.

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468
Top 2%
7.1DataRank
Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

Cell Genomics(2022)10.1016/j.xgen.2021.100085
N/A
3.9DataRank · unranked
132 citations

Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll +95 more

Accessible, curated metagenomic data through ExperimentHub

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/103085
Top 10%
2.0DataRank
Top 10%65 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

HGNChelper: identification and correction of invalid gene symbols for human and mouse

F1000Research(2020)10.12688/f1000research.28033.1
Top 12%
1.7DataRank
Top 12%44 citations

Jasmine Abdelnabi, Ragheed Al-Dulaimi, Ayush Aggarwal, Marcel Ramos, Sean Davis +3 more

HGNChelper: identification and correction of invalid gene symbols for human and mouse

F1000Research(2022)10.12688/f1000research.28033.2
N/A
1.3DataRank · unranked
27 citations

Jasmine Abdelnabi, Ragheed Al-Dulaimi, Ayush Aggarwal, Marcel Ramos, Sean Davis +3 more

Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma

Cancer Research(2020)10.1158/0008-5472.can-20-0521
N/A
0.728DataRank · unranked
127 citations

Sehyun Oh, Marcel Ramos, Lucas Schiffer, Rebecca S. LaRue, Christine Henzler +16 more

lefser: implementation of metagenomic biomarker discovery tool, LEfSe, in R

Bioinformatics(2024)10.1093/bioinformatics/btae707
N/A
0.596DataRank · unranked
52 citations

Samuel David Gamboa-Tuz, Marcel Ramos, Nicola Segata, Levi Waldron, Sehyun Oh +1 more

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases

Nature Communications(2022)10.1038/s41467-022-31411-3
N/A
0.523DataRank · unranked
14 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

Nature Communications(2025)10.1038/s41467-025-66888-1
Top 41%
0.461DataRank
Top 41%17 citations

Giacomo Antonello, Lucas Schiffer, Davide Golzato, Andres Wokaty, Francesco Beghini +32 more

Curated Single Cell Multimodal Landmark Datasets for R/Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466079
Top 45%
0.415DataRank
Top 45%4 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +7 more

Curated single cell multimodal landmark datasets for R/Bioconductor

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011324
Top 48%
0.375DataRank
Top 48%7 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +6 more

Orchestrating Spatial Transcriptomics Analysis with Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.20.688607
Top 59%
0.260DataRank
Top 59%3 citations

Yixing Dong, Ilaria Billato, Peiying Cai, Martin Emons, Samuel Gunz +29 more

Learning and teaching biological data science in the Bioconductor community

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012925
N/A
0.241DataRank · unranked
4 citations

Frederick J. Tan, Fabricio Almeida‐Silva, Robert Castelo, Aedín C. Culhane, Sean Davis +13 more

GenomicSuperSignature: interpretation of RNA-seq experiments through robust, efficient comparison to public databases

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445900
Top 78%
0.104DataRank
Top 78%1 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

bamSliceR : a Bioconductor package for rapid, cross-cohort variant and allelic bias analysis

Bioinformatics Advances(2024)10.1093/bioadv/vbaf098
N/A
0DataRank · unranked
1 citations

Lauren Harmon, Eve Gardner, Xiaotu Ma, Josiah Harsh, Zhaoyu Xue +5 more

RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor

Bioinformatics(2023)10.1093/bioinformatics/btad330
N/A
0DataRank · unranked
1 citations

Martin Morgan, Ludwig Geistlinger, Vincent J. Carey, Levi Waldron, Marcel Ramos