Qin Ma

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.9Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease

iScience(2020)10.1016/j.isci.2020.101769

Top 7%

3.3DataRank

Top 7%154 citations

Cankun Wang, Ren Qi, Hongjun Fu, Qin Ma, Jing Jiang

Papers

Driven by 104 papers — median percentile 60. Top paper: “Single-cell biological network inference using a heterogeneous graph transformer”.

Single-cell biological network inference using a heterogeneous graph transformer

Nature Communications(2023)10.1038/s41467-023-36559-0

N/A

3.5DataRank · unranked

186 citations

Xiaoying Wang, Jingxian Li, Cankun Wang, Tong Xiao, Yuntao Liu +15 more

scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease

iScience(2020)10.1016/j.isci.2020.101769

Top 7%

3.3DataRank

Top 7%154 citations

Cankun Wang, Ren Qi, Hongjun Fu, Qin Ma, Jing Jiang

NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health

Nature Aging(2022)10.1038/s43587-022-00326-5

N/A

2.1DataRank · unranked

128 citations

Patty J. Lee, Christopher C. Benz, Philip D. Blood, Katy Börner, Judith Campisi +93 more

A single-cell and spatial RNA-seq database for Alzheimer’s disease (ssREAD)

Nature Communications(2024)10.1038/s41467-024-49133-z

Top 16%

1.3DataRank

Top 16%62 citations

Diana Acosta, Megan E. McNutt, Jiang Bian, Anjun Ma, Hongjun Fu +2 more

Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system

Nature Neuroscience(2024)10.1038/s41593-024-01827-9

N/A

0.613DataRank · unranked

18 citations

Trygve E. Bakken, Aparna Bhaduri, Chintan Chhatbar, Mariella G. Filbin, David Gate +21 more

Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.08.029

N/A

0.598DataRank · unranked

53 citations

Fei He, Juexin Wang, Shuo Chen, Jingyi Li, Jixin Liu +14 more

Sex-biased adaptive immune regulation in cancer development and therapy

iScience(2022)10.1016/j.isci.2022.104717

N/A

0.524DataRank · unranked

32 citations

Tong Xiao, Hyunwoo Kwon, Katharine A. Collier, Yuzhou Chang, Hany Abdel-Hafiz +9 more

A Single-cell and Spatial RNA-seq Database for Alzheimer’s Disease (ssREAD)

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.08.556944

Top 40%

0.480DataRank

Top 40%9 citations

Diana Acosta, Megan E. McNutt, Jiang Bian, Anjun Ma, Hongjun Fu +2 more

A graph neural network model to estimate cell-wise metabolic flux using single cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.23.310656

N/A

0.442DataRank · unranked

18 citations

Wennan Chang, Pengtao Dang, Xiaoyu Lu, Changlin Wan, Silpa Gampala +8 more

Use of scREAD to explore and analyze single-cell and single-nucleus RNA-seq data for Alzheimer’s disease

STAR Protocols(2021)10.1016/j.xpro.2021.100513

Top 44%

0.420DataRank

Top 44%7 citations

Yujia Xiang, Hongjun Fu, Qin Ma, Cankun Wang

Multi-scaled transcriptomics of chronically inflamed nasal epithelium reveals immune-epithelial dynamics and tissue remodeling in nasal polyp formation

Immunity(2025)10.1016/j.immuni.2025.08.009

N/A

0.416DataRank · unranked

15 citations

Tsuguhisa Nakayama, Bokai Zhu, Ivan T. Lee, Jason Yeung, Yao Yu Yeo +31 more

The new microbiome on the block: challenges and opportunities of using human tumor sequencing data to study microbes

Nature Methods(2025)10.1038/s41592-025-02807-y

N/A

0.416DataRank · unranked

15 citations

Anjun Ma, Evan Johnson, Charis Eng, Subhajyoti De, Sizun Jiang +4 more

scREAD: A single-cell RNA-Seq database for Alzheimer’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.06.240044

Top 46%

0.393DataRank

Top 46%8 citations

Cankun Wang, Ren Qi, Hongjun Fu, Qin Ma, Jing Jiang

Dimension-agnostic and granularity-based spatially variable gene identification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.21.533713

N/A

0.337DataRank · unranked

4 citations

Jinpu Li, Skyler T. Kramer, Li Su, Yuzhou Chang, Chunhui Xu +3 more

Targeting TGFβ docking receptor glycoprotein A repetitions predominant (GARP) via novel chimeric antigen receptor (CAR)-T cell platform to treat glioblastoma

Neuro-Oncology(2025)10.1093/neuonc/noaf195

N/A

0.270DataRank · unranked

4 citations

Daniel Kreatsoulas, Hakan Çam, Chelsea Bolyard, Yuzhou Chang, Jay K. Mandula +16 more

A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.24.541982

N/A

0.208DataRank · unranked

3 citations

Anjun Ma, Megan E. McNutt, Rebecca Hoyd, Caroline E. Wheeler, Lary A. Robinson +24 more

Epigenetic Modulation, Intratumoral Microbiome, and Immunity in Early-Onset Colorectal Cancer

Cancer Research Communications(2025)10.1158/2767-9764.crc-25-0177

N/A

0.170DataRank · unranked

2 citations

Rebecca Hoyd, Ayse S. Yilmaz, Jiangjiang Zhu, YunZhou Liu, Malvenderjit S. Jagjit Singh +31 more

Spatially resolved transcriptomics reveals gene signatures underlying the vulnerability of human middle temporal gyrus in Alzheimer's disease

Research Square(2021)10.21203/rs.3.rs-855234/v1

N/A

0DataRank · unranked

3 citations

Yuzhou Chang, Liangping Li, Diana Acosta, Cody Morrison, Cankun Wang +7 more

Treatment with Soluble CD24 Attenuates COVID-19-Associated Systemic Immunopathology

medRxiv(2021)10.1101/2021.08.18.21262258

N/A

0DataRank · unranked

3 citations

Carter Allen, Anna E. Vilgelm, Brian Riesenberg, Kevin P. Weller, Kelsi Reynolds +25 more

Epigenetic Remodeling by Vitamin C Potentiates the Differentiation of Mouse and Human Plasma Cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.15.460473

N/A

0DataRank · unranked

2 citations

Ana Alamonte-Loya, Fang-Yun Lay, Eric C. Johnson, Edahí González‐Avalos, Jieyun Yin +5 more

Microglia coordinate cellular interactions during spinal cord repair in mice

Nature Communications(2022)10.1038/s41467-022-31797-0

N/A

0DataRank · unranked

292 citations

Yang Li, Cankun Wang, Anjun Ma, Qi Guo, Yi Li +13 more

Deep transfer learning of cancer drug responses by integrating bulk and single-cell RNA-seq data

Nature Communications(2022)10.1038/s41467-022-34277-7

N/A

0DataRank · unranked

205 citations

Xiaoying Wang, Anjun Ma, Qi‐En Wang, BingQiang Liu, Lang Li +3 more

Spatially resolved transcriptomics reveals genes associated with the vulnerability of middle temporal gyrus in Alzheimer’s disease

Acta Neuropathologica Communications(2022)10.1186/s40478-022-01494-6

N/A

0DataRank · unranked

132 citations

Yuzhou Chang, Liangping Li, Diana Acosta, Yang Li, Qi Guo +15 more

Deep learning shapes single-cell data analysis

Nature Reviews Molecular Cell Biology(2022)10.1038/s41580-022-00466-x

N/A

0DataRank · unranked

121 citations

Dong Xu, Qin Ma

Durability of Booster mRNA Vaccine against SARS-CoV-2 BA.2.12.1, BA.4, and BA.5 Subvariants

New England Journal of Medicine(2022)10.1056/nejmc2210546

N/A

0DataRank · unranked

87 citations

Julia N. Faraone, John P. Evans, Yi-Min Zheng, Lianbo Yu, Qin Ma +7 more

Wolframin is a novel regulator of tau pathology and neurodegeneration

Acta Neuropathologica(2022)10.1007/s00401-022-02417-4

N/A

0DataRank · unranked

42 citations

Diana Acosta, Liangping Li, Jiawen Liang, Yuzhou Chang, Cankun Wang +25 more

The use of single-cell multi-omics in immuno-oncology

Nature Communications(2022)10.1038/s41467-022-30549-4

N/A

0DataRank · unranked

34 citations

Gang Xin, Qin Ma, Anjun Ma

FACT subunit SUPT16H associates with BRD4 and contributes to silencing of interferon signaling

Nucleic Acids Research(2022)10.1093/nar/gkac645

N/A

0DataRank · unranked

22 citations

Zhenyu Wu, Jun‐Gyu Park, Guillaume Fiches, Tai-Wei Li, Qin Ma +6 more

Selective targeting of GARP-LTGFβ axis in the tumor microenvironment augments PD-1 blockade via enhancing CD8+ T cell antitumor immunity

Journal for ImmunoTherapy of Cancer(2022)10.1136/jitc-2022-005433

N/A

0DataRank · unranked

28 citations

Yuzhou Chang, No‐Joon Song, Xingjun Wu, Dongjun Chung, Brian Riesenberg +17 more

scGNN 2.0: a graph neural network tool for imputation and clustering of single-cell RNA-Seq data

Bioinformatics(2022)10.1093/bioinformatics/btac684

N/A

0DataRank · unranked

26 citations

Hao Cheng, Anjun Ma, Yang Li, Juexin Wang, Dong Xu +2 more

SUSD2 suppresses CD8+ T cell antitumor immunity by targeting IL-2 receptor signaling

Nature Immunology(2022)10.1038/s41590-022-01326-8

N/A

0DataRank · unranked

21 citations

Weipeng Gong, Anjun Ma, Jianwen Chen, Maria Velegraki, Hong Dong +14 more

Utility of machine learning in developing a predictive model for early-age-onset colorectal neoplasia using electronic health records

PLoS ONE(2022)10.1371/journal.pone.0265209

N/A

0DataRank · unranked

18 citations

Jing Zhao, Abraham K. Badu‐Tawiah, Peter P. Stanich, Fred K. Tabung, Darrell M. Gray +4 more

Pan-Cancer Analysis of Canonical and Modified miRNAs Enhances the Resolution of the Functional miRNAome in Cancer

Cancer Research(2022)10.1158/0008-5472.can-22-0240

N/A

0DataRank · unranked

15 citations

Luisa Tomasello, Gian Luca Rampioni Vinciguerra, Pierluigi Gasparini, Yujia Xiang, Marina Bagnoli +8 more

AIB1 is a novel target of the high‐risk HPV E6 protein and a biomarker of cervical cancer progression

Journal of Medical Virology(2022)10.1002/jmv.27795

N/A

0DataRank · unranked

12 citations

Aleksandra Dakic, Megan E. Spurgeon, Francisco Sáenz, Bhaskar Kallakury, Bo Zhao +9 more

A guideline for the statistical analysis of compositional data in immunology

Communications for Statistical Applications and Methods(2022)10.29220/csam.2022.29.4.453

N/A

0DataRank · unranked

11 citations

Zequn Sun, Michael Greenacre, Qin Ma, Dongjun Chung, Young Min Kim +1 more

Molecular Regulation of Heme Oxygenase-1 Expression by E2F Transcription Factor 2 in Lung Fibroblast Cells: Relevance to Idiopathic Pulmonary Fibrosis

Biomolecules(2022)10.3390/biom12101531

N/A

0DataRank · unranked

10 citations

Sarah Taleb, Heather Wang, Narasimham L. Parinandi, Daniel J. Kass, Mauricio Rojas +5 more

Sampling and ranking spatial transcriptomics data embeddings to identify tissue architecture

Frontiers in Genetics(2022)10.3389/fgene.2022.912813

N/A

0DataRank · unranked

3 citations

Yan Wang, Yanchun Liang, Yang Yu, Jingyi Li, Qin Ma +3 more

Systematic analysis of cellular crosstalk reveals a role for SEMA6D-TREM2 regulating microglial function in Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.11.516215

N/A

0DataRank · unranked

9 citations

Gina M. Finan, Logan Brase, Shuo Chen, Qi Guo, Abhirami Kannan +20 more

Spatial omics representation and functional tissue module inference using graph Fourier transform

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.10.519929

N/A

0DataRank · unranked

4 citations

Jixin Liu, Anjun Ma, Sizun Jiang, Jordan E. Krull, Yao Yu Yeo +10 more

Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.15.520582

N/A

0DataRank · unranked

3 citations

Anjun Ma, Yi‐Zhong Wang, Qi Guo, Cankun Wang, Shuo Chen +4 more

NIH SenNet Consortium: Mapping Senescent Cells in the Human Body to Understand Health and Disease

Preprints.org(2022)10.20944/preprints202207.0160.v1

N/A

0DataRank · unranked

1 citations

Philip D. Blood, Katy Börner, Judith Campisi, Feng Chen, Heike E. Daldrup‐Link +38 more

LRT: T Cell Trajectory Inference by Integrative Analysis of Single-Cell TCR-seq and RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.14.488320

N/A

0DataRank · unranked

0 citations

Gang Xin, Qin Ma, Dongjun Chung, Juan Xie

NIH SenNet Consortium: Mapping Senescent Cells in the Human Body to Understand Health and Disease

Preprints.org(2022)10.20944/preprints202207.0160.v2

N/A

0DataRank · unranked

0 citations

Philip D. Blood, Katy Börner, Judith Campisi, Feng Chen, Heike E. Daldrup‐Link +38 more

Computational methods and challenges in analyzing intratumoral microbiome data

Trends in Microbiology(2023)10.1016/j.tim.2023.01.011

N/A

0DataRank · unranked

34 citations

Zhaoqian Liu, Anjun Ma, Zihai Li, BingQiang Liu, Qin Ma +1 more

Dimension-agnostic and granularity-based spatially variable gene identification using BSP

Nature Communications(2023)10.1038/s41467-023-43256-5

N/A

0DataRank · unranked

31 citations

Jinpu Li, Skyler T. Kramer, Li Su, Yuzhou Chang, Chunhui Xu +5 more

Promoting patient engagement in cancer genomics research programs: An environmental scan

Frontiers in Genetics(2023)10.3389/fgene.2023.1053613

N/A

0DataRank · unranked

19 citations

Norah L. Crossnohere, Jonathan Paskett, Neena Thomas, Heather Hampel, Qin Ma +4 more

Identification of HPV oncogene and host cell differentiation associated cellular heterogeneity in cervical cancer via single‐cell transcriptomic analysis

Journal of Medical Virology(2023)10.1002/jmv.29060

N/A

0DataRank · unranked

12 citations

Cankun Wang, Anjun Ma, Abdul Qawee Rani, Mingjue Luo, Jenny Li +3 more

The tumor microbiome as a predictor of outcomes in patients with metastatic melanoma treated with immune checkpoint inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.24.542123

N/A

0DataRank · unranked

5 citations

Samuel S. Coleman, Rebecca Hoyd, Louis Denko, Carlos H.F. Chan, Michelle L. Churchman +19 more

MarsGT: Multi-omics analysis for rare population inference using single-cell graph transformer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.15.553454

N/A

0DataRank · unranked

5 citations

Maoteng Duan, Jingxian Li, Anjun Ma, Dong Xu, Zihai Li +3 more

DAP12 deficiency alters microglia-oligodendrocyte communication and enhances resilience against tau toxicity

Research Square(2023)10.21203/rs.3.rs-3454358/v1

N/A

0DataRank · unranked

4 citations

Hao Chen, Li Fan, Qi Guo, Man Ying Wong, Fangmin Yu +15 more

Repression of ferroptotic cell death by mitochondrial calcium signaling

Research Square(2023)10.21203/rs.3.rs-3029860/v1

N/A

0DataRank · unranked

3 citations

Jianwen Chen, Bao Zhao, Shen Wang, Anjun Ma, Hong Dong +13 more

Identification of HPV oncogene and host cell differentiation associated cellular heterogeneity in cervical cancer via single-cell transcriptomic analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.10.552878

N/A

0DataRank · unranked

2 citations

Cankun Wang, Anjun Ma, Abdul Qawee Rani, Mingjue Luo, Jenny Li +3 more

The tumor microbiome reacts to hypoxia and can influence response to radiation treatment in colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.01.555936

N/A

0DataRank · unranked

2 citations

Rebecca Hoyd, McKenzie Kreamer, Caroline E. Wheeler, Dennis J. Grencewicz, Fouad Choueiry +27 more

Dimension-agnostic and granularity-based spatially variable gene identification

(2023)10.21203/rs.3.rs-2687726/v1

N/A

0DataRank · unranked

0 citations

Jinpu Li, Skyler T. Kramer, Li Su, Yuzhou Chang, Chunhui Xu +3 more

Data from Pan-Cancer Analysis of Canonical and Modified miRNAs Enhances the Resolution of the Functional miRNAome in Cancer

(2023)10.1158/0008-5472.c.6514064.v1

N/A

0DataRank · unranked

0 citations

Luisa Tomasello, Gian Luca Rampioni Vinciguerra, Pierluigi Gasparini, Yujia Xiang, Marina Bagnoli +8 more

Spatial and functional targeting of intratumoral Tregs reverses CD8+ T cell exhaustion and promotes cancer immunotherapy

Journal of Clinical Investigation(2024)10.1172/jci180080

N/A

0DataRank · unranked

35 citations

Maria Velegraki, Yi Wang, Jay K. Mandula, Yuzhou Chang, Weiwei Liu +11 more

Graph Fourier transform for spatial omics representation and analyses of complex organs

Nature Communications(2024)10.1038/s41467-024-51590-5

N/A

0DataRank · unranked

29 citations

Jixin Liu, Yi Jiang, Anjun Ma, Yao Yu Yeo, Qi Guo +11 more

The Tumor Microbiome Reacts to Hypoxia and Can Influence Response to Radiation Treatment in Colorectal Cancer

Cancer Research Communications(2024)10.1158/2767-9764.crc-23-0367

N/A

0DataRank · unranked

24 citations

Rebecca Hoyd, McKenzie Kreamer, Caroline E. Wheeler, Dennis J. Grencewicz, Fouad Choueiry +27 more

Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data

Briefings in Bioinformatics(2024)10.1093/bib/bbae369

N/A

0DataRank · unranked

14 citations

Anjun Ma, Yizhong Wang, Qi Guo, Cankun Wang, Hongjun Fu +3 more

Targeting metabolic sensing switch GPR84 on macrophages for cancer immunotherapy

Cancer Immunology Immunotherapy(2024)10.1007/s00262-023-03603-3

N/A

0DataRank · unranked

11 citations

Anjun Ma, Ruohan Zhang, Chen Yao, Chelsea Bolyard, Bao Zhao +11 more

scDOT: optimal transport for mapping senescent cells in spatial transcriptomics

Genome biology(2024)10.1186/s13059-024-03426-0

N/A

0DataRank · unranked

7 citations

Lorena Rosas, Timur O. Khaliullin, Peiran Jiang, Euxhen Hasanaj, José Antonio Ovando-Ricárdez +13 more

A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Cancer Research Communications(2024)10.1158/2767-9764.crc-23-0213

N/A

0DataRank · unranked

7 citations

Anjun Ma, Yingjie Li, Megan E. McNutt, Shiqi Zhang, Jiangjiang Zhu +27 more

Human iPSC-Based Model of COPD to Investigate Disease Mechanisms, Predict SARS-COV-2 Outcome, and Test Preventive Immunotherapy

Stem Cells(2024)10.1093/stmcls/sxad094

N/A

0DataRank · unranked

6 citations

Aigul Moldobaeva, Elise Gubbins, Sydney Clark, Mia Madel Alfajaro, Craig B. Wilen +13 more

Abnormal Progenitor Cell Differentiation and Cardiomyocyte Proliferation in Hypoplastic Right Heart Syndrome

Circulation(2024)10.1161/circulationaha.123.064213

N/A

0DataRank · unranked

6 citations

Cankun Wang, Shiqiao Ye, Zhaohui Xu, Hui Lin, Karen Texter +6 more

Cell-Free RNA Signatures in Maternal Blood with Fetal Congenital Heart Disease

Circulation Research(2024)10.1161/circresaha.124.325024

N/A

0DataRank · unranked

2 citations

Zhaohui Xu, Yang Yu, Shiqiao Ye, Cankun Wang, Jerry Wang +7 more

Analysis of community connectivity in spatial transcriptomics data

Frontiers in Applied Mathematics and Statistics(2024)10.3389/fams.2024.1403901

N/A

0DataRank · unranked

1 citations

Kyeong Joo Jung, Carter Allen, Yuzhou Chang, Paul, Subhadeep, Zihai Li +3 more

Graph Fourier transform for spatial omics representation and analyses of complex organs

Research Square(2024)10.21203/rs.3.rs-3952048/v1

N/A

0DataRank · unranked

4 citations

Jixin Liu, Yi Jiang, Anjun Ma, Yao Yu Yeo, Qi Guo +11 more

Epstein-Barr Virus Orchestrates Spatial Reorganization and Immunomodulation within the Classic Hodgkin Lymphoma Tumor Microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.05.583586

N/A

0DataRank · unranked

3 citations

Huaying Qiu, Yunhao Bai, Bokai Zhu, Yuzhou Chang, Jason Yeung +31 more

A platform for the biomedical application of large language models

Nature Biotechnology(2025)10.1038/s41587-024-02534-3

N/A

0DataRank · unranked

53 citations

Shaohong Feng, Noah Bruderer, Andreas Maier, A. Dı́az, Amy Strange +38 more

Brain-derived tau oligomer polymorphs: distinct aggregations, stability profiles, and biological activities

Communications Biology(2025)10.1038/s42003-025-07499-w

N/A

0DataRank · unranked

32 citations

S.J. Park, Urmi Sengupta, Nicha Puangmalai, Nemil Bhatt, Nikita Shchankin +11 more

Sex differences in bladder cancer: understanding biological and clinical implications

Biology of Sex Differences(2025)10.1186/s13293-025-00715-6

N/A

0DataRank · unranked

19 citations

Biplab Singha, Hany Abdel-Hafiz, Maria Velegraki, Debasish Sundi, Swati Satturwar +12 more

Tumor-associated NK Cells Regulate Distinct CD8+ T-cell Differentiation Program in Cancer and Contribute to Resistance against Immune Checkpoint Blockers

Cancer Discovery(2025)10.1158/2159-8290.cd-24-1232

N/A

0DataRank · unranked

18 citations

Juan Xie, Kyeong Joo Jung, Yi Wang, Joanna Poźniak, Niccolò Roda +20 more

O-GlcNAc transferase plays dual antiviral roles by integrating innate immunity and lipid metabolism

Nature Communications(2025)10.1038/s41467-025-63085-y

N/A

0DataRank · unranked

8 citations

Chenxi Liang, Junjie Zhang, Weidong Wu, Nitesh Kumar, Zihao Liu +16 more

Operationalizing a research-oriented learning healthcare system across covered entities: cross-institutional strategies and innovations

npj Health Systems(2025)10.1038/s44401-025-00051-2

N/A

0DataRank · unranked

4 citations

Christopher W. Bartlett, Gabriel Alain, Thomas Bentley, Carol R. Bradford, John F. P. Bridges +24 more

DAP12 deletion reduces neuronal SLIT2 and demyelination and enhances brain resilience in female tauopathy mice

Molecular Neurodegeneration(2025)10.1186/s13024-025-00903-3

N/A

0DataRank · unranked

3 citations

Li Fan, Qi Guo, Man Ying Wong, Jingjie Zhu, Nessa Foxe +17 more

scBSP: a fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data

Bioinformatics(2025)10.1093/bioinformatics/btaf554

N/A

0DataRank · unranked

2 citations

Mauminah Raina, Yiqing Wang, Chunhui Xu, Li Su, Qi Guo +6 more

Relation equivariant graph neural networks to explore the mosaic-like tissue architecture of kidney diseases on spatially resolved transcriptomics

Bioinformatics(2025)10.1093/bioinformatics/btaf303

N/A

0DataRank · unranked

2 citations

Hao Cheng, Ricardo Melo Ferreira, Treyden Stansfield, Chandrima Modak, Ying-Hua Cheng +6 more

Ad hoc, post hoc and intrinsic-hoc in bioinformatics

Nature Biotechnology(2025)10.1038/s41587-025-02852-0

N/A

0DataRank · unranked

1 citations

Hao Cheng, Yi Jiang, Anjun Ma, Dong Xu, Qin Ma

Activation of USP30 Disrupts Endothelial Cell Function and Aggravates Acute Lung Injury Through Regulating the S‐Adenosylmethionine Cycle

Advanced Science(2025)10.1002/advs.202512807

N/A

0DataRank · unranked

1 citations

Jinshan He, Jiaxing Miao, Nargis Shaheen, Boyu Xia, Cankun Wang +7 more

A visual–omics foundation model to bridge histopathology image with transcriptomics

Research Square(2025)10.21203/rs.3.rs-5183775/v1

N/A

0DataRank · unranked

1 citations

Weiqing Chen, Pengzhi Zhang, Tu Tran, Yiwei Xiao, Shengyu Li +15 more

Harnessing the Power of Single-Cell Large Language Models with Parameter Efficient Fine-Tuning using scPEFT

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.21.649754

N/A

0DataRank · unranked

1 citations

Ruixin Fei, Jordan E. Krull, Xinyu Zhang, Mingyue Gao, Li Wei Su +9 more

TrimNN: Characterizing cellular community motifs for studying multicellular topological organization in complex tissues

Research Square(2025)10.21203/rs.3.rs-5584635/v1

N/A

0DataRank · unranked

0 citations

Yang Yu, Shuang Wang, Jinpu Li, Meichen Yu, Kyle McCrocklin +5 more

Harnessing the Power of Single Cell Large Language Models with Parameter Efficient Fine-Tuning using scPEFT

Research Square(2025)10.21203/rs.3.rs-5926885/v1

N/A

0DataRank · unranked

0 citations

Fei He, Ruixin Fei, Jordan E. Krull, Xinyu Zhang, Mingyue Gao +9 more

Deep-learning-enabled multi-omics analyses for prediction of future metastasis in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.16.654579

N/A

0DataRank · unranked

0 citations

Maoteng Duan, Po‐Lan Su, Jianying Li, Jordan E. Krull, Jiacheng Jin +15 more

Characterizing Cellular Heterogeneity and Transcriptomic Features of Senotype Using Deep Graph Representation Learning

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.01.662364

N/A

0DataRank · unranked

0 citations

Hao Cheng, Ahmed Ghobashi, Natalia Vanegas-Avendano, Chen Hu, Jesús Rodríguez +20 more

MNase stratification reveals heterogeneous 5hmC in naive B cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.24.672045

N/A

0DataRank · unranked

0 citations

Heng-Yi Chen, Fang-Yun Lay, Qin Ma, Ben Delatte, Chan‐Wang Jerry Lio +1 more

94 Decoding immune suppression in Merkel cell carcinoma through integrated spatial transcriptomics and multiplex proteomics

Regular and Young Investigator Award Abstracts(2025)10.1136/jitc-2025-sitc2025.0094

N/A

0DataRank · unranked

0 citations

Yoshinobu Koguchi, Rachael Teodorescu, Kyeong Joo Jung, Jungmin Shin, Dongjun Chung +10 more

ZFP148 is a transcriptional checkpoint for effector CD8+ T cell differentiation 3939

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.1681

N/A

0DataRank · unranked

0 citations

Xingyu Chen, No Joon Song, Anjun Ma, Jianying Li, Fengxia Gao +9 more

Integrative Methods and Practical Challenges for Single-Cell Multi-omics

Trends in biotechnology(2020)10.1016/j.tibtech.2020.02.013

N/A

0DataRank · unranked

292 citations

Adam McDermaid, Jennifer Xu, Yuzhou Chang, Qin Ma, Anjun Ma

Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks

Computational and Structural Biotechnology Journal(2020)10.1016/j.csbj.2020.10.022

N/A

0DataRank · unranked

83 citations

Anjun Ma, Qin Ma, Dong Xu, Trupti Joshi, Juexin Wang

Single-Cell Techniques and Deep Learning in Predicting Drug Response

Trends in Pharmacological Sciences(2020)10.1016/j.tips.2020.10.004

N/A

0DataRank · unranked

67 citations

Patrick J. Lawrence, Anjun Ma, Jian Zhu, Dong Xu, Qin Ma +1 more

Application of information theoretical approaches to assess diversity and similarity in single-cell transcriptomics

Computational and Structural Biotechnology Journal(2020)10.1016/j.csbj.2020.05.005

N/A

0DataRank · unranked

13 citations

Maciej Pietrzak, Qin Ma, Michał T. Seweryn

Elucidation of Biological Networks across Complex Diseases Using Single-Cell Omics

Trends in Genetics(2020)10.1016/j.tig.2020.08.004

N/A

0DataRank · unranked

31 citations

Anjun Ma, Ewy A. Mathé, Lang Li, BingQiang Liu, Qin Ma +1 more

Inductive Inference of Gene Regulatory Network Using Supervised and Semi-supervised Graph Neural Networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.27.315382

N/A

0DataRank · unranked

2 citations

Anjun Ma, Qin Ma, Dong Xu, Trupti Joshi, Juexin Wang

IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.04.369108

N/A

0DataRank · unranked

0 citations

Carter Allen, Changlin Wan, Dongjun Chung, Chi Zhang, Zihai Li +2 more

scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses

Nature Communications(2021)10.1038/s41467-021-22197-x

N/A

0DataRank · unranked

464 citations

Anjun Ma, Yuzhou Chang, Jianting Gong, Yuexu Jiang, Ren Qi +5 more

Inhibition of polo-like kinase 1 (PLK1) facilitates reactivation of gamma-herpesviruses and their elimination

PLoS Pathogens(2021)10.1371/journal.ppat.1009764

N/A

0DataRank · unranked

14 citations

Dawei Zhou, Guillaume Fiches, Zhenyu Wu, Xuefeng Liu, Qin Ma +4 more

IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis

Bioinformatics(2021)10.1093/bioinformatics/btab108

N/A

0DataRank · unranked

7 citations

Carter Allen, Changlin Wan, Dongjun Chung, Chi Zhang, Zihai Li +2 more

A graph neural network model to estimate cell-wise metabolic flux using single-cell RNA-seq data

Genome Research(2021)10.1101/gr.271205.120

N/A

0DataRank · unranked

237 citations

Wennan Chang, Pengtao Dang, Xiaoyu Lu, Changlin Wan, Silpa Gampala +8 more

MiREDiBase, a manually curated database of validated and putative editing events in microRNAs

Scientific Data(2021)10.1038/s41597-021-00979-8

N/A

0DataRank · unranked

46 citations

Rosario Distefano, Luisa Tomasello, Alessandro Laganà, Francesco Russo, Federica Calore +9 more

Spatially resolved transcriptomics reveals unique gene signatures associated with human temporal cortical architecture and Alzheimer’s pathology

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.07.451554

N/A

0DataRank · unranked

16 citations

Yuzhou Chang, Liangping Li, Diana Acosta, Cody Morrison, Cankun Wang +7 more

Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.08.451210

N/A

0DataRank · unranked

12 citations

Fei He, Juexin Wang, Shuo Chen, Jingyi Li, Jixin Liu +14 more

FACT subunit SUPT16H associates with BRD4 and contributes to silencing of antiviral interferon signaling

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.21.440833

N/A

0DataRank · unranked

5 citations

Jun‐Gyu Park, Zhenyu Wu, Huachao Huang, Guillaume Fiches, Ayan Biswas +6 more

Deep Transfer Learning of Drug Responses by Integrating Bulk and Single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.01.454654

N/A

0DataRank · unranked

4 citations

Zhenyu Wu, Ren Qi, Anjun Ma, Jing Zhao, Dong Xu +3 more

Qin Ma

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