Peter K. Sorger

Also affiliated with Center for Systems Biology

Computer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

15.2Author DataRank

Indexed papers

11in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Papers

Driven by 124 papers — median percentile 61. Top paper: “The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution”.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Targeting TBK1 to overcome resistance to cancer immunotherapy

Nature(2023)10.1038/s41586-023-05704-6

N/A

4.0DataRank · unranked

171 citations

Or‐Yam Revach, Seth Anderson, Emily Kessler, Clara Wolfe, Anne Jenney +54 more

The Dark Kinase Knowledgebase: an online compendium of knowledge and experimental results of understudied kinases

Nucleic Acids Research(2020)10.1093/nar/gkaa853

Top 6%

4.0DataRank

Top 6%159 citations

Nienke Moret, Changchang Liu, Dennis Goldfarb, Peter K. Sorger, Shawn M. Gomez +1 more

Evolution of delayed resistance to immunotherapy in a melanoma responder

Nature Medicine(2021)10.1038/s41591-021-01331-8

N/A

3.6DataRank · unranked

137 citations

Jia‐Ren Lin, Emily Robitschek, Gyulnara G. Kasumova, Alex Heyde, Alvin Shi +35 more

Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma

Nature Medicine(2021)10.1038/s41591-020-01212-6

N/A

3.5DataRank · unranked

127 citations

Cyril Neftel, Marni E. Shore, Hannah R. Weisman, Nathan D. Mathewson, Matthew J. McBride +50 more

A human breast atlas integrating single-cell proteomics and transcriptomics

Developmental Cell(2022)10.1016/j.devcel.2022.05.003

Top 7%

3.2DataRank

Top 7%163 citations

Carman Man-Chung Li, Jennifer M. Rosenbluth, Laura M. Selfors, Nomeda Girnius, Ron C.J. Schackmann +15 more

Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium

Communications Biology(2022)10.1038/s42003-022-03050-3

N/A

2.2DataRank · unranked

83 citations

Denis Schapiro, Konstantin Carlberg, Britta Lötstedt, Ludvig Larsson, Franziska Hildebrandt +9 more

Cancer patient survival can be parametrized to improve trial precision and reveal time-dependent therapeutic effects

Nature Communications(2022)10.1038/s41467-022-28410-9

Top 16%

1.3DataRank

Top 16%39 citations

Geoffrey Fell, Brian M. Alexander, Adam C. Palmer, Peter K. Sorger, Deborah Plana

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

Science(2016)10.1126/science.aad0501

N/A

1.3DataRank · unranked

5121 citations

Benjamin Izar, Sanjay M. Prakadan, Marc H. Wadsworth, Daniel Treacy, John J. Trombetta +39 more

SARS-CoV-2 infection protects against rechallenge in rhesus macaques

Science(2020)10.1126/science.abc4776

N/A

1.0DataRank · unranked

924 citations

Jinyan Liu, Amanda J. Martinot, Katherine McMahan, Noe B. Mercado, Lauren Peter +48 more

Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity

Cell(2020)10.1016/j.cell.2020.11.009

N/A

0.999DataRank · unranked

778 citations

Jefte M. Drijvers, Gregory J. Baker, Alessia Catozzi, Juan Carlos García‐Cañaveras, Brandon M. Gassaway +17 more

Phase II Study of Eribulin plus Pembrolizumab in Metastatic Soft-tissue Sarcomas: Clinical Outcomes and Biological Correlates

Clinical Cancer Research(2024)10.1158/1078-0432.ccr-23-2250

N/A

0.979DataRank · unranked

35 citations

Michael J. Nathenson, Emanuele Mazzola, Jia‐Ren Lin, Joanna Bagińska, Allison Nau +11 more

A single-cell landscape of high-grade serous ovarian cancer

Nature Medicine(2020)10.1038/s41591-020-0926-0

N/A

0.938DataRank · unranked

518 citations

Itay Tirosh, Elizabeth H. Stover, Isaac Wakiro, Michael S. Cuoco, Idan Alter +30 more

Skin immune-mesenchymal interplay within tertiary lymphoid structures promotes autoimmune pathogenesis in hidradenitis suppurativa

Immunity(2024)10.1016/j.immuni.2024.11.010

N/A

0.921DataRank · unranked

44 citations

Joy N.P. Barrett, Jie Tong, Meng‐Ju Lin, Meaghan Marohn, Joseph C. Devlin +21 more

Concurrent Dexamethasone Limits the Clinical Benefit of Immune Checkpoint Blockade in Glioblastoma

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-2291

N/A

0.776DataRank · unranked

176 citations

Prafulla C. Gokhale, Maria C. Speranza, Benjamin K. Eschle, Michael J. Poitras, Margaret K. Wilkens +18 more

Ovarian cancer-derived IL-4 promotes immunotherapy resistance

Cell(2024)10.1016/j.cell.2024.10.006

N/A

0.694DataRank · unranked

101 citations

Alexander Tepper, Chiara Falcomatà, Hunter Potak, Luisanna Pia, Angelo Amabile +14 more

Single cell spatial analysis reveals the topology of immunomodulatory purinergic signaling in glioblastoma

Nature Communications(2022)10.1038/s41467-022-32430-w

N/A

0.675DataRank · unranked

89 citations

Shu Wang, Sylwia A. Stopka, Jia‐Ren Lin, Clarence Yapp, Cecily C. Ritch +18 more

Cell state dependent effects of Bmal1 on melanoma immunity and tumorigenicity

Nature Communications(2024)10.1038/s41467-024-44778-2

N/A

0.672DataRank · unranked

21 citations

Shishir M. Pant, Cecily C. Ritch, Hsin‐Yao Tang, Hongguang Shao, Harsh Dweep +14 more

Systematic characterization of antibody–drug conjugate targets in central nervous system tumors

Neuro-Oncology(2023)10.1093/neuonc/noad205

N/A

0.571DataRank · unranked

44 citations

Jong Suk Lee, Sabrina Chan, Terri Woo, Jacquelyn Jones, Sanda Alexandrescu +5 more

TBK1 Targeting Is Identified as a Therapeutic Strategy to Enhance CAR T-Cell Efficacy Using Patient-Derived Organotypic Tumor Spheroids

Cancer Immunology Research(2025)10.1158/2326-6066.cir-23-1011

N/A

0.530DataRank · unranked

15 citations

Luke Maggs, Apekshya Panda, Samuel J. Wright, Angelina M. Cicerchia, Anne Jenney +23 more

Proteomic profiling across breast cancer cell lines and models

Scientific Data(2023)10.1038/s41597-023-02355-0

Top 38%

0.510DataRank

Top 38%11 citations

Matthew J. Berberich, Robert A. Everley, Maulik K. Nariya, Mirra Chung, Benjamin L. Gaudio +8 more

Online narrative guides for illuminating tissue atlas data and digital pathology images

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.27.001834

Top 39%

0.497DataRank

Top 39%10 citations

Yu‐An Chen, John Hoffer, Jeremy L. Muhlich, Jia‐Ren Lin, Robert Krueger +5 more

Loss of Pip4k2c confers liver-metastatic organotropism through insulin-dependent PI3K-AKT pathway activation

Nature Cancer(2024)10.1038/s43018-023-00704-x

N/A

0.464DataRank · unranked

21 citations

Tyler J. Aprati, Wei-Yu Chi, Johannes C. Melms, Clemens Hug, Stephanie H. Davis +40 more

Single Cell Spatial Analysis Reveals the Topology of Immunomodulatory Purinergic Signaling in Glioblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.12.475925

N/A

0.292DataRank · unranked

6 citations

Shu Wang, Sylwia A. Stopka, Jia‐Ren Lin, Rumana Rashid, Clarence Yapp +12 more

Three-dimensional spatial transcriptomics uncovers cell type dynamics in the rheumatoid arthritis synovium

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.10.420463

N/A

0.269DataRank · unranked

5 citations

Denis Schapiro, Konstantin Carlberg, Britta Lötstedt, Ludvig Larsson, Marina Korotkova +8 more

Temporal and spatial topography of cell proliferation in cancer

Research Square(2021)10.21203/rs.3.rs-584748/v1

N/A

0.241DataRank · unranked

4 citations

Sheheryar Kabraji, Danae Argyropoulou, Yang Dai, Shu Wang, Johann S. Bergholz +10 more

Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.100947

Top 78%

0.104DataRank

Top 78%1 citations

Behrouz Shamsaei, Stephan C. Schürer, Phillip Kogan, Szymon Chojnacki, Michal Kouril +69 more

Craters on the melanoma surface facilitate tumor-immune interactions and demonstrate pathologic response to checkpoint blockade in humans

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.18.613595

N/A

0.104DataRank · unranked

1 citations

Georgia L. Stirtz, Asaf Tal, Ajit J. Nirmal, N. Besson, Stephanie M. Jones +34 more

3D Printed frames to enable reuse and improve the fit of N95 and KN95 respirators

BMC Biomedical Engineering(2021)10.1186/s42490-021-00055-7

N/A

0DataRank · unranked

25 citations

Ai‐Tram N. Bui, Christopher L. Hansen, Deborah Plana, Jordan T. Said, Zizi Yu +17 more

Scope2Screen: Focus+Context Techniques for Pathology Tumor Assessment in Multivariate Image Data

IEEE Transactions on Visualization and Computer Graphics(2021)10.1109/tvcg.2021.3114786

N/A

0DataRank · unranked

21 citations

Robert Krueger, Simon Warchol, John Hoffer, Jeremy Muhlich, Cecily C. Ritch +8 more

De Novo Powered Air-Purifying Respirator Design and Fabrication for Pandemic Response

Frontiers in Bioengineering and Biotechnology(2021)10.3389/fbioe.2021.690905

N/A

0DataRank · unranked

7 citations

Lyla Atta, Deborah Plana, Ferrous Ward, Christopher Davis, Avilash Cramer +15 more

MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435473

N/A

0DataRank · unranked

43 citations

Artem Sokolov, Clarence Yapp, Jeremy L. Muhlich, Joshua M. Hess, Jia‐Ren Lin +16 more

Multiplexed 3D atlas of state transitions and immune interactions in colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.31.437984

N/A

0DataRank · unranked

29 citations

Shu Wang, Shannon Coy, Yu‐An Chen, Clarence Yapp, Madison Tyler +6 more

The spatial landscape of progression and immunoediting in primary melanoma at single cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.23.445310

N/A

0DataRank · unranked

21 citations

Zoltan Maliga, Tuulia Vallius, Brian Quattrochi, Alyce A. Chen, Connor A. Jacobson +9 more

Micro-region transcriptomics of fixed human tissue using Pick-Seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.18.431004

N/A

0DataRank · unranked

15 citations

Ajit J. Nirmal, Nolan G. Ericson, Sarah A. Boswell, Lance U’Ren, Rebecca Podyminogin +10 more

Temporal and spatial topography of cell proliferation in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.16.443704

N/A

0DataRank · unranked

13 citations

Sheheryar Kabraji, Danae Argyropoulou, Yang Dai, Shu Wang, Johann S. Bergholz +10 more

UnMICST: Deep learning with real augmentation for robust segmentation of highly multiplexed images of human tissues

Research Square(2021)10.21203/rs.3.rs-501324/v1

N/A

0DataRank · unranked

11 citations

Edward Novikov, Won-Dong Jang, Yu-An Chen, Marcelo Cicconet, Zoltan Maliga +6 more

UnMICST: Deep learning with real augmentation for robust segmentation of highly multiplexed images of human tissues

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.02.438285

N/A

0DataRank · unranked

9 citations

Edward Novikov, Won-Dong Jang, Tuulia Vallius, Yu‐An Chen, Marcelo Cicconet +7 more

Multiplexed and reproducible high content screening of live and fixed cells using the Dye Drop method

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.27.457854

N/A

0DataRank · unranked

5 citations

Kartik Subramanian, Marc Hafner, Mario Niepel, Luca Gerosa, Mirra Chung +7 more

Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.06.455458

N/A

0DataRank · unranked

2 citations

Caitlin E. Mills, Sarah A. Boswell, Xiaoxi Liu, Charles Tapley Hoyt, Benjamin M. Gyori +3 more

Cancer patient survival can be accurately parameterized, revealing time-dependent therapeutic effects and doubling the precision of small trials

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.14.442837

Top 100%

0DataRank

Top 100%0 citations

Geoffrey Fell, Brian M. Alexander, Adam C. Palmer, Peter K. Sorger, Deborah Plana

Temporal and spatial topography of cell proliferation in cancer.

Journal of Clinical Oncology(2021)10.1200/jco.2021.39.15_suppl.3122

N/A

0DataRank · unranked

0 citations

Giorgio Gaglia, Danae Argyropoulou, Yang Dai, Shu Wang, Johann S. Bergholz +10 more

Independent Drug Action in Combination Therapy: Implications for Precision Oncology

Cancer Discovery(2022)10.1158/2159-8290.cd-21-0212

N/A

0DataRank · unranked

307 citations

Adam C. Palmer, Peter K. Sorger, Deborah Plana

The Spatial Landscape of Progression and Immunoediting in Primary Melanoma at Single-Cell Resolution

Cancer Discovery(2022)10.1158/2159-8290.cd-21-1357

N/A

0DataRank · unranked

220 citations

Zoltan Maliga, Tuulia Vallius, Brian Quattrochi, Alyce A. Chen, Connor A. Jacobson +9 more

Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR

Bioinformatics(2022)10.1093/bioinformatics/btac544

N/A

0DataRank · unranked

135 citations

Yu‐An Chen, Clarence Yapp, Douglas Russell, Sandro Santagata, Peter K. Sorger +1 more

Single-cell tumor-immune microenvironment of BRCA1/2 mutated high-grade serous ovarian cancer

Nature Communications(2022)10.1038/s41467-022-28389-3

N/A

0DataRank · unranked

122 citations

Nuppu Lyytikäinen, Julia Casado, Ella Anttila, Angéla Szabó, U.-M. Haltia +12 more

UnMICST: Deep learning with real augmentation for robust segmentation of highly multiplexed images of human tissues

Communications Biology(2022)10.1038/s42003-022-04076-3

N/A

0DataRank · unranked

52 citations

Edward Novikov, Won-Dong Jang, Tuulia Vallius, Yuan Chen, Marcelo Cicconet +7 more

Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes

eLife(2022)10.7554/elife.72879

N/A

0DataRank · unranked

50 citations

Caitlin E. Mills, Sarah A. Boswell, Xiaoxi Liu, Charles Tapley Hoyt, Benjamin M. Gyori +3 more

Prediction of early-stage melanoma recurrence using clinical and histopathologic features

npj Precision Oncology(2022)10.1038/s41698-022-00321-4

N/A

0DataRank · unranked

49 citations

Nga Nguyen, Feng Liu, Mia S. DeSimone, Bonnie W. Leung, Ahmad Rajeh +23 more

Multiplexed and reproducible high content screening of live and fixed cells using Dye Drop

Nature Communications(2022)10.1038/s41467-022-34536-7

N/A

0DataRank · unranked

31 citations

Kartik Subramanian, Marc Hafner, Mario Niepel, Luca Gerosa, Mirra Chung +7 more

Visinity: Visual Spatial Neighborhood Analysis for Multiplexed Tissue Imaging Data

IEEE Transactions on Visualization and Computer Graphics(2022)10.1109/tvcg.2022.3209378

N/A

0DataRank · unranked

22 citations

Robert Krueger, Ajit J. Nirmal, Giorgio Gaglia, J. M. Jessup, Cecily C. Ritch +8 more

The impact of stage-related features in melanoma recurrence prediction: A machine learning approach

JAAD International(2022)10.1016/j.jdin.2022.08.014

N/A

0DataRank · unranked

3 citations

Bonnie W. Leung, Nga Nguyen, Mia S. DeSimone, Feng Liu, Min Seok Choi +13 more

Galaxy-ME: A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504436

N/A

0DataRank · unranked

8 citations

Cameron Watson, Qiang Gu, Daniel Persson, Luke Sargent, Yu‐An Chen +13 more

Lymphocyte networks are dynamic cellular communities in the immunoregulatory landscape of lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.11.503237

N/A

0DataRank · unranked

7 citations

Megan L. Burger, Cecily C. Ritch, Danae Rammos, Yang Dai, Grace Crossland +13 more

Multi range ERK responses shape the proliferative trajectory of single cells following oncogene induced senescence

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.06.511142

N/A

0DataRank · unranked

1 citations

Clemens Hug, José Reyes, Chengzhe Tian, Luca Gerosa, Fabian Fröhlich +7 more

Biphasic JNK–Erk Signaling Separates Induction and Maintenance of Cell Senescence after DNA Damage

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.15.496288

N/A

0DataRank · unranked

0 citations

Gerard J. Ostheimer, Andrea R. Tentner, Peter K. Sorger, Kevin A. Janes, Douglas A. Lauffenburger +2 more

Paired evaluation defines performance landscapes for machine learning models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.07.507020

N/A

0DataRank · unranked

0 citations

Caitlin E. Mills, Peter K. Sorger, Artem Sokolov, Maulik K. Nariya

Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer

Cell(2023)10.1016/j.cell.2022.12.028

N/A

0DataRank · unranked

288 citations

Shu Wang, Shannon Coy, Yu‐An Chen, Clarence Yapp, Madison Tyler +6 more

Biphasic JNK-Erk signaling separates the induction and maintenance of cell senescence after DNA damage induced by topoisomerase II inhibition

Cell Systems(2023)10.1016/j.cels.2023.06.005

N/A

0DataRank · unranked

30 citations

Gerard J. Ostheimer, Andrea R. Tentner, Brian A. Joughin, Alexandra M. Dakoyannis, Charvi D. Sharma +5 more

Multi-range ERK responses shape the proliferative trajectory of single cells following oncogene induction

Cell Reports(2023)10.1016/j.celrep.2023.112252

N/A

0DataRank · unranked

28 citations

Clemens Hug, José Reyes, Chengzhe Tian, Luca Gerosa, Fabian Fröhlich +7 more

A Hybrid Structure-Based Machine Learning Approach for Predicting Kinase Inhibition by Small Molecules

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00347

N/A

0DataRank · unranked

19 citations

Peter S. Kutchukian, Nhan Duc Nguyen, Mohammed AlQuraishi, Peter K. Sorger, Changchang Liu

Metabolic modulation of mitochondrial mass during CD4+ T cell activation

Cell chemical biology(2023)10.1016/j.chembiol.2023.08.008

N/A

0DataRank · unranked

10 citations

Dan Liang, Robert van de Ven, Peter Georgiev, Brandon M. Gassaway, SeongJun Han +15 more

Development and validation of time-to-event models to predict metastatic recurrence of localized cutaneous melanoma

Journal of the American Academy of Dermatology(2023)10.1016/j.jaad.2023.08.105

N/A

0DataRank · unranked

9 citations

Bonnie W. Leung, Mia S. DeSimone, Nga Nguyen, Ahmad Rajeh, Michael R. Collier +20 more

Paired evaluation of machine-learning models characterizes effects of confounders and outliers

Patterns(2023)10.1016/j.patter.2023.100791

N/A

0DataRank · unranked

6 citations

Caitlin E. Mills, Peter K. Sorger, Artem Sokolov, Maulik K. Nariya

Nociceptor neuroimmune interactomes reveal cell type- and injury-specific inflammatory pain pathways

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.01.526526

N/A

0DataRank · unranked

8 citations

Benjamin M. Gyori, Sara Hakim, Samuel Bunga, Daniel G. Taub, Mari Carmen Ruiz-Cantero +5 more

A CRISPRi/a screening platform to study cellular nutrient transport in diverse microenvironments

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525375

N/A

0DataRank · unranked

7 citations

Alicia M. Darnell, Benjamin L. Gaudio, Evan C. Lien, Anna M. Barbeau, Matthew G. Vander Heiden +2 more

Quality Control for Single Cell Analysis of High-plex Tissue Profiles using CyLinter

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.565120

N/A

0DataRank · unranked

5 citations

Edward Novikov, Ziyuan Zhao, Tuulia Vallius, Janae Davis, Jia‐Ren Lin +6 more

Longitudinal and multimodal auditing of tumor adaptation to CDK4/6 inhibitors in HR+ metastatic breast cancers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.27.557464

N/A

0DataRank · unranked

1 citations

Julian Egger, Cameron Watson, Shamilene Sivagnanam, Koei Chin, Kevin Hawthorne +18 more

Data from Analysis of Mitosis and Antimitotic Drug Responses in Tumors by In Vivo Microscopy and Single-Cell Pharmacodynamics

(2023)10.1158/0008-5472.c.6502998.v1

N/A

0DataRank · unranked

0 citations

Rainer H. Köhler, Floris Foijer, Peter K. Sorger, Ralph Weissleder, Timothy J. Mitchison +1 more

Data from Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1-Deficient Cells

(2023)10.1158/0008-5472.c.6512719.v1

N/A

0DataRank · unranked

0 citations

Alfredo E. Rodríguez, Jaana Oikkonen, D. Gulhan, Huy Nguyen, J. Domı́nguez +13 more

Data from HAND1 and BARX1 Act as Transcriptional and Anatomic Determinants of Malignancy in Gastrointestinal Stromal Tumor

(2023)10.1158/1078-0432.c.6530451

N/A

0DataRank · unranked

0 citations

Shannon Coy, Jia‐Ren Lin, Jessica L. Andersen, Joanna Przybył, Emanuele Mazzola +7 more

Data from HAND1 and BARX1 Act as Transcriptional and Anatomic Determinants of Malignancy in Gastrointestinal Stromal Tumor

(2023)10.1158/1078-0432.c.6530451.v1

N/A

0DataRank · unranked

0 citations

Shannon Coy, Jia‐Ren Lin, Jessica L. Andersen, Joanna Przybył, Emanuele Mazzola +7 more

Data from Clinical Efficacy and Molecular Response Correlates of the WEE1 Inhibitor Adavosertib Combined with Cisplatin in Patients with Metastatic Triple-Negative Breast Cancer

(2023)10.1158/1078-0432.c.6530060.v1

Top 100%

0DataRank

Top 100%0 citations

Tianyu Li, Tuulia Vallius, Jennifer L. Guerriero, Nabihah Tayob, Bose Kochupurakkal +17 more

Data from Clinical Efficacy and Molecular Response Correlates of the WEE1 Inhibitor Adavosertib Combined with Cisplatin in Patients with Metastatic Triple-Negative Breast Cancer

(2023)10.1158/1078-0432.c.6530060

Top 100%

0DataRank

Top 100%0 citations

Tianyu Li, Tuulia Vallius, Jennifer L. Guerriero, Nabihah Tayob, Bose Kochupurakkal +17 more

Data from The Spatial Landscape of Progression and Immunoediting in Primary Melanoma at Single-Cell Resolution

(2023)10.1158/2159-8290.c.6549601

N/A

0DataRank · unranked

0 citations

Zoltan Maliga, Tuulia Vallius, Brian Quattrochi, Alyce A. Chen, Connor A. Jacobson +9 more

Supplementary Table from The Spatial Landscape of Progression and Immunoediting in Primary Melanoma at Single-Cell Resolution

(2023)10.1158/2159-8290.22541281

Top 100%

0DataRank

Top 100%0 citations

Zoltan Maliga, Tuulia Vallius, Brian Quattrochi, Alyce A. Chen, Connor A. Jacobson +9 more

896 Characterizing macrophage heterogeneity in HR+/HER2- metastatic breast cancer reveals novel mechanisms of resistance

Regular and Young Investigator Award Abstracts(2023)10.1136/jitc-2023-sitc2023.0896

N/A

0DataRank · unranked

0 citations

Kenichi Shimada, Madeline G Townsend, Tianyu Li, Nabihah Tayob, Molly DiLullo +9 more

1485 Characterization of the hormone receptor-positive breast tumor microenvironment using single cell transcriptomics and multi-plex immunofluorescence

Regular and Young Investigator Award Abstracts(2023)10.1136/jitc-2023-sitc2023.1485

N/A

0DataRank · unranked

0 citations

Kenichi Shimada, Kelly F Zheng, Cheryl Gu, Yvonne X Cui, Jonathan M. Goldberg +6 more

Organoid culture promotes dedifferentiation of mouse myoblasts into stem cells capable of complete muscle regeneration

Nature Biotechnology(2024)10.1038/s41587-024-02344-7

N/A

0DataRank · unranked

24 citations

Mark N. Matyas, Andrew R. Gehrke, William Chen, Erica Wolin, Kristina M. Holton +15 more

Illuminating function of the understudied druggable kinome

Drug Discovery Today(2024)10.1016/j.drudis.2024.103881

N/A

0DataRank · unranked

17 citations

Alison D. Axtman, Timothy M. Willson, Michael B. Major, Reid Townsend, Peter K. Sorger +2 more

Qualification of a multiplexed tissue imaging assay and detection of novel patterns of HER2 heterogeneity in breast cancer

npj Breast Cancer(2024)10.1038/s41523-023-00605-3

N/A

0DataRank · unranked

10 citations

Jia‐Ren Lin, Ricardo Pastorello, Ziming Du, Yu-An Chen, Madeline G Townsend +17 more

Cell2Cell: Explorative Cell Interaction Analysis in Multi-Volumetric Tissue Data

IEEE Transactions on Visualization and Computer Graphics(2024)10.1109/tvcg.2024.3456406

N/A

0DataRank · unranked

4 citations

Kevin Sidak, Zoltan Maliga, Torsten Möller, Nils Gehlenborg, Peter K. Sorger +4 more

SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data

Briefings in Bioinformatics(2024)10.1093/bib/bbae189

N/A

0DataRank · unranked

6 citations

Zoltan Maliga, Boshen Yan, Tuulia Vallius, Yingxiao Shi, Sara Khattab +9 more

psudo: Exploring Multi‐Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring

Computer Graphics Forum(2024)10.1111/cgf.15103

N/A

0DataRank · unranked

2 citations

Jakob Troidl, Jeremy L. Muhlich, Robert Krueger, J. A. Hoffer, Tica Lin +5 more

psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.11.589087

N/A

0DataRank · unranked

0 citations

Jakob Troidl, Jeremy L. Muhlich, Robert Krueger, John Hoffer, Tica Lin +5 more

PRAME expression in melanoma is negatively regulated by TET2-mediated DNA hydroxymethylation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.26.605293

N/A

0DataRank · unranked

0 citations

Tuulia Vallius, Arianna Zhang, Devon Van Cura, Francisco Alicandri, Grant M. Fischer +8 more

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eLife(2024)10.7554/elife.101974

N/A

0DataRank · unranked

0 citations

Mohita Tagore, Miranda V. Hunter, Ting Huang, Emily Montal, Joshua M. Weiss +4 more

3D Tissue Cyclic Immunofluorescence (3D CyCIF) v1

(2024)10.17504/protocols.io.261ge59m7g47/v1

N/A

0DataRank · unranked

0 citations

Ajit J. Nirmal, Felix Y. Zhou, Zoltan Maliga, Juliann B. Tefft, Paula Montero Llopis +6 more

CRATER tumor niches facilitate CD8+ T cell engagement and correspond with immunotherapy success

Cell(2025)10.1016/j.cell.2025.09.021

N/A

0DataRank · unranked

11 citations

Georgia L. Stirtz, Asaf Tal, Ajit J. Nirmal, Kathleen L. Pfaff, Michael P. Manos +39 more

Integrated analysis of transcriptional and metabolic responses to mitochondrial stress

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101027

N/A

0DataRank · unranked

5 citations

Songhua Hu, Sarah A. Boswell, Peter K. Sorger, Alison E. Ringel, Marcia C. Haigis +1 more

PRAME Expression in Melanoma is Negatively Regulated by TET2-Mediated DNA Hydroxymethylation

Laboratory Investigation(2025)10.1016/j.labinv.2025.104123

N/A

0DataRank · unranked

3 citations

Tuulia Vallius, Arianna Zhang, Devon Van Cura, Francisco Alicandri, Grant M. Fischer +10 more

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PubMed(2025)10.48550/arxiv.2503.09091

N/A

0DataRank · unranked

3 citations

Guihong Wan, Xintao Wu, Xinyu Wu, Xiaohui Chen, Yi He +5 more

Antigen reactivity defines tissue-resident memory and exhausted T cells in tumours

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.23.666465

N/A

0DataRank · unranked

2 citations

Jan Schröder, Luke C. Gandolfo, Maleika Osman, Elanor N. Wainwright, Enid Y.N. Lam +38 more

Whole-slide multiplexed tissue imaging of prostate adenocarcinoma to investigate immune niches in high- versus low-grade tumors.

Journal of Clinical Oncology(2025)10.1200/jco.2025.43.5_suppl.224

N/A

0DataRank · unranked

0 citations

Jeremiah A. Wala, Brian Labadie, Aishwarya Atmakuri, Kiranj Chaudagar, Eamon Toye +6 more

Corrigendum to “Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data”

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.100995

N/A

0DataRank · unranked

0 citations

Behrouz Shamsaei, Stephan C. Schürer, Phillip Kogan, Szymon Chojnacki, Michal Kouril +68 more

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arXiv (Cornell University)(2025)10.48550/arxiv.2511.04262

N/A

0DataRank · unranked

0 citations

Morgan L. Turner, Cydney Nielsen, Xianhao Carton Liu, Mark S. Keller, Lisa Choy +12 more

SEAL: Spatially-resolved Embedding Analysis with Linked Imaging Data

IEEE Transactions on Visualization and Computer Graphics(2025)10.1109/tvcg.2025.3634794

N/A

0DataRank · unranked

0 citations

Grace Guo, Johannes Knittel, Dan Freeman, Usha Bhalla, Jeremy L. Muhlich +3 more

Melanoma to rhabdomyosarcoma plasticity in the setting of immunotherapy

(2025)10.1101/2025.10.31.25338685

N/A

0DataRank · unranked

0 citations

Dennie T. Frederick, Alvin Shi, Ana B. Larque, Benchun Miao, Tatyana Sharova +16 more

Implementation of single-cell genomics as a translational tool in patients with metastatic melanoma.

Journal of Clinical Oncology(2016)10.1200/jco.2016.34.15_suppl.11503

N/A

0DataRank · unranked

0 citations

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Cell(2020)10.1016/j.cell.2020.10.005

N/A

0DataRank · unranked

226 citations

Kathleen Busman‐Sahay, Samuel J. Vidal, Zoltan Maliga, Stephen Bondoc, Carly E. Starke +22 more

Selective USP7 inhibition elicits cancer cell killing through a p53-dependent mechanism

Scientific Reports(2020)10.1038/s41598-020-62076-x

N/A

0DataRank · unranked

124 citations

Xiaoxi Liu, Robert S. Magin, Laura M. Doherty, Wai Cheung Chan, Scott B. Ficarro +22 more

Development of CDK2 and CDK5 Dual Degrader TMX‐2172

Angewandte Chemie International Edition(2020)10.1002/anie.202004087

N/A

0DataRank · unranked

78 citations

Jie Jiang, Zhixiang He, Nicholas Kwiatkowski, Katherine A. Donovan, Caitlin E. Mills +7 more

Regulatory and Safety Considerations in Deploying a Locally Fabricated, Reusable Face Shield in a Hospital Responding to the COVID-19 Pandemic

Med(2020)10.1016/j.medj.2020.06.003

N/A

0DataRank · unranked

45 citations

Marc‐Joseph Antonini, Deborah Plana, Philip D. Anderson, Brandon Beller, Edward W. Boyer +11 more

Clinical Efficacy and Molecular Response Correlates of the WEE1 Inhibitor Adavosertib Combined with Cisplatin in Patients with Metastatic Triple-Negative Breast Cancer

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-3089

N/A

0DataRank · unranked

51 citations

Tianyu Li, Tuulia Vallius, Jennifer L. Guerriero, Nabihah Tayob, Bose Kochupurakkal +17 more

Chemical Biology Toolkit for DCLK1 Reveals Connection to RNA Processing

Cell chemical biology(2020)10.1016/j.chembiol.2020.07.011

N/A

0DataRank · unranked

22 citations

Fleur M. Ferguson, Lianbo Li, Miljan Kuljanin, Caitlin E. Mills, Kartik Subramanian +8 more

Comparing the Efficacy of Cancer Therapies between Subgroups in Basket Trials

Cell Systems(2020)10.1016/j.cels.2020.09.003

N/A

0DataRank · unranked

7 citations

Deborah Plana, Peter K. Sorger, Adam C. Palmer

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The Journal of Open Source Software(2020)10.21105/joss.02579

N/A

0DataRank · unranked

39 citations

Rumana Rashid, Jeremy L. Muhlich, Yu‐An Chen, Douglas Russell, Juha Ruokonen +5 more

Receptor-based mechanism of relative sensing and cell memory in mammalian signaling networks

eLife(2020)10.7554/elife.50342

N/A

0DataRank · unranked

36 citations

Mario Niepel, Purushottam D. Dixit, Sang Kyun Lim, Peter K. Sorger, Dennis Vitkup +1 more

Response and Mechanisms of Resistance to Larotrectinib and Selitrectinib in Metastatic Undifferentiated Sarcoma Harboring Oncogenic Fusion of NTRK1

JCO Precision Oncology(2020)10.1200/po.19.00287

N/A

0DataRank · unranked

36 citations

Michael J. Nathenson, Jia‐Ren Lin, Shaolin Mei, Ziming Du, Karan Malik +8 more

Development of CDK2 and CDK5 Dual Degrader TMX‐2172

Angewandte Chemie(2020)10.1002/ange.202004087

N/A

0DataRank · unranked

5 citations

Jie Jiang, Zhixiang He, Nicholas Kwiatkowski, Katherine A. Donovan, Caitlin E. Mills +7 more

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.10.942748

N/A

0DataRank · unranked

30 citations

Ioan Filip, Ratul Chowdhury, Costas D. Maranas, Peter K. Sorger, Mohammed AlQuraishi +2 more

A resource for exploring the understudied human kinome for research and therapeutic opportunities

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.02.022277

N/A

0DataRank · unranked

26 citations

Changchang Liu, Benjamin M. Gyori, John A. Bachman, Albert Steppi, Clemens Hug +7 more

Assessing the quality of nontraditional N95 filtering face-piece respirators available during the COVID-19 pandemic

medRxiv(2020)10.1101/2020.07.25.20161968

N/A

0DataRank · unranked

18 citations

Enze Tian, Avilash Cramer, Helen Yang, Mary M. Carmack, Michael S. Sinha +10 more

3D Printed frames to enable reuse and improve the fit of N95 and KN95 respirators

medRxiv(2020)10.1101/2020.07.20.20151019

N/A

0DataRank · unranked

12 citations

Ai‐Tram N. Bui, Christopher L. Hansen, Deborah Plana, Jordan T. Said, Zizi Yu +16 more

A Crisis-Responsive Framework for Medical Device Development during the COVID-19 Pandemic

Preprints.org(2020)10.20944/preprints202009.0577.v1

N/A

0DataRank · unranked

3 citations

Deborah Plana, Shriya S. Srinivasan, Lyla Atta, Aditya Achanta, Helen Yang +8 more

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

Nature Methods(2021)10.1038/s41592-021-01308-y

N/A

0DataRank · unranked

245 citations

Artem Sokolov, Clarence Yapp, Yu‐An Chen, Jeremy L. Muhlich, Joshua M. Hess +22 more

Myeloid antigen-presenting cell niches sustain antitumor T cells and license PD-1 blockade via CD28 costimulation

Cancer Cell(2021)10.1016/j.ccell.2021.10.008

N/A

0DataRank · unranked

197 citations

Riccardo Turrini, Aspram Minasyan, David Barras, Isaac Crespo, Alizée J Grimm +31 more

GeneWalk identifies relevant gene functions for a biological context using network representation learning

Genome biology(2021)10.1186/s13059-021-02264-8

N/A

0DataRank · unranked

60 citations

Benjamin M. Gyori, John A. Bachman, Peter K. Sorger, L. Stirling Churchman, Robert Ietswaart

Genome-encoded cytoplasmic double-stranded RNAs, found in C9ORF72 ALS-FTD brain, propagate neuronal loss

Science Translational Medicine(2021)10.1126/scitranslmed.aaz4699

N/A

0DataRank · unranked

57 citations

Aslı Şahin, Benjamin R. Schrank, Hawra Al Lawati, Isabel Costantino, Eric Benz +13 more

Time-resolved phosphoproteomics reveals scaffolding and catalysis-responsive patterns of SHP2-dependent signaling

eLife(2021)10.7554/elife.64251

N/A

0DataRank · unranked

40 citations

Lily A. Chylek, Alison R. Erickson, Anamarija Pfeiffer, Khal-Hentz Gabriel, Jonathan R. LaRochelle +10 more

Analysis of SteraMist ionized hydrogen peroxide technology in the sterilization of N95 respirators and other PPE

Scientific Reports(2021)10.1038/s41598-021-81365-7

N/A

0DataRank · unranked

43 citations

Deborah Plana, Helen Yang, Mary M. Carmack, Enze Tian, Michael S. Sinha +11 more

Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1 -Deficient Cells

Cancer Research(2021)10.1158/0008-5472.can-20-2912

N/A

0DataRank · unranked

38 citations

Alfredo Rodríguez, Jaana Oikkonen, D. Gulhan, Huy Nguyen, Julieta Domínguez +13 more

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2

Genome Medicine(2021)10.1186/s13073-021-00943-6

N/A

0DataRank · unranked

36 citations

Ioan Filip, Ratul Chowdhury, Costas D. Maranas, Peter K. Sorger, Mohammed AlQuraishi +2 more

HAND1 and BARX1 Act as Transcriptional and Anatomic Determinants of Malignancy in Gastrointestinal Stromal Tumor

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-20-3538

N/A

0DataRank · unranked

30 citations

Shannon Coy, Jia‐Ren Lin, Jessica L. Andersen, Joanna Przybył, Emanuele Mazzola +7 more

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