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Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium

Communications Biology(2022)10.1038/s42003-022-03050-3Source: DataRank Database

Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium is a research paper published in Communications Biology (2022). On theSindex it has a DataRank of 2.2. It has been cited 83 times, with 76 citing works in its 1-hop citation network.

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2.2DataRank · unranked

Scored on demand from live citation data

Open Access83 citations · 76 citing works in its network

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Linked data & code

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (6 grants)Impact (FWCI 11.25)OA: goldTopics (33)Linked Datasets (6)DataCite Reuse (6)IDs (PubMed, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 30%Citation Network 70%

Base Score Contribution

0.665

From this paper's citation signal

Citation Network Contribution

1.5

From 63 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 76 citers.

Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics
Cell Reports Methods202315 citations22 referencesContributes 0.126
A Single-Cell RNA-Sequencing Analysis of Distinct Subsets of Synovial Macrophages in Rheumatoid Arthritis
DNA and Cell Biology202324 citations27 referencesContributes 0.119
Cellstitch: 3D cellular anisotropic image segmentation via optimal transport
BMC Bioinformatics202315 citations36 referencesContributes 0.077
Computer Vision Analysis of Rheumatoid Arthritis Synovium Reveals Lymphocytic Inflammation Is Associated With Immunoglobulin Skewing in Blood
Arthritis & Rheumatology202310 citations33 referencesContributes 0.073
Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view
Nature Genetics202445 citations66 referencesContributes 0.058

Authors (14)

Denis Schapiro ORCID,Konstantin Carlberg ORCID,Britta Lötstedt ORCID,Ludvig Larsson ORCID,Franziska Hildebrandt ORCID

Live enrichment

PubMed:35149753 OpenAlex:https://openalex.org/W4211001444

Knut och Alice Wallenbergs Stiftelse

Grant: 2017.0454

Svenska Sällskapet för Medicinsk Forskning

Grant: P19-0052

Royal Swedish Academy of Sciences

Grant: BS2019-0040

National Institutes of Health

Grant: 5U54CA225088-05

Systems Pharmacology of Therapeutic and Adverse Responses to ImmuneCheckpoint and Small Molecule Drugs

Swiss National Science Foundation

Grant: 181475

Using functional “cancer-geography” to build a predictive model for the melanoma precancerous ecosystem

Knut and Alice Wallenberg Foundation

Grant: unidentified

unidentified

FWCI

11.25

Citation Percentile

1.0%

Citation Trend

2021

2022

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://www.nature.com/articles/s42003-022-03050-3.pdf

publisherhttps://www.nature.com/articles/s42003-022-03050-3.pdf

publisherhttps://www.nature.com/articles/s42003-022-03050-3

journalhttps://doi.org/10.1038/s42003-022-03050-3

repositoryhttps://pubmed.ncbi.nlm.nih.gov/35149753

Fields of Study

Systemic Lupus Erythematosus ResearchRheumatoid Arthritis Research and TherapiesInflammatory Bowel Disease0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

Arthritis, RheumatoidHumansSynovial MembraneTranscriptome

Keywords

TranscriptomeRheumatoid arthritisImmunostainingCell typeInflammationIn situ hybridizationArthritisCellPathologyBiologyComputational biologyMedicineImmunologyGene expressionImmunohistochemistryGeneGeneticsArthritis, RheumatoidQH301-705.5Synovial MembraneHumansBiology (General)Article

Sustainable Development Goals

SDG 0: Good health and well-being

Additional file 1 of Cellstitch: 3D cellular anisotropic image segmentation via optimal transport

10.6084/m9.figshare.24844655.v1figshare

Additional file 1 of Cellstitch: 3D cellular anisotropic image segmentation via optimal transport

10.6084/m9.figshare.24844655figshare

Additional file 1 of Targeting an inflammation-amplifying cell population can attenuate osteoarthritis-associated pain

10.6084/m9.figshare.25239397.v1figshare

Additional file 1 of Targeting an inflammation-amplifying cell population can attenuate osteoarthritis-associated pain

10.6084/m9.figshare.25239397figshare

Additional file 2 of Targeting an inflammation-amplifying cell population can attenuate osteoarthritis-associated pain

10.6084/m9.figshare.25239430.v1figshare