Martha L. Bulyk

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 29 papers. Top paper: “Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements”.

Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements

Molecular Systems Biology(2022)10.15252/msb.202110473

N/A

0.965DataRank · unranked

39 citations

Vikram S. Ratnu, Lucia Gordillo, In‐Young Hwang, Luca Mariani, Kathryn Weinand +7 more

MORF and MOZ acetyltransferases target unmethylated CpG islands through the winged helix domain

Nature Communications(2023)10.1038/s41467-023-36368-5

N/A

0.848DataRank · unranked

30 citations

Brianna J. Klein, Akinori Kanai, Suk Min Jang, Khan L. Cox, Bing‐Rui Zhou +14 more

Transcriptional Silencers: Driving Gene Expression with the Brakes On

Trends in Genetics(2021)10.1016/j.tig.2021.02.002

N/A

0DataRank · unranked

118 citations

Stephen S. Gisselbrecht, Martha L. Bulyk, Julian A. Segert

Zinc Finger Protein SALL4 Functions through an AT-Rich Motif to Regulate Gene Expression

Cell Reports(2021)10.1016/j.celrep.2020.108574

N/A

0DataRank · unranked

66 citations

Mahmoud A. Bassal, Hong Kee Tan, Jesse V. Kurland, Kol Jia Yong, John J. Young +12 more

The SAM domain-containing protein 1 (SAMD1) acts as a repressive chromatin regulator at unmethylated CpG islands

Science Advances(2021)10.1126/sciadv.abf2229

N/A

0DataRank · unranked

37 citations

Yuqiao Zhou, Yinghua Cao, Clara Simon, Hans‐Martin Pogoda, Junyi Jiang +11 more

Lineage-specific control of convergent differentiation by a Forkhead repressor

Development(2021)10.1242/dev.199493

N/A

0DataRank · unranked

17 citations

Julia M. Rogers, Jonathan D. Rumley, Shai Shaham, Martha L. Bulyk, John I. Murray +2 more

Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue

Genome biology(2021)10.1186/s13059-021-02574-x

N/A

0DataRank · unranked

5 citations

Stephen S. Gisselbrecht, Yuliya A. Sytnikova, Tiziana M. Cafarelli, David E. Hill, Martha L. Bulyk +1 more

A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells

Genome Research(2021)10.1101/gr.275472.121

N/A

0DataRank · unranked

24 citations

Luca Mariani, Gerson Rothschild, Edwin R. Smith, Bryan J. Venters, Thomas R. Blanda +20 more

Comparative chromatin accessibility upon BDNF-induced neuronal activity delineates neuronal regulatory elements

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.28.446128

N/A

0DataRank · unranked

1 citations

Vikram S. Ratnu, Lucia Gordillo, In‐Young Hwang, Luca Mariani, Kathryn Weinand +6 more

Pioneer factors — key regulators of chromatin and gene expression

Nature Reviews Genetics(2023)10.1038/s41576-023-00648-z

N/A

0DataRank · unranked

55 citations

Jacques Drouin, Melissa M. Harrison, Jussi Taipale, Kenneth S. Zaret, Martha L. Bulyk

A stem cell epigenome is associated with primary nonresponse to CD19 CAR T cells in pediatric acute lymphoblastic leukemia

Blood Advances(2023)10.1182/bloodadvances.2022008977

N/A

0DataRank · unranked

18 citations

Rebecca Gardner, Hsien-Chao Chou, Abdalla Abdelmaksoud, Young C. Song, Luca Mariani +20 more

Blood cell traits’ GWAS loci colocalization with variation in PU.1 genomic occupancy prioritizes causal noncoding regulatory variants

Cell Genomics(2023)10.1016/j.xgen.2023.100327

N/A

0DataRank · unranked

10 citations

Martha L. Bulyk, Raehoon Jeong

Colocalization of blood cell traits GWAS associations and variation in PU.1 genomic occupancy prioritizes causal noncoding regulatory variants

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.29.534582

N/A

0DataRank · unranked

2 citations

Martha L. Bulyk, Raehoon Jeong

DNA binding analysis of rare variants in homeodomains reveals novel homeodomain specificity-determining residues

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545320

N/A

0DataRank · unranked

2 citations

Patrick K. Kimes, Stephen S. Gisselbrecht, Sachi Inukai, Sabrina K. Phanor, James T. Anderson +10 more

DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues

Nature Communications(2024)10.1038/s41467-024-47396-0

N/A

0DataRank · unranked

25 citations

Patrick K. Kimes, Stephen S. Gisselbrecht, Sachi Inukai, Sabrina K. Phanor, James T. Anderson +10 more

Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.12.584681

N/A

0DataRank · unranked

11 citations

Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal +29 more

Chromatin accessibility variation provides insights into missing regulation underlying immune-mediated diseases

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589213

N/A

0DataRank · unranked

4 citations

Martha L. Bulyk, Raehoon Jeong

Chromatin accessibility variation provides insights into missing regulation underlying immune-mediated diseases

eLife(2024)10.7554/elife.98289.1

N/A

0DataRank · unranked

4 citations

Martha L. Bulyk, Raehoon Jeong

Gene identification for ocular congenital cranial motor neuron disorders using human sequencing, zebrafish screening, and protein binding microarrays

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.12.612713

N/A

0DataRank · unranked

2 citations

Paola M. Matos Ruiz, Jessica King, Emma E. Foster, Lindsay Berube, Wai‐Man Chan +23 more

Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms

Molecular Cell(2025)10.1016/j.molcel.2025.03.004

N/A

0DataRank · unranked

35 citations

Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Babita Kaundal +33 more

Beyond the gene: decoding alternative isoforms

Trends in Genetics(2025)10.1016/j.tig.2025.11.003

N/A

0DataRank · unranked

1 citations

Martha L. Bulyk, Kaia Mattioli

Meta-analysis reveals transcription factors and DNA binding domain variants associated with congenital heart defect and orofacial cleft

npj Genomic Medicine(2025)10.1038/s41525-025-00525-0

N/A

0DataRank · unranked

1 citations

Martha L. Bulyk, Raehoon Jeong

Missense variants in human forkhead transcription factors reveal determinants of forkhead DNA bispecificity

Cell Reports(2025)10.1016/j.celrep.2025.116427

N/A

0DataRank · unranked

1 citations

Stephen S. Gisselbrecht, Julie‐Alexia Dias, Raehoon Jeong, Elisabeth Rothman, Martha L. Bulyk +1 more

TF paralogs—Natural experiments in DNA binding

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2025.103171

N/A

0DataRank · unranked

1 citations

Martha L. Bulyk, Shubham Khetan

Histone H4 lysine 20 monomethylation is not a mark of transcriptional silencers

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.09.632211

N/A

0DataRank · unranked

1 citations

Martha L. Bulyk, Karen Adelman, Julian A. Segert

Meta-analysis reveals transcription factors and DNA binding domain variants associated with congenital heart defect and orofacial cleft

medRxiv(2025)10.1101/2025.01.30.25321274

N/A

0DataRank · unranked

0 citations

Martha L. Bulyk, Raehoon Jeong

MEDEA: analysis of transcription factor binding motifs in accessible chromatin

Genome Research(2020)10.1101/gr.260877.120

N/A

0DataRank · unranked

12 citations

Kathryn Weinand, Stephen S. Gisselbrecht, Martha L. Bulyk, Luca Mariani

NKX2-5 congenital heart disease mutations show diverse loss and gain of epigenomic, biochemical and chromatin search functions underpinning pathogenicity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.20.659510

N/A

0DataRank · unranked

0 citations

Nicole Schönrock, Alex McCann, Sabrina K. Phanor, Kian Hong Kock, Jesse V. Kurland +11 more

EP300 Selectively Controls the Enhancer Landscape of MYCN -Amplified Neuroblastoma

Cancer Discovery(2021)10.1158/2159-8290.cd-21-0385

N/A

0DataRank · unranked

165 citations

Tingjian Wang, Virangika K. Wimalasena, Mark W. Zimmerman, Deyao Li, Neekesh V. Dharia +24 more