Adam Siepel

Biochemistry, Genetics and Molecular BiologySocial SciencesPsychology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.174Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Author Correction: Comparative and demographic analysis of orang-utan genomes

Nature(2022)10.1038/s41586-022-04799-7

Top 67%

0.174DataRank

Top 67%2 citations

LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny +95 more

Papers

Driven by 39 papers — median percentile 33. Top paper: “Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats”.

Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats

Genome Biology and Evolution(2023)10.1093/gbe/evad148

N/A

1.2DataRank · unranked

53 citations

O. Ramos, Melissa Kramer, Sara Goodwin, Sara J. Oppenheim, Daniel J. Becker +5 more

A community-maintained standard library of population genetic models

eLife(2020)10.7554/elife.54967

N/A

0.835DataRank · unranked

260 citations

C. B. Cole, Noah Dukler, Jared Galloway, Ariella Gladstein, Graham Gower +24 more

Teosinte Pollen Drive guides maize diversification and domestication by RNAi

Nature(2024)10.1038/s41586-024-07788-0

N/A

0.547DataRank · unranked

18 citations

Evan Ernst, Jonathan Cahn, Benjamin Roche, Cristiane de Santis Alves, Jason Lynn +7 more

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription

Genes & Development(2022)10.1101/gad.349565.122

N/A

0.489DataRank · unranked

25 citations

Alexandra G. Chivu, Yixin Zhao, Edward J. Rice, Adam Siepel, Charles G. Danko +2 more

A humanized NOVA1 splicing factor alters mouse vocal communications

Nature Communications(2025)10.1038/s41467-025-56579-2

N/A

0.416DataRank · unranked

15 citations

César D. M. Vargas, Keiichi Ito, Wei Wang, Ji‐Dung Luo, Jiawei Xing +7 more

Author Correction: Comparative and demographic analysis of orang-utan genomes

Nature(2022)10.1038/s41586-022-04799-7

Top 67%

0.174DataRank

Top 67%2 citations

LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny +95 more

A Deep-Learning Approach for Inference of Selective Sweeps from the Ancestral Recombination Graph

Molecular Biology and Evolution(2021)10.1093/molbev/msab332

N/A

0DataRank · unranked

77 citations

Ziyi Mo, Leonardo Campagna, Adam Siepel, Hussein A. Hejase

Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data

BMC Biology(2021)10.1186/s12915-021-00949-x

N/A

0DataRank · unranked

65 citations

Yixin Zhao, Yi-Fei Huang, Noah Dukler, Edward J. Rice, Alexandra G. Chivu +4 more

Characterization of Gene Expression Signatures for the Identification of Cellular Heterogeneity in the Developing Mammary Gland

Journal of Mammary Gland Biology and Neoplasia(2021)10.1007/s10911-021-09486-3

N/A

0DataRank · unranked

25 citations

Marygrace C. Trousdell, Samantha L. Cyrill, Yixin Zhao, Mary J. Feigman, Julia M. Bouhuis +4 more

Deconvolution of expression for nascent RNA-sequencing data (DENR) highlights pre-RNA isoform diversity in human cells

Bioinformatics(2021)10.1093/bioinformatics/btab582

N/A

0DataRank · unranked

9 citations

Noah Dukler, Gilad Barshad, Shushan Toneyan, Charles G. Danko, Adam Siepel +1 more

ACE: a probabilistic model for characterizing gene-level essentiality in CRISPR screens

Genome biology(2021)10.1186/s13059-021-02491-z

N/A

0DataRank · unranked

3 citations

Christopher R. Vakoc, Adam Siepel, Elizabeth R. Hutton

Extreme purifying selection against point mutations in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.23.457339

N/A

0DataRank · unranked

8 citations

Mehreen R. Mughal, Ritika Ramani, Yi-Fei Huang, Adam Siepel, Noah Dukler

Deconvolution of Expression for Nascent RNA Sequencing Data (DENR) Highlights Pre-RNA Isoform Diversity in Human Cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.16.435537

N/A

0DataRank · unranked

4 citations

Noah Dukler, Gilad Barshad, Shushan Toneyan, Charles G. Danko, Adam Siepel +1 more

SIA: Selection Inference Using the Ancestral Recombination Graph

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.22.449427

N/A

0DataRank · unranked

4 citations

Ziyi Mo, Leonardo Campagna, Adam Siepel, Hussein A. Hejase

Circadian immunity, sunrise time and the seasonality of respiratory infections

medRxiv(2021)10.1101/2021.03.29.21254556

N/A

0DataRank · unranked

2 citations

Armin Scheben, Joshua Steinberg, Adam Siepel, Robert A. Martienssen, Ziyi Mo

Extreme purifying selection against point mutations in the human genome

Nature Communications(2022)10.1038/s41467-022-31872-6

N/A

0DataRank · unranked

44 citations

Mehreen R. Mughal, Ritika Ramani, Yi-Fei Huang, Adam Siepel, Noah Dukler

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.21.489065

N/A

0DataRank · unranked

5 citations

Alexandra G. Chivu, Yixin Zhao, Edward J. Rice, Adam Siepel, Charles G. Danko +2 more

Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.19.512929

N/A

0DataRank · unranked

2 citations

Lingjie Liu, Adam Siepel, Yixin Zhao

Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells

Research Square(2022)10.21203/rs.3.rs-2247832/v1

N/A

0DataRank · unranked

0 citations

Yixin Zhao, Lingjie Liu, Adam Siepel

Identification of constrained sequence elements across 239 primate genomes

Nature(2023)10.1038/s41586-023-06798-8

N/A

0DataRank · unranked

114 citations

Jacob C. Ulirsch, Sabrina Mohd Rashid, Mohamed Ameen, Laksshman Sundaram, Hickey, Glenn +87 more

Domain-adaptive neural networks improve supervised machine learning based on simulated population genetic data

PLoS Genetics(2023)10.1371/journal.pgen.1011032

N/A

0DataRank · unranked

40 citations

Adam Siepel, Ziyi Mo

Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells

Nucleic Acids Research(2023)10.1093/nar/gkad843

N/A

0DataRank · unranked

14 citations

Lingjie Liu, R. P. Hassett, Adam Siepel, Yixin Zhao

Utility of AlphaMissense predictions in Asparagine Synthetase deficiency variant classification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.30.564808

N/A

0DataRank · unranked

10 citations

Armin Scheben, Adam Siepel, Michael S. Kilberg, Stephen J. Staklinski

Domain-adaptive neural networks improve supervised machine learning based on simulated population genetic data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.01.529396

N/A

0DataRank · unranked

6 citations

Adam Siepel, Ziyi Mo

Teosinte Pollen Drive guides maize diversification and domestication by RNAi

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548689

N/A

0DataRank · unranked

5 citations

Evan Ernst, Jonathan Cahn, Benjamin Roche, Cristiane de Santis Alves, Jason Lynn +6 more

DNA-sequence and epigenomic determinants of local rates of transcription elongation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.21.572932

N/A

0DataRank · unranked

2 citations

Yixin Zhao, Adam Siepel, Lingjie Liu

Single-cell transcription mapping of murine and human mammary organoids responses to female hormones

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.28.559971

N/A

0DataRank · unranked

0 citations

Steven M. Lewis, Michael F. Ciccone, Deeptiman Chatterjee, Samantha Henry, Adam Siepel +2 more

Single-Cell Transcription Mapping of Murine and Human Mammary Organoids Responses to Female Hormones

Journal of Mammary Gland Biology and Neoplasia(2024)10.1007/s10911-023-09553-x

N/A

0DataRank · unranked

13 citations

Steven M. Lewis, Michael F. Ciccone, Deeptiman Chatterjee, Samantha Henry, Adam Siepel +2 more

Clonal Lineage Tracing with Somatic Delivery of Recordable Barcodes Reveals Migration Histories of Metastatic Prostate Cancer

Cancer Discovery(2024)10.1158/2159-8290.cd-23-1332

N/A

0DataRank · unranked

9 citations

Armin Scheben, Billy Lu, Domenic V. Gargiulo, Lucrezia Patruno, Caroline L. Buckholtz +11 more

Probabilistic and machine-learning methods for predicting local rates of transcription elongation from nascent RNA sequencing data

Nucleic Acids Research(2025)10.1093/nar/gkaf092

N/A

0DataRank · unranked

3 citations

Yixin Zhao, R. P. Hassett, Shushan Toneyan, Peter K. Koo, Adam Siepel +1 more

The activity and expression of adenylosuccinate lyase were reduced during modern human evolution, affecting brain and behavior

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2508540122

N/A

0DataRank · unranked

2 citations

Shin‐Yu Lee, Richard Ågren, Laís Ceschini Machado, Jiawei Xing, Chika Azama +8 more

Bayesian inference of tissue-migration histories in metastatic cancer from cell-lineage tracing data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.09.668633

N/A

0DataRank · unranked

2 citations

Armin Scheben, Lise M. Brault, R. P. Hassett, Ryan N. Serio, Jiawei Xing +3 more

VINE: Variational inference for scalable Bayesian reconstruction of species and cell-lineage phylogenies

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.24.696405

N/A

0DataRank · unranked

1 citations

Rebecca Hassett, Stephen J. Staklinski, Adam Siepel

The persistence and loss of hard selective sweeps amid admixture in ancient Eurasians

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.14.682443

N/A

0DataRank · unranked

0 citations

Ziyi Mo, Adam Siepel, Nandita R. Garud, Mariana Harris

Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph

PLoS Genetics(2020)10.1371/journal.pgen.1008895

N/A

0DataRank · unranked

136 citations

Amy L. Williams, Adam Siepel, Melissa J. Hubisz

From Summary Statistics to Gene Trees: Methods for Inferring Positive Selection

Trends in Genetics(2020)10.1016/j.tig.2019.12.008

N/A

0DataRank · unranked

48 citations

Noah Dukler, Adam Siepel, Hussein A. Hejase

Phylogenetic Modeling of Regulatory Element Turnover Based on Epigenomic Data

Molecular Biology and Evolution(2020)10.1093/molbev/msaa073

N/A

0DataRank · unranked

18 citations

Yi-Fei Huang, Adam Siepel, Noah Dukler

Inference of Ancestral Recombination Graphs Using ARGweaver

Methods in molecular biology(2020)10.1007/978-1-0716-0199-0_10

N/A

0DataRank · unranked

46 citations

Adam Siepel, Melissa J. Hubisz

Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.07.977694

N/A

0DataRank · unranked

6 citations

Ayelet Salman‐Minkov, Leonardo Campagna, Melissa J. Hubisz, Irby J. Lovette, Ilan Gronau +2 more

Adam Siepel

Indexed papers

Top data-sharing exemplar

Papers