Daniel Amador‐Noguez

Also affiliated with Great Lakes Bioenergy Research Center, Bioenergy Life Science (United States)

Biochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “The genetics of aerotolerant growth in an alphaproteobacterium with a naturally reduced genome”.

The genetics of aerotolerant growth in an alphaproteobacterium with a naturally reduced genome

mBio(2023)10.1128/mbio.01487-23

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0.539DataRank · unranked

19 citations

Amy B. Banta, Ryan D. Ward, Julio Rivera Vazquez, Magdalena M. Felczak, Michael B. Wolfe +4 more

Species-specific gene regulatory network rewiring mediated by the GATA-type regulator NsdD in Aspergillus

mBio(2025)10.1128/mbio.01181-25

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0.241DataRank · unranked

4 citations

Mi-Kyung Lee, Junha Shin, Sung Chul Park, Julio C. Rivera Vazquez, Daniel Amador‐Noguez +5 more

Design of synthetic human gut microbiome assembly and butyrate production

Nature Communications(2021)10.1038/s41467-021-22938-y

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0DataRank · unranked

203 citations

Bryce Connors, David Stevenson, Susan Hromada, Joshua J. Hamilton, Daniel Amador‐Noguez +2 more

Dominant Bacterial Phyla from the Human Gut Show Widespread Ability To Transform and Conjugate Bile Acids

mSystems(2021)10.1128/msystems.00805-21

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0DataRank · unranked

168 citations

Kelsey L. Barrett, Robert L. Kerby, Q. Zhang, Lea E. Cattaneo, David Stevenson +3 more

Negative interactions determine Clostridioides difficile growth in synthetic human gut communities

Molecular Systems Biology(2021)10.15252/msb.202110355

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0DataRank · unranked

60 citations

Yili Qian, Tyler B. Jacobson, Ryan L. Clark, Lauren Watson, Nasia Safdar +3 more

Stepwise genetic engineering of Pseudomonas putida enables robust heterologous production of prodigiosin and glidobactin A

Metabolic Engineering(2021)10.1016/j.ymben.2021.06.004

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0DataRank · unranked

32 citations

Tyler B. Jacobson, Maya V. Venkataraman, Heike Hofstetter, Daniel Amador‐Noguez, Michael G. Thomas +2 more

Reformulation of an extant ATPase active site to mimic ancestral GTPase activity reveals a nucleotide base requirement for function

eLife(2021)10.7554/elife.65845

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0DataRank · unranked

25 citations

Jailynn Harke, Vivek Anantharaman, Jin Yang, Nikhil Gopalan, Di Wu +7 more

Phagocytes produce prostaglandin E2 in response to cytosolic Listeria monocytogenes

PLoS Pathogens(2021)10.1371/journal.ppat.1009493

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0DataRank · unranked

6 citations

Zachary Morrow, Tighe Christopher, Seonyoung Kim, Drake Carter, David Stevenson +4 more

Comparative functional genomics identifies an iron-limited bottleneck in a Saccharomyces cerevisiae strain with a cytosolic-localized isobutanol pathway

Synthetic and Systems Biotechnology(2022)10.1016/j.synbio.2022.02.007

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0DataRank · unranked

12 citations

Ellen R. Wagner, Tyler B. Jacobson, Mary Tremaine, Laura K. Muehlbauer, Mick McGee +18 more

Rapid Targeted Quantitation of Protein Overexpression with Direct Infusion Shotgun Proteome Analysis (DISPA-PRM)

Analytical Chemistry(2022)10.1021/acs.analchem.1c03243

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17 citations

Alexander S. Hebert, Julio C. Rivera Vazquez, Dain R. Brademan, Mehmet Tatli, Daniel Amador‐Noguez +3 more

Kiss and spit metabolomics highlights the role of the host cN-II enzyme on purine metabolism during pathogen infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.15.496273

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0DataRank · unranked

2 citations

William J. Olson, Andrés M. Tibabuzo Perdomo, David Stevenson, Daniel Amador‐Noguez, Laura J. Knoll +1 more

Kiss and spit metabolomics highlights the role of host purine metabolism during pathogen infection

Research Square(2022)10.21203/rs.3.rs-2167582/v1

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0DataRank · unranked

0 citations

William J. Olson, Andrés M. Tibabuzo Perdomo, David Stevenson, Daniel Amador‐Noguez, Grant Lawrence +3 more

Systematic Analysis of Metabolic Bottlenecks in the Methylerythritol 4-Phosphate (MEP) Pathway of Zymomonas mobilis

mSystems(2023)10.1128/msystems.00092-23

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0DataRank · unranked

20 citations

Mehmet Tatli, Julio Rivera Vazquez, Sarathi M. Weraduwage, Noah Stern, Alexander S. Hebert +6 more

Relative Activities of the β-Ketoacyl-CoA and Acyl-CoA Reductases Influence the Product Profile and Flux in a Reversed β-Oxidation Pathway

ACS Catalysis(2023)10.1021/acscatal.3c00379

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0DataRank · unranked

5 citations

Yun Su, Tyler B. Jacobson, Daven B. Khana, Aditya R. Ailiani, Daniel Amador‐Noguez +2 more

Listeria monocytogenes requires DHNA-dependent intracellular redox homeostasis facilitated by Ndh2 for survival and virulence

Infection and Immunity(2023)10.1128/iai.00022-23

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0DataRank · unranked

5 citations

K Lee, Matthew J. Freeman, David M. Stevenson, Daniel Amador‐Noguez, John‐Demian Sauer +1 more

The Genetics of Aerotolerant Growth in a Naturally Reduced Genome Alphaproteobacterium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.12.544693

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0DataRank · unranked

2 citations

Amy B. Banta, Ryan D. Ward, Julio Rivera Vazquez, Magdalena M. Felczak, Michael B. Wolfe +4 more

Exogenous butyrate inhibits butyrogenic metabolism and alters expression of virulence genes in Clostridioides difficile

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.06.548018

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0DataRank · unranked

2 citations

Horia A. Dobrila, David Stevenson, Nicole M. Davis, Daniel Amador‐Noguez, Andrew J. Hryckowian +1 more

Listeria monocytogenes requires DHNA-dependent intracellular redox homeostasis facilitated by Ndh2 for survival and virulence

Вестник Томского государственного педагогического университета(2023)10.1101/2023.01.13.524026

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0DataRank · unranked

0 citations

Kijeong Lee, David M. Stevenson, Daniel Amador‐Noguez, John‐Demian Sauer, Hans B. Smith

Exogenous butyrate inhibits butyrogenic metabolism and alters virulence phenotypes in Clostridioides difficile

mBio(2024)10.1128/mbio.02535-23

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0DataRank · unranked

20 citations

Horia A. Dobrila, David Stevenson, Nicole D. Hryckowian, Daniel Amador‐Noguez, Andrew J. Hryckowian +1 more

Lipid membrane remodeling and metabolic response during isobutanol and ethanol exposure in Zymomonas mobilis

Biotechnology for Biofuels and Bioproducts(2024)10.1186/s13068-023-02450-9

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0DataRank · unranked

12 citations

Edna A. Trujillo, Jonathan Williams, Fukang She, Fitsum Getahun, Melanie M. Callaghan +3 more

ACAD10 and ACAD11 enable mammalian 4-hydroxy acid lipid catabolism

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.09.574893

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0DataRank · unranked

9 citations

Abigail K. Bartlett, Daven B. Khana, Jingying Zhang, Raghav Jain, Andrew J. H. Smith +10 more

A deoxynucleoside triphosphate triphosphohydrolase promotes cell cycle progression in Caulobacter crescentus

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.25.591158

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0DataRank · unranked

2 citations

David Stevenson, Katarzyna A. Gromek, Daniel Amador‐Noguez, David M. Hershey, Chandler N. Hellenbrand

Allosteric regulation of pyruvate kinase enables efficient and robust gluconeogenesis by preventing metabolic conflicts and carbon overflow

mSystems(2025)10.1128/msystems.01131-24

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0DataRank · unranked

9 citations

Brent W. Anderson, Daven B. Khana, Shenwei Zhang, Wieland Steinchen, Danny K. Fung +9 more

GPR41 deficiency alters the gut microbiota-bile acid axis, reduces ileal expression of Npc1l1 , and attenuates hypercholesterolemia in male mice

Gut Microbes(2025)10.1080/19490976.2025.2598957

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0DataRank · unranked

4 citations

Jillella Mallikarjun, Jungick Byun, Lauren N. Lucas, Kazuyuki Kasahara, Michael M. Tallon +7 more

A deoxynucleoside triphosphate triphosphohydrolase promotes cell cycle progression in Caulobacter crescentus

Journal of Bacteriology(2025)10.1128/jb.00145-25

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0DataRank · unranked

2 citations

David Stevenson, Katarzyna A. Gromek, Daniel Amador‐Noguez, David M. Hershey, Chandler N. Hellenbrand

Thermodynamics shapes the in vivo enzyme burden of glycolytic pathways

mBio(2025)10.1128/mbio.01837-25

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0DataRank · unranked

2 citations

Annie Jen, Evgenia Shishkova, Kirsten Fisher, Eashant Thusoo, Jonathan Williams +5 more

Investigation of Bile Salt Hydrolase Activity in Human Gut Bacteria Reveals Production of Conjugated Secondary Bile Acids

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.16.633392

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0DataRank · unranked

11 citations

Jillella Mallikarjun, Lea E. Cattaneo, Bhavana Gangwar, Qijun Zhang, Robert L. Kerby +4 more

Thermodynamics shape the in vivo enzyme burden of glycolytic pathways

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.31.635972

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0DataRank · unranked

2 citations

Annie Jen, Evgenia Shishkova, Eashant Thusoo, Jonathan Williams, Alex Henkel +4 more

Dual metabolomic profiling uncovers Toxoplasma manipulation of the host metabolome and the discovery of a novel parasite metabolic capability

PLoS Pathogens(2020)10.1371/journal.ppat.1008432

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0DataRank · unranked

61 citations

Bruno Martorelli Di Genova, Gina M. Gallego-López, Anthony R. Dawson, David Stevenson, Daniel Amador‐Noguez +2 more

A shared alarmone-GTP switch underlies triggered and spontaneous persistence

Research Square(2025)10.21203/rs.3.rs-5679108/v1

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0DataRank · unranked

0 citations

Danny K. Fung, Jessica T. Barra, Jeremy W. Schroeder, Jin Yang, Fukang She +4 more

Design of synthetic human gut microbiome assembly and function

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.19.241315

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0DataRank · unranked

8 citations

Bryce Connors, David Stevenson, Susan Hromada, Joshua J. Hamilton, Daniel Amador‐Noguez +2 more