Qiyun Zhu

Also affiliated with Chinese Academy of Sciences, Shaoguan University, University of California San Diego, Institute of Subtropical Agriculture, University of Chinese Academy of Sciences, Arizona State University

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.2Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-01845-1

Top 5%

4.4DataRank

Top 5%629 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Papers

Driven by 42 papers — median percentile 90. Top paper: “Greengenes2 unifies microbial data in a single reference tree”.

Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-01845-1

Top 5%

4.4DataRank

Top 5%629 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Nature Microbiology(2022)10.1038/s41564-022-01266-x

Top 7%

3.0DataRank

Top 7%191 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +89 more

Enhancing untargeted metabolomics using metadata-based source annotation

Nature Biotechnology(2022)10.1038/s41587-022-01368-1

N/A

2.0DataRank · unranked

79 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +68 more

Greengenes2 enables a shared data universe for microbiome studies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.19.520774

Top 13%

1.6DataRank

Top 13%44 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Nature Communications(2020)10.1038/s41467-020-16366-7

N/A

1.0DataRank · unranked

855 citations

Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi +13 more

OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438427

N/A

0.752DataRank · unranked

20 citations

Shi Huang, Antonio G. González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

mSystems(2022)10.1128/msystems.00167-22

N/A

0.727DataRank · unranked

126 citations

Shi Huang, Antonio González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

Nature Chemical Biology(2020)10.1038/s41589-020-00677-3

N/A

0.710DataRank · unranked

113 citations

Yoshiki Vázquez‐Baeza, Julia M. Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito +15 more

A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables

Nature Microbiology(2024)10.1038/s41564-023-01580-y

N/A

0.652DataRank · unranked

76 citations

Aeriel D. Belk, Bridget B. McGivern, Amina Bouslimani, Parsa Ghadermazi, Cameron Martino +32 more

Robustness of cancer microbiome signals over a broad range of methodological variation

Oncogene(2024)10.1038/s41388-024-02974-w

N/A

0.628DataRank · unranked

65 citations

Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George I. Austin +16 more

Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

Genome Research(2021)10.1101/gr.275777.121

N/A

0.574DataRank · unranked

45 citations

Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri +18 more

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.238444

N/A

0.546DataRank · unranked

37 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Clarisse Marotz, Se Jin Song +31 more

Author Correction: Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-02026-w

N/A

0.470DataRank · unranked

22 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References

mSystems(2022)10.1128/msystems.00758-22

N/A

0.457DataRank · unranked

20 citations

Stephen Wandro, Karsten Zengler, Lívia S. Zaramela, Brent Nowinski, Austin D. Swafford +6 more

Metagenomics reveals novel microbial signatures of farm exposures in house dust

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1202194

N/A

0.442DataRank · unranked

18 citations

Kathryn R. Dalton, Mi Kyeong Lee, Christine G. Parks, Laura E. Beane Freeman, Qiyun Zhu +6 more

Reference data based insights expand understanding of human metabolomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.08.194159

N/A

0.360DataRank · unranked

10 citations

Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi, Francesca Di Ottavio +59 more

Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.04.446988

N/A

0.330DataRank · unranked

8 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +45 more

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

mBio(2025)10.1128/mbio.04015-24

N/A

0.208DataRank · unranked

3 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia +60 more

The prevalence of motility-related genes within the human oral microbiota

Microbiology Spectrum(2024)10.1128/spectrum.01264-24

Top 67%

0.176DataRank

Top 67%2 citations

Dhara D. Shah, Qiyun Zhu, Abhishek Shrivastava, Sofia T. Rocha

Author Correction: Generation of accurate, expandable phylogenomic trees with uDance

Nature Biotechnology(2023)10.1038/s41587-023-02027-9

N/A

0DataRank · unranked

0 citations

Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab +1 more

The dichotomous roles of microbial-modified bile acids 7-oxo-DCA and isoDCA in intestinal tumorigenesis

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2317596121

N/A

0DataRank · unranked

19 citations

Fei Sun, Henry Secaira-Morocho, Alisa Hui, Ke Wang, Chunmiao Cai +13 more

House dust metagenome and pulmonary function in a US farming population

Microbiome(2024)10.1186/s40168-024-01823-y

N/A

0DataRank · unranked

2 citations

Abhishek Kaul, James M. Ward, Qiyun Zhu, Marie Richards, Ziyue Wang +8 more

Metatranscriptomics uncovers diurnal functional shifts in bacterial transgenes with profound metabolic effects

Cell Host & Microbe(2025)10.1016/j.chom.2025.05.024

N/A

0DataRank · unranked

18 citations

Nicole Siguenza, Wuling Zhong, Ipsita Mohanty, Amulya Lingaraju, R. Alexander Richter +12 more

Augmenting microbial phylogenomic signal with tailored marker gene sets

Nature Communications(2025)10.1038/s41467-025-64881-2

N/A

0DataRank · unranked

1 citations

Xiaofang Jiang, Qiyun Zhu, Henry Secaira-Morocho

SHOGUN: a modular, accurate and scalable framework for microbiome quantification

Bioinformatics(2020)10.1093/bioinformatics/btaa277

N/A

0DataRank · unranked

64 citations

Gabriel A. Al‐Ghalith, Robin Shields‐Cutler, Qiyun Zhu, Rob Knight, Dan Knights +1 more

Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.077636

N/A

0DataRank · unranked

17 citations

Yoshiki Vázquez‐Baeza, Julia M. Gauglitz, Mingxun Wang, Kai Dührkop, Mélissa Nothias-Esposito +14 more

Challenges in Benchmarking Metagenomic Profilers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.14.382994

N/A

0DataRank · unranked

4 citations

Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri +6 more

Challenges in Benchmarking Metagenomic Profilers

Research Square(2020)10.21203/rs.3.rs-109702/v1

N/A

0DataRank · unranked

0 citations

Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen +6 more

Challenges in benchmarking metagenomic profilers

Nature Methods(2021)10.1038/s41592-021-01141-3

N/A

0DataRank · unranked

157 citations

Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri +6 more

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome

Microbiome(2021)10.1186/s40168-021-01102-0

N/A

0DataRank · unranked

63 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +10 more

A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria

Marine Drugs(2021)10.3390/md19010020

N/A

0DataRank · unranked

39 citations

Mingxun Wang, Nathan A. Moss, Ricardo Silva, Jon G. Sanders, Sergey Nurk +16 more

Peripheral Neuronal Activation Shapes the Microbiome and Alters Gut Physiology

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.12.439539

N/A

0DataRank · unranked

6 citations

Bryan B. Yoo, Peter Thuy-Boun, Victor Cantu, Kelly C. Weldon, Collin Challis +14 more

Universal adaptive evolution strategy of probiotic Lactobacillus plantarum to gut selection pressure from humans, mice and zebrafish

Research Square(2021)10.21203/rs.3.rs-106737/v1

N/A

0DataRank · unranked

0 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +9 more

Reference data-set driven metabolomics

Research Square(2021)10.21203/rs.3.rs-654519/v1

N/A

0DataRank · unranked

0 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +69 more

Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions

Cell(2022)10.1016/j.cell.2022.09.005

N/A

0DataRank · unranked

510 citations

Gregory D. Sepich‐Poore, Ilana Livyatan, Omer Asraf, Cameron Martino, Deborah Nejman +21 more

DEPP: Deep Learning Enables Extending Species Trees using Single Genes

Systematic Biology(2022)10.1093/sysbio/syac031

N/A

0DataRank · unranked

36 citations

Metin Balaban, Qiyun Zhu, Siavash Mirarab, Yueyu Jiang

Microbiome and metabolome profiles of high screen time in a cohort of healthy college students

Scientific Reports(2022)10.1038/s41598-022-07381-3

N/A

0DataRank · unranked

20 citations

Alex E. Mohr, Xiaojian Shi, Tara Mahmood, Qiyun Zhu, Meg Bruening +3 more

Distinct Nausea Profiles Are Associated With Gastrointestinal Symptoms in Oncology Patients Receiving Chemotherapy

Cancer Nursing(2022)10.1097/ncc.0000000000001076

N/A

0DataRank · unranked

8 citations

Keenan A. Pituch, Qiyun Zhu, Haiwei Gu, Brenda Ernst, Cindy Tofthagen +9 more

Ulcerative Colitis Host-Microbiome Response to Hyperbaric Oxygen Therapy

medRxiv(2022)10.1101/2022.01.14.22269325

N/A

0DataRank · unranked

2 citations

Robert H. Mills, Melissa C. Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E. Widjaja +31 more

Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression

Cell Reports(2023)10.1016/j.celrep.2023.112997

N/A

0DataRank · unranked

80 citations

Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Zech Xu, Tae Gyu Oh +21 more

Generation of accurate, expandable phylogenomic trees with uDance

Nature Biotechnology(2023)10.1038/s41587-023-01868-8

N/A

0DataRank · unranked

22 citations

Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab +1 more

Metagenomics reveals novel microbial signatures of farm exposures in house dust

medRxiv(2023)10.1101/2023.04.07.23288301

N/A

0DataRank · unranked

7 citations

Kathryn R. Dalton, Mi Kyeong Lee, Christine G. Parks, Laura E. Beane Freeman, Qiyun Zhu +6 more

Qiyun Zhu

Indexed papers

Top data-sharing exemplar

Papers