🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Johanna Klughammer

LMU Klinikum

ORCID: 0000-0002-3628-9278

Also affiliated with Ludwig-Maximilians-Universität München

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.3Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1
Top 4%
5.6DataRank
Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Papers

Driven by 18 papers — median percentile 68. Top paper: “A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors”.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1
Top 4%
5.6DataRank
Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/761429
N/A
2.5DataRank · unranked
68 citations

Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Indresh Singh +44 more

TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics

Nature Biotechnology(2023)10.1038/s41587-023-01657-3
N/A
2.0DataRank · unranked
86 citations

Noa Moriel, Inbal Avraham‐Davidi, Evan Murray, Jan Watter, Fei Chen +5 more

High-density spatial transcriptomics arrays for in situ tissue profiling

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/563338
N/A
1.9DataRank · unranked
25 citations

Johanna Klughammer, Linnea Stenbeck, Fredrik Salmén, Tarmo Äijö, Richard Bonneau +9 more

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2024)10.1038/s41591-024-03215-z
Top 15%
1.3DataRank
Top 15%91 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

High-definition spatial transcriptomics for in situ tissue profiling

Nature Methods(2019)10.1038/s41592-019-0548-y
N/A
1.1DataRank · unranked
1196 citations

Gökçen Eraslan, Fredrik Salmén, Johanna Klughammer, Linnea Stenbeck, Denis Schapiro +13 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.508492
N/A
0.946DataRank · unranked
16 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems

Science(2021)10.1126/science.aax2656
N/A
0.902DataRank · unranked
408 citations

Daniel R. Goodwin, Anubhav Sinha, Asmamaw T. Wassie, Fei Chen, Evan R. Daugharthy +164 more

Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states

Nature Genetics(2021)10.1038/s41588-021-00927-7
N/A
0.824DataRank · unranked
242 citations

Federico Gaiti, Dana Silverbush, Joshua S. Schiffman, Hannah R. Weisman, Lloyd Kluegel +18 more

SM-Omics: An automated platform for high-throughput spatial multi-omics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.14.338418
N/A
0.760DataRank · unranked
7 citations

Britta Lötstedt, Johanna Klughammer, Åsa Segerstolpe, Orit Rozenblatt–Rosen, Prisca Liberali +1 more

TACCO: Unified annotation transfer and decomposition of cell identities for single-cell and spatial omics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.508471
Top 49%
0.360DataRank
Top 49%8 citations

Noa Moriel, Evan Murray, Fei Chen, Johanna Klughammer, Prisca Liberali +4 more

SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

Genome Biology(2025)10.1186/s13059-025-03573-y
N/A
0.107DataRank · unranked
1 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Robert Strasser +16 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

eLife(2025)10.7554/elife.104815
N/A
0.104DataRank · unranked
1 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2025)10.1038/s41591-025-03665-z
N/A
0.104DataRank · unranked
1 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.25.517982
N/A
0DataRank · unranked
0 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Ofir Cohen +13 more

HTAPP_Designing gene panels for metastatic breast cancer targeted spatial transcriptomics assays v1

(2021)10.17504/protocols.io.bw83phyn
Top 100%
0DataRank
Top 100%0 citations

Nikhil Wagle, Orit Rozenblatt–Rosen, Prisca Liberali, Daniel L. Abravanel, Bruce E. Johnson +2 more

Inference of single cell profiles from histology stains with the Single Cell omics from Histology Analysis Framework (SCHAF)

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.21.533680
N/A
0DataRank · unranked
36 citations

Xingjian Chen, Eeshit Dhaval Vaishnav, Koseki J. Kobayashi-Kirschvink, Metamia Ciampricotti, Ke Zhang +30 more

Author response: Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

(2025)10.7554/elife.104815.3.sa2
N/A
0DataRank · unranked
0 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +26 more