Emek Demir

Also affiliated with Oregon Medical Research Center

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

13.5Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The reactome pathway knowledgebase 2022

Nucleic Acids Research(2021)10.1093/nar/gkab1028

Top 2%

7.9DataRank

Top 2%2570 citations

Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +30 more

Papers

Driven by 20 papers — median percentile 97. Top paper: “The reactome pathway knowledgebase 2022”.

The reactome pathway knowledgebase 2022

Nucleic Acids Research(2021)10.1093/nar/gkab1028

Top 2%

7.9DataRank

Top 2%2570 citations

Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +30 more

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

MITI minimum information guidelines for highly multiplexed tissue images

Nature Methods(2022)10.1038/s41592-022-01415-4

N/A

1.7DataRank · unranked

88 citations

Clarence Yapp, Artem Sokolov, Sheila M. Reynolds, Yu-An Chen, Damir Sudar +95 more

Multiplex imaging of localized prostate tumors reveals altered spatial organization of AR-positive cells in the microenvironment

iScience(2024)10.1016/j.isci.2024.110668

N/A

0.426DataRank · unranked

11 citations

Zeynep Sayar, Guillaume Thibault, Erik A. Burlingame, Marigold Kuykendall, Jennifer Eng +12 more

Analyzing causal relationships in proteomic profiles using CausalPath

STAR Protocols(2021)10.1016/j.xpro.2021.100955

N/A

0DataRank · unranked

15 citations

Metin Can Siper, Anil Korkut, Funda Durupınar, Uğur Doğrusöz, Joseph E. Aslan +4 more

Systematic interrogation of mutation groupings reveals divergent downstream expression programs within key cancer genes

BMC Bioinformatics(2021)10.1186/s12859-021-04147-y

N/A

0DataRank · unranked

1 citations

Hannah D. Holly, Julia Somers, Emek Demir, Michal R. Grzadkowski

A flexible search system for high-accuracy identification of biological entities and molecules

The Journal of Open Source Software(2021)10.21105/joss.03756

N/A

0DataRank · unranked

1 citations

Jeffrey V. Wong, Metin Can Siper, Christian Dallago, John Giorgi, Emek Demir +3 more

Capturing scientific knowledge in computable form

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.382333

N/A

0DataRank · unranked

2 citations

Max Franz, Metin Can Siper, Dylan Fong, Funda Durupınar, Christian Dallago +10 more

Ongoing Replication Stress Response and New Clonal T Cell Development Discriminate Between Liver and Lung Recurrence Sites and Patient Outcomes in Pancreatic Ductal Adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.04.490552

N/A

0DataRank · unranked

3 citations

Carl Pelz, Patrick J. Worth, Sydney Owen, Dove Keith, Ellen M. Langer +19 more

Disruption of the MYC Superenhancer Complex by Dual Targeting of FLT3 and LSD1 in Acute Myeloid Leukemia

Molecular Cancer Research(2023)10.1158/1541-7786.mcr-22-0745

N/A

0DataRank · unranked

8 citations

Brittany M. Curtiss, Daniel J. Coleman, Jake VanCampen, Garth Kong, Jommel Macaraeg +10 more

Longitudinal and multimodal auditing of tumor adaptation to CDK4/6 inhibitors in HR+ metastatic breast cancers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.27.557464

N/A

0DataRank · unranked

1 citations

Julian Egger, Cameron Watson, Shamilene Sivagnanam, Koei Chin, Kevin Hawthorne +18 more

Computational modeling of methylation impact of AML drivers reveals new pathways and refines AML risk-stratification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.17.541249

N/A

0DataRank · unranked

0 citations

Jeffrey Tyner, Emek Demir, Brian Druker, Paul T. Spellman, Burcu Gurun

Multiplex imaging of localized prostate tumors reveals changes in mast cell type composition and spatial organization of AR-positive cells in the tumor microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.18.553854

N/A

0DataRank · unranked

0 citations

Zeynep Sayar, Guillaume Thibault, Erik A. Burlingame, Jennifer Eng, Alex Chitsazan +10 more

Predicting transcription factor activity using prior biological information

iScience(2024)10.1016/j.isci.2024.109124

N/A

0DataRank · unranked

16 citations

Joseph Estabrook, Hannah D. Holly, Julia Somers, Olga Nikolova, Özgün Babur +3 more

Ongoing replication stress tolerance and clonal T cell responses distinguish liver and lung recurrence and outcomes in pancreatic cancer

Nature Cancer(2025)10.1038/s43018-024-00881-3

N/A

0DataRank · unranked

33 citations

Jennifer Eng, Carl Pelz, Kevin Hawthorne, Patrick J. Worth, Shamilene Sivagnanam +33 more

Targeting the CD74 signaling axis suppresses inflammation and rescues defective hematopoiesis in RUNX1 -familial platelet disorder

Science Translational Medicine(2025)10.1126/scitranslmed.adn9832

N/A

0DataRank · unranked

16 citations

Trevor Enright, Adam DuVall, Alex Chitsazan, Hsin‐Yun Lin, Aysegul Ors +21 more

A Roadmap for the Future of Systems Biology in Cancer Research

Cancer Research(2025)10.1158/0008-5472.can-25-0700

N/A

0DataRank · unranked

2 citations

Carlos F. Lopez, Andréi S. Rodin, Russell C. Rockne, Thomas E. Yankeelov, Herbert M Sauro +23 more

SBML Level 3: an extensible format for the exchange and reuse of biological models

Molecular Systems Biology(2020)10.15252/msb.20199110

N/A

0DataRank · unranked

311 citations

Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya +95 more

Phosphoproteomic quantitation and causal analysis reveal pathways in GPVI/ITAM-mediated platelet activation programs

Blood(2020)10.1182/blood.2020005496

N/A

0DataRank · unranked

85 citations

Alexander R. Melrose, Jennifer M. Cunliffe, John Klimek, Jiaqing Pang, Anna-Liisa I. Sepp +12 more

Causal interactions from proteomic profiles: Molecular data meet pathway knowledge

Patterns(2021)10.1016/j.patter.2021.100257

N/A

0DataRank · unranked

90 citations

Augustin Luna, Anil Korkut, Funda Durupınar, Metin Can Siper, Uğur Doğrusöz +9 more

Emek Demir

Indexed papers

Top data-sharing exemplar

Papers