🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Åsa Segerstolpe

Broad Institute

ORCID: 0000-0002-3700-9661

Also affiliated with Daicel (Japan), Klarman Cell Observatory

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
4.5Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.272831
Top 11%
1.9DataRank
Top 11%36 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +15 more

Papers

Driven by 26 papers — median percentile 81. Top paper: “COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets”.

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

Nature(2021)10.1038/s41586-021-03570-8
N/A
10.7DataRank · unranked
879 citations

Carly G.K. Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe +95 more

Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma

Nature Medicine(2021)10.1038/s41591-020-01212-6
N/A
3.5DataRank · unranked
127 citations

Cyril Neftel, Marni E. Shore, Hannah R. Weisman, Nathan D. Mathewson, Matthew J. McBride +50 more

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.272831
Top 11%
1.9DataRank
Top 11%36 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +15 more

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2024)10.1038/s41591-024-03215-z
Top 15%
1.3DataRank
Top 15%91 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

Nature Methods(2021)10.1038/s41592-021-01264-7
N/A
1.0DataRank · unranked
856 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +17 more

Spatially restricted immune and microbiota-driven adaptation of the gut

Nature(2024)10.1038/s41586-024-08216-z
N/A
0.911DataRank · unranked
41 citations

Chenhao Li, Åsa Segerstolpe, Eric M. Brown, Rebecca Weisberg, Toru Nakata +6 more

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574538
Top 22%
0.898DataRank
Top 22%34 citations

Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper +53 more

Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity

Hepatology Communications(2021)10.1002/hep4.1854
N/A
0.845DataRank · unranked
278 citations

Jawairia Atif, Jeff C. Liu, Catia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni +18 more

SM-Omics: An automated platform for high-throughput spatial multi-omics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.14.338418
N/A
0.760DataRank · unranked
7 citations

Britta Lötstedt, Johanna Klughammer, Åsa Segerstolpe, Orit Rozenblatt–Rosen, Prisca Liberali +1 more

Single-cell and spatial transcriptomics of stricturing Crohn’s disease highlights a fibrosis-associated network

Nature Genetics(2025)10.1038/s41588-025-02225-y
N/A
0.647DataRank · unranked
34 citations

Sathish Subramanian, Åsa Segerstolpe, Vy Anh Tran, Angela Shih, Grace T. Carter +19 more

Single Cell, Single Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.27.436882
N/A
0.631DataRank · unranked
15 citations

Jawairia Atif, Jeff C. Liu, Cátia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni +15 more

Transcriptomic and spatial dissection of human ex vivo right atrial tissue reveals proinflammatory microvascular changes in ischemic heart disease

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101556
N/A
0.538DataRank · unranked
16 citations

Eloi Schmauch, Kyriakitsa Galani, Johannes Ojanen, Carles B. Adsera, Tiit Örd +26 more

Genetic vulnerability to Crohn’s disease reveals a spatially resolved epithelial restitution program

Science Translational Medicine(2023)10.1126/scitranslmed.adg5252
N/A
0.507DataRank · unranked
13 citations

Chenhao Li, Toufic Mayassi, Helen Lin, Koushik Ghosh, Åsa Segerstolpe +14 more

Cardiovascular disease causes proinflammatory microvascular changes in the human right atrium

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.23.449672
N/A
0.396DataRank · unranked
6 citations

Eloi Schmauch, Kyriakitsa Galani, Johannes Ojanen, Carles B. Adsera, Tiit Örd +26 more

A cellular and spatial atlas of TP53-associated tissue remodeling defines a multicellular tumor ecosystem in lung adenocarcinoma

Nature Cancer(2025)10.1038/s43018-025-01053-7
N/A
0.351DataRank · unranked
9 citations

Thinh T. Nguyen, Atharva Bhagwat, Akhil Kumar, Bruno Giotti, Benjamin Kepecs +29 more

A cellular and spatial atlas of TP53 -associated tissue remodeling in lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546977
Top 50%
0.349DataRank
Top 50%5 citations

Benjamin Kepecs, Navin R. Mahadevan, Jason L. Weirather, Naomi R. Besson, Bruno Giotti +19 more

Translational genetics identifies a phosphorylation switch in CARD9 required for innate inflammatory responses

Cell Reports(2024)10.1016/j.celrep.2024.113944
N/A
0.249DataRank · unranked
4 citations

Zhifang Cao, Chirag Krishna, Jennifer L. Reedy, Xiebin Gu, Richard A. Dutko +12 more

HTAPP_TST- Nuclei isolation from frozen tissue v2

(2020)10.17504/protocols.io.bhbcj2iw
N/A
0.219DataRank · unranked
1 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Prisca Liberali, Åsa Segerstolpe +2 more

SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

Genome Biology(2025)10.1186/s13059-025-03573-y
N/A
0.107DataRank · unranked
1 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Robert Strasser +16 more

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2025)10.1038/s41591-025-03665-z
N/A
0.104DataRank · unranked
1 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

HTAPP_CST- Nuclei isolation from frozen tissue v2

(2020)10.17504/protocols.io.bhbej2je
N/A
0DataRank · unranked
0 citations

Nicholas Van Wittenberghe, Michal Slyper, Julia Waldman, Orit Rozenblatt–Rosen, Prisca Liberali +3 more

HTAPP_OCT-embedded frozen tissue sectioning and mounting on Visium specialized slides v1

(2020)10.17504/protocols.io.bqm3mu8n
N/A
0DataRank · unranked
0 citations

Orit Rozenblatt–Rosen, Prisca Liberali, Åsa Segerstolpe, Orit Rozenblatt‐Rosen

Cardiovascular Disease Causes Proinflammatory Microvascular Changes in the Human Right Atrium

SSRN Electronic Journal(2023)10.2139/ssrn.4353420
N/A
0DataRank · unranked
0 citations

Eloi Schmauch, Kiki Galani, Johannes Ojanen, Tiit Örd, Anu Toropainen +26 more

SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.25.517982
N/A
0DataRank · unranked
0 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Ofir Cohen +13 more

Inference of single cell profiles from histology stains with the Single Cell omics from Histology Analysis Framework (SCHAF)

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.21.533680
N/A
0DataRank · unranked
36 citations

Xingjian Chen, Eeshit Dhaval Vaishnav, Koseki J. Kobayashi-Kirschvink, Metamia Ciampricotti, Ke Zhang +30 more

Single-cell and spatial characterization of ischemic heart disease and heart failure from ex-vivo biopsies reveals inflammatory and vascular changes in the right atrium

Atherosclerosis(2023)10.1016/j.atherosclerosis.2023.06.932
N/A
0DataRank · unranked
0 citations

K. Galani, Prosanta K. Singha, K. Harju, Guillermo Garcia-Cardeña, Eloi Schmauch +23 more