José C. Clemente

Also affiliated with Icahn School of Medicine at Mount Sinai

Biochemistry, Genetics and Molecular BiologyMedicineHealth Professions

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.4Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Papers

Driven by 41 papers — median percentile 98. Top paper: “A framework for human microbiome research”.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Episodic Aspiration with Oral Commensals Induces a MyD88-Dependent, Pulmonary T-Helper Cell Type 17 Response that Mitigates Susceptibility to Streptococcus Pneumoniae

American Journal of Respiratory and Critical Care Medicine(2020)10.1164/rccm.202005-1596oc

N/A

3.9DataRank · unranked

138 citations

Imran Sulaiman, Jun-Chieh J. Tsay, Luisanny Perez, Brendan Franca, Yonghua Li +22 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Nature Biotechnology(2013)10.1038/nbt.2676

N/A

1.4DataRank · unranked

9259 citations

Jesse Zaneveld, J. Gregory Caporaso, Daniel McDonald, Dan Knights, Joshua A Reyes +8 more

Targeted Microbial Shifts and Metabolite Profiles Were Associated with Clinical Response to an Anti-Inflammatory Diet in Osteoarthritis

Nutrients(2025)10.3390/nu17172729

N/A

0.273DataRank · unranked

5 citations

Kevin Bu, Roxana Coras, Martha Cedeño, Simone Zuffa, Jessica Murillo‐Saich +16 more

Bad company? The pericardium microbiome in people investigated for tuberculous pericarditis in an HIV-prevalent setting

Microbes and Infection(2024)10.1016/j.micinf.2024.105434

N/A

0.241DataRank · unranked

4 citations

C Naidoo, Benjamin G. Wu, Benjamin Kwok, José C. Clemente, Yonghua Li +13 more

Quantification of discrete gut bacterial strains following fecal transplantation for recurrent Clostridioides difficile infection demonstrates long-term stable engraftment in non-relapsing recipients

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.10.292136

N/A

0DataRank · unranked

4 citations

Ilaria Mogno, Zhihua Li, Chao Yang, Graham J. Britton, Alice Chen-Liaw +8 more

Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome

Nature Microbiology(2021)10.1038/s41564-021-00961-5

N/A

0DataRank · unranked

196 citations

Matthew Chung, Luis F. Angel, Jun-Chieh J. Tsay, Benjamin G. Wu, Stephen T. Yeung +47 more

Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes

Nature Microbiology(2021)10.1038/s41564-021-00966-0

N/A

0DataRank · unranked

142 citations

Ilaria Mogno, Zhihua Li, Chao Yang, Graham J. Britton, Alice Chen-Liaw +8 more

Anaerobe-enriched gut microbiota predicts pro-inflammatory responses in pulmonary tuberculosis

EBioMedicine(2021)10.1016/j.ebiom.2021.103374

N/A

0DataRank · unranked

55 citations

Georgina Nyawo, Imran Sulaiman, Benjamin G. Wu, Carolin T. Turner, Kevin Bu +14 more

Traditional Farming Lifestyle in Old Older Mennonites Modulates Human Milk Composition

Frontiers in Immunology(2021)10.3389/fimmu.2021.741513

N/A

0DataRank · unranked

20 citations

Rakin A. Choudhury, Catherine Pizzarello, Rohith Palli, Sade Fridy, Puja S. Rajani +14 more

An integrative study of the microbiome gut-brain-axis and hippocampal inflammation in psychosis: Persistent effects from mode of birth

Schizophrenia Research(2021)10.1016/j.schres.2021.09.019

N/A

0DataRank · unranked

14 citations

José C. Clemente, Enrica Piras, David Wallach, Jessica Robinson‐Papp, Emeka Boka +11 more

Identifying correlations driven by influential observations in large datasets

Briefings in Bioinformatics(2021)10.1093/bib/bbab482

N/A

0DataRank · unranked

11 citations

David Wallach, Zach Wilson, Nan Shen, Leopoldo N. Segal, Emilia Bagiella +2 more

Infant Nasopharyngeal Microbiota Subphenotypes and Early Childhood Lung Function: Evidence from a Rural Ghanaian Pregnancy Cohort

International Journal of Environmental Research and Public Health(2021)10.3390/ijerph18147276

N/A

0DataRank · unranked

6 citations

Seyram Kaali, Darby Jack, Rebecca Kyerewaa Dwommoh Prah, José C. Clemente, Theresa Tawiah +10 more

Viral Inactivation Impacts Microbiome Estimates in a Tissue-Specific Manner

mSystems(2021)10.1128/msystems.00674-21

N/A

0DataRank · unranked

2 citations

Enrica Piras, Kevin Bu, David Wallach, Matthew Stapylton, Ana Fernández-Sesma +3 more

Microbial signatures in the lower airways of mechanically ventilated COVID19 patients associated with poor clinical outcome

medRxiv(2021)10.1101/2021.02.23.21252221

N/A

0DataRank · unranked

20 citations

Matthew Chung, Luis F. Angel, Jun-Chieh J. Tsay, Benjamin G. Wu, Stephen T. Yeung +47 more

Mining the microbiota to identify gut commensals modulating neuroinflammation in a mouse model of multiple sclerosis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.10.468120

N/A

0DataRank · unranked

5 citations

Graham J. Britton, David Wallach, Emma Smith, Laura M. Cox, Shirong Liu +6 more

Mining the microbiota to identify gut commensals modulating neuroinflammation in a mouse model of multiple sclerosis

Microbiome(2022)10.1186/s40168-022-01364-2

N/A

0DataRank · unranked

78 citations

Graham J. Britton, David Wallach, Emma Smith, Laura M. Cox, Shirong Liu +6 more

Patient-reported exposures and outcomes link the gut-brain axis and inflammatory pathways to specific symptoms of severe mental illness

Psychiatry Research(2022)10.1016/j.psychres.2022.114526

N/A

0DataRank · unranked

14 citations

Lauren R Koralnik, Mharisi Bonner, Deborah Goetz, Peter Joe, Jakleen Lee +6 more

More thanMycobacterium tuberculosis:site-of-disease microbial communities, and their functional and clinical profiles in tuberculous lymphadenitis

Thorax(2022)10.1136/thorax-2022-219103

N/A

0DataRank · unranked

7 citations

C Naidoo, Benjamin G. Wu, Imran Sulaiman, José C. Clemente, Yonghua Li +12 more

More than Mycobacterium tuberculosis : specific site-of-disease microbial communities, functional capacities, and their distinct clinical profiles in tuberculous lymphadenitis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.16.496073

N/A

0DataRank · unranked

1 citations

C Naidoo, Benjamin G. Wu, Imran Sulaiman, José C. Clemente, Yonghua Li +12 more

Lower Airway Dysbiosis Augments Lung Inflammatory Injury in Mild-to-Moderate Chronic Obstructive Pulmonary Disease

American Journal of Respiratory and Critical Care Medicine(2023)10.1164/rccm.202210-1865oc

N/A

0DataRank · unranked

45 citations

Benjamin G. Wu, Matthew Chung, Bradley Isaacs, Jun-Chieh J. Tsay, Meredith Holub +25 more

Gut and oral microbiome modulate molecular and clinical markers of schizophrenia-related symptoms: A transdiagnostic, multilevel pilot study

Psychiatry Research(2023)10.1016/j.psychres.2023.115279

N/A

0DataRank · unranked

34 citations

Enrica Piras, Sabrina Tamburini, Kevin Bu, David Wallach, Brooke Remsen +13 more

Associations between Ileal Juice Bile Acids and Colorectal Advanced Adenoma

Nutrients(2023)10.3390/nu15132930

N/A

0DataRank · unranked

8 citations

Chi Thanh Tran, Renwei Wang, Mai Vu‐Tuyet Nguyen, Mo Thi Tran, Thuy Thi‐Van Tuong +17 more

Oral vancomycin treatment suppresses gut trypsin activity and preserves intestinal barrier function during EAE

iScience(2023)10.1016/j.isci.2023.108143

N/A

0DataRank · unranked

6 citations

Kacper Iwanowski, Emma Smith, Adam Cantor, Paola Leone, Gerold Bongers +7 more

Multi-omic Biomarkers Distinguish Rheumatoid Arthritis in Discordant Monozygotic Twins

medRxiv(2024)10.1101/2024.12.30.24319783

N/A

0DataRank · unranked

3 citations

Kevin Bu, Weixi Chen, Ian Cunningham, Jeremy Sokolove, Lauren J. Lahey +10 more

Bad company? The pericardium microbiome in people investigated for tuberculosis pericarditis in an HIV-prevalent setting

medRxiv(2024)10.1101/2024.04.26.24306431

N/A

0DataRank · unranked

1 citations

C Naidoo, Benjamin G. Wu, Benjamin Kwok, José C. Clemente, Yonghua Li +13 more

Subtracting the background: Reducing cell-free DNA’s confounding effects on Mycobacterium tuberculosis quantitation and the sputum microbiome

medRxiv(2024)10.1101/2024.03.27.24304911

N/A

0DataRank · unranked

0 citations

Rouxjeane Venter, Francesc Codony, Gemma Agustí, Natasha Kitchin, Selisha Naidoo +8 more

Latent tuberculosis infection is associated with an enrichment of short chain fatty acid producing bacteria in the stool of women living with HIV

Research Square(2024)10.21203/rs.3.rs-4182285/v1

N/A

0DataRank · unranked

0 citations

Elouise E. Kroon, C Naidoo, Georgina Nyawo, Benjamin G. Wu, Selisha Naidoo +12 more

A novel aerosol collection method shows the cough aeromicrobiome of people with tuberculosis is phylogenetically distinct from respiratory tract specimens

Research Square(2024)10.21203/rs.3.rs-4106141/v1

N/A

0DataRank · unranked

0 citations

Georgina Nyawo, C Naidoo, Suventha Moodley, José C. Clemente, Stephanus T. Malherbe +5 more

Subtracting the background by reducing cell-free DNA’s confounding effects on Mycobacterium tuberculosis quantitation and the sputum microbiome

Scientific Reports(2024)10.1038/s41598-024-73497-3

N/A

0DataRank · unranked

0 citations

Rouxjeane Venter, Francesc Codony, Gemma Agustí, Natasha Kitchin, Selisha Naidoo +8 more

Short-chain fatty acids and their gut microbial pathways distinguish rheumatoid arthritis in discordant monozygotic twins

Annals of the Rheumatic Diseases(2025)10.1016/j.ard.2025.08.029

N/A

0DataRank · unranked

5 citations

Kevin Bu, Xinyuan Zhang, Weixi Chen, Ian Cunningham, Jeremy Sokolove +12 more

Nitrate reduction by salivary bacteria, glucose metabolism, and lifestyle

Journal of Oral Microbiology(2025)10.1080/20002297.2025.2489612

N/A

0DataRank · unranked

4 citations

Kai Guo, Jairelisse Morales Morales, Karina Ricart, Rakesh P. Patel, José C. Clemente +2 more

Gut IgA functionally interacts with systemic IgG to enhance antipneumococcal vaccine responses

Science Advances(2025)10.1126/sciadv.ado9455

N/A

0DataRank · unranked

5 citations

Emilie K. Grasset, Dean B. Matthews, Paul J. Maglione, Graham J. Britton, Helen Miller +21 more

Protocol design for the ACTIVATE clinical trial: Exposure to vaginal microbiome in cesarean-delivered infants at high risk for allergies

Journal of Allergy and Clinical Immunology Global(2025)10.1016/j.jacig.2025.100558

N/A

0DataRank · unranked

1 citations

Sharon A. Chung, Lisa M. Wheatley, Audrey Plough, Joy Laurienzo Panza, Michelle L. Sever +6 more

Mediterranean and standard American diet consumption in psychosis and non-psychosis affective disorders groups: Symptoms and cognition

Schizophrenia Research(2025)10.1016/j.schres.2025.04.025

N/A

0DataRank · unranked

3 citations

Ezequiel Lafont, Christa A Akerele, Mharisi Bonner, Audrey Musselman, Eugene Ruby +9 more

Fungal Trans-kingdom Dynamics Linked to Responsiveness to Fecal Microbiota Transplantation (FMT) Therapy in Ulcerative Colitis

Cell Host & Microbe(2020)10.1016/j.chom.2020.03.006

N/A

0DataRank · unranked

175 citations

Sudarshan Paramsothy, Itai Doron, Alexa Semon, Nadeem O. Kaakoush, José C. Clemente +7 more

Immunoglobulin A Targets a Unique Subset of the Microbiota in Inflammatory Bowel Disease

Cell Host & Microbe(2020)10.1016/j.chom.2020.12.003

N/A

0DataRank · unranked

111 citations

Marcel R. de Zoete, Noah W. Palm, Yaro Laenen, R Bright, Meaghan Mallette +11 more

Defined microbiota transplant restores Th17/RORγt + regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1922189117

N/A

0DataRank · unranked

108 citations

Eduardo J. Contijoch, Matthew P. Spindler, Varun Aggarwala, Belgin Dogan, Gerold Bongers +16 more

Quality diet indexes and risk of hepatocellular carcinoma: Findings from the Singapore Chinese Health Study

International Journal of Cancer(2020)10.1002/ijc.33367

N/A

0DataRank · unranked

37 citations

Nithya Neelakantan, Tingting Geng, Renwei Wang, George Boon‐Bee Goh, José C. Clemente +7 more

Composite Score of Healthy Lifestyle Factors and Risk of Hepatocellular Carcinoma: Findings from a Prospective Cohort Study

Cancer Epidemiology Biomarkers & Prevention(2020)10.1158/1055-9965.epi-20-1201

N/A

0DataRank · unranked

33 citations

Jaideep Behari, George Boon‐Bee Goh, Renwei Wang, Aizhen Jin, Claire E. Thomas +5 more

José C. Clemente

Indexed papers

Top data-sharing exemplar

Papers