🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Rohit Singh

Duke University

ORCID: 0000-0002-4084-7340
Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions”.

D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions

Cell Systems(2021)10.1016/j.cels.2021.08.010
N/A
0DataRank · unranked
209 citations

Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities

Genome biology(2021)10.1186/s13059-021-02313-2
N/A
0DataRank · unranked
46 citations

Brian Hie, Ashwin Narayan, Bonnie Berger, Rohit Singh

Sequence-based prediction of protein-protein interactions: a structure-aware interpretable deep learning model

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.22.427866
N/A
0DataRank · unranked
30 citations

Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Deciphering the species-level structure of topologically associating domains

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.28.466333
N/A
0DataRank · unranked
16 citations

Bonnie Berger, Rohit Singh

Topsy-Turvy: integrating a global view into sequence-based PPI prediction

Bioinformatics(2022)10.1093/bioinformatics/btac258
N/A
0DataRank · unranked
94 citations

Kapil Devkota, Samuel Sledzieski, Bonnie Berger, Lenore Cowen, Rohit Singh

Adapting protein language models for rapid DTI prediction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.03.515084
N/A
0DataRank · unranked
12 citations

Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.18.512766
N/A
0DataRank · unranked
4 citations

Alexander P. Wu, Anish Mudide, Bonnie Berger, Rohit Singh

Contrasting drugs from decoys

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.03.515086
N/A
0DataRank · unranked
1 citations

Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Contrastive learning in protein language space predicts interactions between drugs and protein targets

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2220778120
N/A
0DataRank · unranked
190 citations

Samuel Sledzieski, Bryan D. Bryson, Lenore Cowen, Bonnie Berger, Rohit Singh

split-intein Gal4 provides intersectional genetic labeling that is repressible by Gal80

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2304730120
N/A
0DataRank · unranked
36 citations

Haojiang Luan, Jun Xu, Rohit Singh, Neha Joshi, Tanuj Thakkar +4 more

TT3D: Leveraging precomputed protein 3D sequence models to predict protein–protein interactions

Bioinformatics(2023)10.1093/bioinformatics/btad663
N/A
0DataRank · unranked
32 citations

Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger, Samuel Sledzieski

Transfer of knowledge from model organisms to evolutionarily distant non-model organisms: The coral Pocillopora damicornis membrane signaling receptome

PLoS ONE(2023)10.1371/journal.pone.0270965
N/A
0DataRank · unranked
10 citations

Nathanael Brenner, Samuel Sledzieski, Monsurat Olaosebikan, Liza M. Roger, Matthew Lynn-Goin +10 more

split-intein Gal4 provides intersectional genetic labeling that is fully repressible by Gal80

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.24.534001
N/A
0DataRank · unranked
1 citations

Haojiang Luan, Jun Xu, Rohit Singh, Neha Joshi, Tanuj Thakkar +4 more

Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors

Cell Systems(2024)10.1016/j.cels.2024.04.005
N/A
0DataRank · unranked
26 citations

Alexander P. Wu, Anish Mudide, Bonnie Berger, Rohit Singh

Topology-Driven Discovery of Transmembrane Protein S -Palmitoylation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.08.611865
N/A
0DataRank · unranked
0 citations

Jacob R. Egol, Sinan Ozbay, Rohit Singh, Purushothama Rao Tata, Michael T. Forrester

Topology-driven discovery of transmembrane protein S-palmitoylation

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.108259
N/A
0DataRank · unranked
6 citations

Jacob R. Egol, Sinan Ozbay, Farrah D Waddell, Rohit Singh, Purushothama Rao Tata +1 more

Unveiling causal regulatory mechanisms through cell-state parallax

Nature Communications(2025)10.1038/s41467-025-61337-5
N/A
0DataRank · unranked
5 citations

Rohit Singh, Christopher A. Walsh, Bonnie Berger, Alexander P. Wu

Iterative immunogen optimization to focus immune responses on a conserved, subdominant influenza hemagglutinin epitope

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.04.686334
N/A
0DataRank · unranked
0 citations

Akiko Watanabe, A. Brenda Kapingidza, Caitlin Harris, Elizabeth Van Itallie, Kapil Devkota +16 more