🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Joseph E. Wedekind

University of Rochester

ORCID: 0000-0002-4269-4229
Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors”.

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors

Journal of Biological Chemistry(2020)10.1074/jbc.ra120.015444
N/A
1.1DataRank · unranked
29 citations

Sachitanand M. Mali, Jermaine L. Jenkins, Rudi Fasan, Joseph E. Wedekind, Sai Shashank Chavali

Cyclic peptides with a distinct arginine-fork motif recognize the HIV trans-activation response RNA in vitro and in cells

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101390
N/A
0DataRank · unranked
17 citations

Sachitanand M. Mali, Rachel Bonn, Abhijith Saseendran Anitha, Ryan P. Bennett, Harold C. Smith +3 more

A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control

Nature Communications(2022)10.1038/s41467-021-27790-8
N/A
0DataRank · unranked
28 citations

Chapin E. Cavender, Maya E. Blau, Jermaine L. Jenkins, David H. Mathews, Joseph E. Wedekind +1 more

RNA target highlights in CASP15: Evaluation of predicted models by structure providers

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26550
N/A
0DataRank · unranked
53 citations

Ebbe Sloth Andersen, Janusz M. Bujnicki, Wah Chiu, Rhiju Das, Bingnan Luo +11 more

Structure and function analysis of a type III preQ1-I riboswitch from Escherichia coli reveals direct metabolite sensing by the Shine-Dalgarno sequence

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.105208
N/A
0DataRank · unranked
16 citations

Daniil Kiliushik, Jermaine L. Jenkins, Joseph E. Wedekind, Griffin M. Schroeder

A riboswitch separated from its ribosome-binding site still regulates translation

Nucleic Acids Research(2023)10.1093/nar/gkad056
N/A
0DataRank · unranked
12 citations

Olayinka Akinyemi, Jeffrey Malik, Caroline M. Focht, Elizabeth M. Pritchett, Cameron Baker +5 more

Full-Length NAD+-I Riboswitches Bind a Single Cofactor but Cannot Discriminate against Adenosine Triphosphate

Biochemistry(2023)10.1021/acs.biochem.3c00391
N/A
0DataRank · unranked
2 citations

Maya E. Blau, Jermaine L. Jenkins, Joseph E. Wedekind, Yoshita Srivastava

RNA target highlights in CASP15: Evaluation of predicted models by structure providers

(2023)10.22541/au.168487314.47726735/v1
N/A
0DataRank · unranked
2 citations

Ebbe Sloth Andersen, Janusz M. Bujnicki, Wah Chiu, Rhiju Das, Bingnan Luo +11 more

Cyclic peptides targeting the SARS-CoV-2 programmed ribosomal frameshifting RNA from a multiplexed phage display library

Chemical Science(2024)10.1039/d4sc04026k
N/A
0DataRank · unranked
9 citations

Rachel Bonn, Andrew S. Hong, Abhijith Saseendran Anitha, Jermaine L. Jenkins, Joseph E. Wedekind +2 more

Knotty is nice: Metabolite binding and RNA-mediated gene regulation by the preQ1 riboswitch family

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107951
N/A
0DataRank · unranked
5 citations

Coleman Goenner, Matthew Law, Griffin M. Schroeder, Yoshita Srivastava, Jermaine L. Jenkins +2 more

Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation

Nucleic Acids Research(2020)10.1093/nar/gkaa546
N/A
0DataRank · unranked
39 citations

Debapratim Dutta, Chapin E. Cavender, Jermaine L. Jenkins, Elizabeth M. Pritchett, Cameron Baker +4 more

Two riboswitch classes that share a common ligand-binding fold show major differences in the ability to accommodate mutations

Nucleic Acids Research(2024)10.1093/nar/gkae886
N/A
0DataRank · unranked
3 citations

Olayinka Akinyemi, Tiana C Rohe, Elizabeth M. Pritchett, Cameron Baker, Akshara Sharma +4 more