Markus Hafner

Also affiliated with Government of the United States of America, National Institute of Arthritis and Musculoskeletal and Skin Diseases

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Supplementary Table S2 from Mitochondrial Matrix Protease ClpP Agonists Inhibit Cancer Stem Cell Function in Breast Cancer Cells by Disrupting Mitochondrial Homeostasis

(2023)10.1158/2767-9764.22545575

Top 100%

0DataRank

Top 100%0 citations

Lídia Hernandez, Emily M.J. Fennell, Manjari Kundu, Donna Voeller, Raj Chari +12 more

Papers

Driven by 39 papers — median percentile 0. Top paper: “MicroRNA-221 and -222 modulate intestinal inflammatory Th17 cell response as negative feedback regulators downstream of interleukin-23”.

MicroRNA-221 and -222 modulate intestinal inflammatory Th17 cell response as negative feedback regulators downstream of interleukin-23

Immunity(2021)10.1016/j.immuni.2021.02.015

N/A

0.606DataRank · unranked

56 citations

Rachael L. Philips, Giuseppe Sciumè, Franziska Petermann, Françoise Meylan, Hiroyuki Nagashima +13 more

MATRIN3 deficiency triggers autoinflammation via cGAS-STING activation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.01.587645

N/A

0.292DataRank · unranked

6 citations

Ahsan Polash, Masataka Suzawa, Bryan Chim, Skyler Kuhn, Sabrina Sultana +8 more

Proximity‐CLIP and Expedited Non‐Radioactive Library Preparation of Small RNA Footprints for Next‐Generation Sequencing

Current Protocols in Molecular Biology(2020)10.1002/cpmb.120

N/A

0DataRank · unranked

6 citations

Daniel Benhalevy, Markus Hafner, Dimitrios G. Anastasakis

Proximity-CLIP Provides a Snapshot of Protein-Occupied RNA Elements at Subcellular Resolution and Transcriptome-Wide Scale

Methods in molecular biology(2020)10.1007/978-1-0716-0712-1_17

N/A

0DataRank · unranked

6 citations

Markus Hafner, Daniel Benhalevy

The p53-induced RNA-binding protein ZMAT3 is a splicing regulator that inhibits the splicing of oncogenic CD44 variants in colorectal carcinoma

Genes & Development(2020)10.1101/gad.342634.120

N/A

0DataRank · unranked

70 citations

Dimitrios G. Anastasakis, Duncan Claypool, Lőrinc Sándor Pongor, Xiao Ling Li, Ioannis Grammatikakis +7 more

Post-transcriptional regulation of human endogenous retroviruses by RNA-Binding Motif Protein 4, RBM4

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.30.017111

N/A

0DataRank · unranked

0 citations

Bryan Chim, Madeline Wong, Andre Rastegar, Kent Barbian, Craig Martens +3 more

Multiple Capsid Protein Binding Sites Mediate Selective Packaging of the Alphavirus Genomic RNA

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.20.212746

N/A

0DataRank · unranked

0 citations

Dimitrios G. Anastasakis, Markus Hafner, Margaret Kielian, Rebecca S. Brown

CLIP and complementary methods

Nature Reviews Methods Primers(2021)10.1038/s43586-021-00018-1

N/A

0DataRank · unranked

379 citations

Maria Katsantoni, Tino Köster, James Marks, Joyita Mukherjee, Dorothee Staiger +3 more

Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection

Cell(2021)10.1016/j.cell.2021.04.012

N/A

0DataRank · unranked

208 citations

Dimitrios G. Anastasakis, Joseph Rodriguez, Murali Palangat, Prabhakar R. Gudla, George Zaki +6 more

Balancing of mitochondrial translation through METTL8-mediated m3C modification of mitochondrial tRNAs

Molecular Cell(2021)10.1016/j.molcel.2021.10.018

N/A

0DataRank · unranked

95 citations

James Marks, Virginie Marchand, Astrid Bruckmann, Christopher A. Powell, Markus Reichold +11 more

RNA Externalized by Neutrophil Extracellular Traps Promotes Inflammatory Pathways in Endothelial Cells

Arthritis & Rheumatology(2021)10.1002/art.41796

N/A

0DataRank · unranked

62 citations

Xinghao Wang, Philip M. Carlucci, Jose Jiram Torres‐Ruiz, Jorge Romo‐Tena, Hong‐Wei Sun +3 more

PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites

Methods in molecular biology(2021)10.1007/978-1-0716-1851-6_9

N/A

0DataRank · unranked

18 citations

Sudhir Manickavel, Markus Hafner, Charles Danan

Mitochondrial Matrix Protease ClpP Agonists Inhibit Cancer Stem Cell Function in Breast Cancer Cells by Disrupting Mitochondrial Homeostasis

Cancer Research Communications(2022)10.1158/2767-9764.crc-22-0142

N/A

0DataRank · unranked

31 citations

Lídia Hernandez, Emily M.J. Fennell, Manjari Kundu, Donna Voeller, Raj Chari +12 more

MicroRNA 3928 Suppresses Glioblastoma through Downregulation of Several Oncogenes and Upregulation of p53

International Journal of Molecular Sciences(2022)10.3390/ijms23073930

N/A

0DataRank · unranked

19 citations

Ying Zhang, Rossymar Rivera Colόn, Shelby Cain, Myron Gibert, Collin Dube +3 more

HNRNPK is retained in the cytoplasm by Keratin 19 to stabilize target mRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.24.477557

N/A

0DataRank · unranked

1 citations

Dimitrios G. Anastasakis, Amirhossein Manzourolajdad, Pooja Sharma, Xiantao Wang, Alexis Jacob +6 more

Mitochondrial Matrix Protease ClpP Agonists inhibit Cancer Stem Cell Function in Breast Cancer Cells by Disrupting Mitochondrial Homeostasis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.18.484947

N/A

0DataRank · unranked

0 citations

Lídia Hernandez, Emily M.J. Fennell, Donna Voeller, Raj Chari, Sam Gilbert +7 more

Nuclear PKM2 promotes pre-mRNA processing by binding folded RNA G-quadruplexes

Research Square(2022)10.21203/rs.3.rs-1495021/v1

N/A

0DataRank · unranked

0 citations

Maria Apostolidi, Jesse Rinehart, Markus Hafner, Dimitrios G. Anastasakis

p38 MAPK and MKP-1 control the glycolytic program via the bifunctional glycolysis regulator PFKFB3 during sepsis

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.103043

N/A

0DataRank · unranked

37 citations

Justin M. Mormol, Evan D. Shelton, Parker R. Murphy, Bridget A. Bowman, Timothy J. Barley +7 more

The ubiquitin-specific protease USP36 SUMOylates EXOSC10 and promotes the nucleolar RNA exosome function in rRNA processing

Nucleic Acids Research(2023)10.1093/nar/gkad140

N/A

0DataRank · unranked

26 citations

Yanping Li, Roselyn S Dai, Jonathan C. Savage, Ujwal Shinde, John Klimek +7 more

Chemoproteomic capture of RNA binding activity in living cells

Nature Communications(2023)10.1038/s41467-023-41844-z

N/A

0DataRank · unranked

18 citations

Jeffrey W. Brulet, Xiantao Wang, Michael W. Founds, Adam H. Libby, Dina L. Bai +6 more

Matrin3 regulates mitotic spindle dynamics by controlling alternative splicing of CDC14B

Cell Reports(2023)10.1016/j.celrep.2023.112260

N/A

0DataRank · unranked

16 citations

Roshan L. Shrestha, Dimitrios G. Anastasakis, Lőrinc Sándor Pongor, Xiao Ling Li, Ioannis Grammatikakis +9 more

Keratin 19 binds and regulates cytoplasmic HNRNPK mRNA targets in triple-negative breast cancer

BMC Molecular and Cell Biology(2023)10.1186/s12860-023-00488-z

N/A

0DataRank · unranked

12 citations

Dimitrios G. Anastasakis, Amirhossein Manzourolajdad, Pooja Sharma, Xiantao Wang, Alexis Jacob +6 more

Analysis of RNA translation with a deep learning architecture provides new insight into translation control

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.08.548206

N/A

0DataRank · unranked

3 citations

Tiangen Chang, Chuyun Chen, Markus Hafner, Zefeng Wang, Xiaojuan Fan

Supplementary Table S2 from Mitochondrial Matrix Protease ClpP Agonists Inhibit Cancer Stem Cell Function in Breast Cancer Cells by Disrupting Mitochondrial Homeostasis

(2023)10.1158/2767-9764.22545575

Top 100%

0DataRank

Top 100%0 citations

Lídia Hernandez, Emily M.J. Fennell, Manjari Kundu, Donna Voeller, Raj Chari +12 more

The role of MATRIN3 (MATR3) in innate immune response

The Journal of Immunology(2023)10.4049/jimmunol.210.supp.160.23

N/A

0DataRank · unranked

0 citations

Bryan Chim, Masataka Suzawa, Nicholas Cutrona, Patrick Smith, Amir Foroushani +3 more

A comprehensive analysis of Transcribed Ultra Conserved Regions uncovers important regulatory functions of novel non-coding transcripts in gliomas.

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.12.557444

N/A

0DataRank · unranked

0 citations

Ying Zhang, Shekhar Saha, Guruprasad Varma Konduru, Pawel Marcinkiewicz, Collin Dube +16 more

Nuclear PKM2 binds pre-mRNA at folded G-quadruplexes and reveals their gene regulatory role

Molecular Cell(2024)10.1016/j.molcel.2024.07.025

N/A

0DataRank · unranked

18 citations

Maria Apostolidi, Khalid A. Garman, Ahsan Habib Polash, Mubarak Ishaq Umar, Qingcai Meng +8 more

Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing

RNA Biology(2024)10.1080/15476286.2024.2314846

N/A

0DataRank · unranked

13 citations

Myung Hyun Jo, Minseok Song, Ji Won Lee, Min Ji Shim, Kyungmin Kim +13 more

Viral hijacking of hnRNPH1 unveils a G-quadruplex-driven mechanism of stress control

Cell Host & Microbe(2024)10.1016/j.chom.2024.07.006

N/A

0DataRank · unranked

13 citations

Beate M. Kümmerer, Markus Hafner, Katrin Paeschke, Philipp Schult

Epigenetic repression of antiviral genes by SARS-CoV-2 NSP1

PLoS ONE(2024)10.1371/journal.pone.0297262

N/A

0DataRank · unranked

5 citations

Daniel Benhalevy, Nicolas Çuburu, Nihal Altan‐Bonnet, Markus Hafner, Dimitrios G. Anastasakis

Determining the off-target activity of antibiotics and novel translation initiation sites in mitochondria

eLife(2024)10.7554/elife.103699

N/A

0DataRank · unranked

4 citations

Emma Young, Markus Hafner, James Marks

Determining the off-target activity of antibiotics and novel translation initiation sites in mitochondria

eLife(2024)10.7554/elife.103699.1

N/A

0DataRank · unranked

3 citations

Emma Young, Markus Hafner, James Marks

A first comprehensive analysis of Transcribed Ultra Conserved Regions uncovers important regulatory functions of novel non-coding transcripts in gliomas.

Research Square(2024)10.21203/rs.3.rs-4164642/v1

N/A

0DataRank · unranked

0 citations

Myron Gibert, Ying Zhang, Shekhar Saha, Pawel Marcinkiewicz, Collin Dube +15 more

An ALS-associated TARDBP mutation drives cryptic exon inclusion and RNA dysregulation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.09.687455

N/A

0DataRank · unranked

3 citations

Meng Liu, Xiaojuan Fan, N.Y. Chin, Yue Xu, Jessica Suh +7 more

Dysregulation of U12-Type Splicing in Lupus Neutrophils

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.06.686965

N/A

0DataRank · unranked

1 citations

Binod Regmi, Carmelo Carmona‐Rivera, Yudong Liu, Xiantao Wang, Philip M. Carlucci +7 more

Discovery and therapeutic exploitation of Master Regulatory miRNAs in Glioblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.01.646663

N/A

0DataRank · unranked

0 citations

Ying Zhang, Myron Gibert, Collin Dube, Farina Hanif, Elizabeth Mulcahy +23 more

Rapid image deconvolution and multiview fusion for optical microscopy

Nature Biotechnology(2020)10.1038/s41587-020-0560-x

N/A

0DataRank · unranked

200 citations

Yue Li, Yijun Su, Talley J. Lambert, Damian Dalle Nogare, Mark W. Moyle +24 more

The MLLT3 YEATS domain is a dual reader of histone marks (H3K9/18/27ac/cr) and ncRNA (7SK), linking epigenetic and RNA signaling to regulate hematopoiesis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.01.673558

N/A

0DataRank · unranked

0 citations

Ashish Kabra, Nicholas J. Achille, Emmalee R. Adelman, Dimitrios G. Anastasakis, Felipe Beckedorff +10 more

Multiple capsid protein binding sites mediate selective packaging of the alphavirus genomic RNA

Nature Communications(2020)10.1038/s41467-020-18447-z

N/A

0DataRank · unranked

53 citations

Dimitrios G. Anastasakis, Markus Hafner, Margaret Kielian, Rebecca S. Brown

Markus Hafner

Indexed papers

Top data-sharing exemplar

Papers