Matthew Zimmerman

MedicineBiochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 43 papers. Top paper: “TBAJ-876, a 3,5-Dialkoxypyridine Analogue of Bedaquiline, Is Active against Mycobacterium abscessus”.

TBAJ-876, a 3,5-Dialkoxypyridine Analogue of Bedaquiline, Is Active against Mycobacterium abscessus

Antimicrobial Agents and Chemotherapy(2020)10.1128/aac.02404-19

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0.624DataRank · unranked

63 citations

Uday S. Ganapathy, Matthew Zimmerman, Véronique Dartois, Martin Gengenbacher, Thomas Dick +1 more

Lesion Penetration and Activity Limit the Utility of Second-Line Injectable Agents in Pulmonary Tuberculosis

Antimicrobial Agents and Chemotherapy(2021)10.1128/aac.00506-21

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0.533DataRank · unranked

34 citations

Jansy P. Sarathy, Ning Wang, Firat Kaya, Matthew Zimmerman, Natasha Strydom +9 more

Evolution of Small Molecule Inhibitors of Mycobacterium tuberculosis Menaquinone Biosynthesis

Journal of Medicinal Chemistry(2025)10.1021/acs.jmedchem.4c03156

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0.241DataRank · unranked

4 citations

Quan Jiang, Shaogang Li, Elissa Ocke, Kholiswa Tsotetsi, Paridhi Sukheja +17 more

Activity of Tricyclic Pyrrolopyrimidine Gyrase B Inhibitor against Mycobacterium abscessus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.16.492225

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0.165DataRank · unranked

2 citations

Dereje A. Negatu, Abdellatif El Marrouni, Randy R. Miller, Christopher W. Boyce, Nicholas Murgolo +7 more

Piperidine-4-Carboxamides Target DNA Gyrase in Mycobacterium abscessus

Antimicrobial Agents and Chemotherapy(2021)10.1128/aac.00676-21

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0DataRank · unranked

29 citations

Andreas Beuchel, Abdeldjalil Madani, Nadine Álvarez, Chao Chen, Wassihun Wedajo Aragaw +7 more

Therapeutic Potential of Fosmanogepix (APX001) for Intra-abdominal Candidiasis: from Lesion Penetration to Efficacy in a Mouse Model

Antimicrobial Agents and Chemotherapy(2021)10.1128/aac.02476-20

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21 citations

Ning Wang, Claire L. Carter, Matthew Zimmerman, Véronique Dartois, Karen Joy Shaw +3 more

Random Forest Model Prediction of Compound Oral Exposure in the Mouse

ACS Pharmacology & Translational Science(2021)10.1021/acsptsci.0c00197

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0DataRank · unranked

18 citations

Han Wang, Matthew Zimmerman, Marc d. Paradis, Joel S. Freundlich, Haseeb Mughal

On-Slide Heat Sterilization Enables Mass Spectrometry Imaging of Tissue Infected with High-Threat Pathogens Outside of Biocontainment: A Study Directed at Mycobacterium tuberculosis

Journal of the American Society for Mass Spectrometry(2021)10.1021/jasms.1c00205

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0DataRank · unranked

9 citations

Jansy P. Sarathy, Matthew Zimmerman, Firat Kaya, Han Wang, Véronique Dartois +2 more

Structure, in Vivo Detection and Anti-Bacterial Activity of Metabolites of SQ109, an Anti-Infective Drug Candidate

ChemRxiv(2021)10.26434/chemrxiv.14669118

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0DataRank · unranked

2 citations

Matthew Zimmerman, Nadine Álvarez, Jansy P. Sarathy, Véronique Dartois, Carol A. Nacy +2 more

Structure, in Vivo Detection and Anti-Bacterial Activity of Metabolites of SQ109, an Anti-Infective Drug Candidate

ChemRxiv(2021)10.26434/chemrxiv.14669118.v1

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0DataRank · unranked

1 citations

Matthew Zimmerman, Nadine Álvarez, Jansy P. Sarathy, Véronique Dartois, Carol A. Nacy +2 more

A naturally inspired antibiotic to target multidrug-resistant pathogens

Nature(2022)10.1038/s41586-021-04264-x

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0DataRank · unranked

231 citations

Bimal Koirala, Yözen Hernández, Matthew Zimmerman, Steven Park, David S. Perlin +2 more

Bioinformatic prospecting and synthesis of a bifunctional lipopeptide antibiotic that evades resistance

Science(2022)10.1126/science.abn4213

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0DataRank · unranked

122 citations

Bimal Koirala, Yözen Hernández, Matthew Zimmerman, Sean F. Brady, Zongqiang Wang

Therapeutic efficacy of antimalarial drugs targeting DosRS signaling in Mycobacterium abscessus

Science Translational Medicine(2022)10.1126/scitranslmed.abj3860

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0DataRank · unranked

35 citations

Deepshikha Verma, Wěi Li, Charlotte Avanzi, Crystal J. Wiersma, John T. Williams +21 more

A Rabbit Model to Study Antibiotic Penetration at the Site of Infection for Nontuberculous Mycobacterial Lung Disease: Macrolide Case Study

Antimicrobial Agents and Chemotherapy(2022)10.1128/aac.02212-21

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0DataRank · unranked

21 citations

Jacqueline P. Ernest, Katherine LoMauro, Martin Gengenbacher, Abdeldjalil Madani, Wassihun Wedajo Aragaw +15 more

Mycobacterium tuberculosis DprE1 Inhibitor OPC-167832 Is Active against Mycobacterium abscessus In Vitro

Antimicrobial Agents and Chemotherapy(2022)10.1128/aac.01237-22

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0DataRank · unranked

17 citations

Matthew Zimmerman, Martin Gengenbacher, Véronique Dartois, Thomas Dick, Jickky Palmae Sarathy

Synthesis and biological evaluation of orally active prodrugs and analogs of para-aminosalicylic acid (PAS)

European Journal of Medicinal Chemistry(2022)10.1016/j.ejmech.2022.114201

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0DataRank · unranked

14 citations

Michael D. Howe, Matthew Zimmerman, Helena I. Boshoff, Sachin Sharma, Brianna Remache +6 more

A Novel Oral GyrB/ParE Dual Binding Inhibitor Effective against Multidrug-Resistant Neisseria gonorrhoeae and Other High-Threat Pathogens

Antimicrobial Agents and Chemotherapy(2022)10.1128/aac.00414-22

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0DataRank · unranked

10 citations

Riccardo Russo, Landon Westfall, Riju Shrestha, Matthew Zimmerman, Véronique Dartois +12 more

Activity of Tricyclic Pyrrolopyrimidine Gyrase B Inhibitor against Mycobacterium abscessus

Antimicrobial Agents and Chemotherapy(2022)10.1128/aac.00669-22

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0DataRank · unranked

10 citations

Dereje A. Negatu, Abdellatif El Marrouni, Randy R. Miller, Christopher W. Boyce, Nicholas Murgolo +7 more

Spatial quantitation of antibiotics in bone tissue compartments by laser-capture microdissection coupled with UHPLC-tandem mass spectrometry

Analytical and Bioanalytical Chemistry(2022)10.1007/s00216-022-04257-3

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0DataRank · unranked

3 citations

Matthew Zimmerman, Rosleine Antilus-Sainte, Martin Gengenbacher, Claire L. Carter, Véronique Dartois +1 more

Mycobacterium tuberculosis DprE1 inhibitor OPC-167832 is active against Mycobacterium abscessus in vitro

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.14.508059

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0DataRank · unranked

1 citations

Matthew Zimmerman, Martin Gengenbacher, Véronique Dartois, Thomas Dick, Jickky Palmae Sarathy

A novel oral GyrB/ParE dual binding inhibitor effective against multidrug resistant Neisseria gonorrhoeae and other high-threat pathogens

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.23.485573

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0DataRank · unranked

0 citations

Riccardo Russo, Landon Westfall, Riju Shrestha, Matthew Zimmerman, Véronique Dartois +12 more

Strongly bactericidal all-oral β-lactam combinations for the treatment of Mycobacterium abscessus lung disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.07.495238

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0DataRank · unranked

0 citations

Matthew Zimmerman, Véronique Dartois, Thomas Dick, Dereje A. Negatu

Macrophage internalization creates a multidrug-tolerant fungal persister reservoir and facilitates the emergence of drug resistance

Nature Communications(2023)10.1038/s41467-023-36882-6

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0DataRank · unranked

57 citations

Farnaz Daneshnia, Nathaly Cabrera, Suyapa Penalva-Lopez, Jansy P. Sarathy, Matthew Zimmerman +3 more

Lung microenvironments harbor Mycobacterium tuberculosis phenotypes with distinct treatment responses

Antimicrobial Agents and Chemotherapy(2023)10.1128/aac.00284-23

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0DataRank · unranked

34 citations

Jackie P. Ernest, Christian Dide-Agossou, Allison Bauman, Michelle E. Ramey, Karen Rossmassler +12 more

Activity of Oral Tebipenem-Avibactam in a Mouse Model of Mycobacterium abscessus Lung Infection

Antimicrobial Agents and Chemotherapy(2023)10.1128/aac.01459-22

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0DataRank · unranked

20 citations

Rubén González del Río, Mónica Cacho, David Barros-Aguirre, Joël Lelièvre, Joaquín Rullás +7 more

Investigation into the Mechanism of Action of the Tuberculosis Drug Candidate SQ109 and Its Metabolites and Analogues in Mycobacteria

Journal of Medicinal Chemistry(2023)10.1021/acs.jmedchem.3c00398

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0DataRank · unranked

14 citations

Ben Mazurek, Ji-Hee Ko, Pujun Xie, Chikako Barnes, Christine Varvitsiotis +13 more

Development of an Engineered Mycobacterium tuberculosis Strain for a Safe and Effective Tuberculosis Human Challenge Model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.19.567569

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0DataRank · unranked

5 citations

Hong-Wei Su, Joshua B. Wallach, Jeffrey C. Wagner, Benjamin J. Braunecker, Michelle Gardner +19 more

Normalizing granuloma vasculature and matrix improves drug delivery and reduces bacterial burden in tuberculosis-infected rabbits

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2321336121

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0DataRank · unranked

22 citations

Laura E. Via, Véronique Dartois, Danielle M. Weiner, Matthew Zimmerman, Firat Kaya +13 more

Commensal antimicrobial resistance mediates microbiome resilience to antibiotic disruption

Science Translational Medicine(2024)10.1126/scitranslmed.adi9711

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0DataRank · unranked

28 citations

Muxue Du, Abigail L. Zeamer, Benedikt M. Morzfeld, Tasia D. Kellogg, Firat Kaya +10 more

Spectinamide MBX-4888A exhibits favorable lesion and tissue distribution and promotes treatment shortening in advanced murine models of tuberculosis

Antimicrobial Agents and Chemotherapy(2024)10.1128/aac.00716-24

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0DataRank · unranked

5 citations

Jansy P. Sarathy, Firat Kaya, Lisa M. Massoudi, Michaël Scherman, Courtney Hastings +20 more

Rifabutin central nervous system concentrations in a rabbit model of tuberculous meningitis

Antimicrobial Agents and Chemotherapy(2024)10.1128/aac.00783-24

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0DataRank · unranked

4 citations

Rosleine Antilus-Sainte, Noha Abdelgawad, Narineh M. Odjourian, Melissa Cristaldo, Maureen Dougher +5 more

Virus-Shaped Mesoporous Silica Nanostars to Improve the Transport of Drugs across the Blood–Brain Barrier

ACS Applied Materials & Interfaces(2024)10.1021/acsami.4c06726

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0DataRank · unranked

4 citations

Ieva Ragaisyte, William Morton, Stefano Angioletti‐Uberti, Alizé Proust, Rocco D’Antuono +12 more

Engineered Mycobacterium tuberculosis triple-kill-switch strain provides controlled tuberculosis infection in animal models

Nature Microbiology(2025)10.1038/s41564-024-01913-5

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0DataRank · unranked

19 citations

Hong-Wei Su, Joshua B. Wallach, Jeffrey C. Wagner, Benjamin J. Braunecker, Michelle Gardner +20 more

Next-generation rifamycins for the treatment of mycobacterial infections

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2423842122

N/A

0DataRank · unranked

13 citations

Tian Lan, Uday S. Ganapathy, Chui Fann Wong, Jickky Palmae Sarathy, Diana C. Jimenez +24 more

Candidate transmission survival genome of Mycobacterium tuberculosis

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2425981122

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0DataRank · unranked

12 citations

Prabhat Ranjan Singh, Xiaoyi Hu, Landys Lopez Quezada, Adrián Jinich, Robin Jahn +13 more

Chemical genetic interactions elucidate pathways controlling tuberculosis antibiotic efficacy during infection

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2417525122

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0DataRank · unranked

3 citations

Eun‐Ik Koh, Megan K. Proulx, Charlotte J. Reames, Kadamba Papavinasasundaram, Kenan C. Murphy +4 more

Validating Conditionally Essential Targets: Discovery of the First Orally Effective Biotin Inhibitor against Mycobacterium Tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.24.678246

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0DataRank · unranked

2 citations

Joshua B. Wallach, Yahani P. Jayasinghe, Mark R. Sullivan, Julianna Proietto, Suyapa Rodriguez +14 more

Metabolically Stable Adenylation Inhibitors of Biotin Protein Ligase as Antibacterial Agents

Journal of Medicinal Chemistry(2025)10.1021/acs.jmedchem.4c02299

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0DataRank · unranked

0 citations

Curtis A. Engelhart, Joshua B. Wallach, Divya Tiwari, Peng Ge, Adhar C. Manna +14 more

Sterilizing activity of spectinamide MBX-4888A when replacing linezolid in the Nix- TB regimen in the relapsing BALB/c mouse model of tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.04.668403

N/A

0DataRank · unranked

0 citations

Michaël Scherman, Firat Kaya, Samanthi L. Waidyarachchi, Jiuyu Liu, Joel N. Rushefsky +9 more

Sterilizing activity of spectinamide MBX-4888A when replacing linezolid in the Nix-TB regimen in the relapsing BALB/c mouse model of tuberculosis

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.01183-25

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0DataRank · unranked

0 citations

Michaël Scherman, Firat Kaya, Samanthi L. Waidyarachchi, Jiuyu Liu, Joel N. Rushefsky +9 more

Potentiation of rifampin activity in a mouse model of tuberculosis by activation of host transcription factor EB

PLoS Pathogens(2020)10.1371/journal.ppat.1008567

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0DataRank · unranked

18 citations

Shashirekha Mundhra, Xiuju Jiang, Madeleine Wood, Daniel Pfau, Elaina Weber +16 more

Alterations of human skin microbiome and expansion of antimicrobial resistance after systemic antibiotics

Science Translational Medicine(2021)10.1126/scitranslmed.abd8077

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0DataRank · unranked

113 citations

Catriona P. Harkins, Nicole H. Schwardt, J. Portillo, NISC Comparative Sequencing Program, Matthew Zimmerman +10 more

Blocking Bacterial Naphthohydroquinone Oxidation and ADP-Ribosylation Improves Activity of Rifamycins against Mycobacterium abscessus

Antimicrobial Agents and Chemotherapy(2021)10.1128/aac.00978-21

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0DataRank · unranked

31 citations

Tian Lan, Philipp Krastel, Marissa Lindman, Matthew Zimmerman, Hsin‐Pin Ho +6 more