Paul T. Spellman

Brown University

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

32.0Author DataRank

Indexed papers

9in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Cell(2018)10.1016/j.cell.2018.02.052

Top 2%

8.1DataRank

Top 2%3980 citations

Katherine A. Hoadley, Laila M. Poisson, Alexander J. Lazar, Andrew D. Cherniack, Albert J. Kovatich +866 more

Papers

Driven by 55 papers — median percentile 96. Top paper: “An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics”.

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Cell(2018)10.1016/j.cell.2018.02.052

Top 2%

8.1DataRank

Top 2%3980 citations

Katherine A. Hoadley, Laila M. Poisson, Alexander J. Lazar, Andrew D. Cherniack, Albert J. Kovatich +866 more

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Cell(2021)10.1016/j.cell.2021.03.009

N/A

7.3DataRank · unranked

560 citations

Ignaty Leshchiner, Kerstin Haase, Maxime Tarabichi, Jeff Wintersinger, Amit G. Deshwar +64 more

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Cell(2018)10.1016/j.cell.2018.03.033

Top 3%

6.4DataRank

Top 3%447 citations

Matthew H. Bailey, Hoifung Poon, Vesteinn Thorsson, Antonio Colaprico, Andreas Bender +883 more

Submission of Microarray Data to Public Repositories

PLoS Biology(2004)10.1371/journal.pbio.0020317

N/A

6.1DataRank · unranked

122 citations

Ann-Christine Syvanen, Helen Causton, Steve Chervitz, Ron Edgar, Daniele Iudicone +15 more

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

Nature Biotechnology(2007)10.1038/nbt1347

Top 3%

6.0DataRank

Top 3%106 citations

Michael Miller, Ruedi Aebersold, Rolf Apweiler, On behalf of the MGED Society, Ann-Christine Syvanen +24 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

Cell Reports(2018)10.1016/j.celrep.2018.03.046

N/A

5.5DataRank · unranked

186 citations

Francisco Sanchez-Vega, Konnor C. La, Joshua Armenia, Walid K. Chatila, Augustin Luna +869 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Microarray Data Standards: An Open Letter

Environmental Health Perspectives(2004)10.1289/ehp.112-1277123

N/A

1.6DataRank · unranked

23 citations

Ann-Christine Syvanen, Helen Causton, Steve Chervitz, Ron Edgar, Daniele Iudicone +14 more

Integrated genomic analyses of ovarian carcinoma

Nature(2011)10.1038/nature10166

N/A

1.3DataRank · unranked

8094 citations

Debra Bell, Andrew Berchuck, Michael J. Birrer, Jeremy Chien, D. W. Cramer +268 more

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

Cancer Cell(2010)10.1016/j.ccr.2009.12.020

N/A

1.3DataRank · unranked

7682 citations

Katherine A. Hoadley, Elizabeth Purdom, Victoria Wang, Yuan Qi, Matthew D. Wilkerson +31 more

Oncogenic Signaling Pathways in The Cancer Genome Atlas

Cell(2018)10.1016/j.cell.2018.03.035

N/A

1.2DataRank · unranked

3322 citations

Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor C. La +891 more

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Cell Reports(2021)10.1016/j.celrep.2021.108707

N/A

1.1DataRank · unranked

32 citations

Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago C. Silva +77 more

Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies

npj Precision Oncology(2021)10.1038/s41698-021-00232-w

N/A

0.953DataRank · unranked

27 citations

Allen Li, Allison Creason, Courtney B. Betts, Jamie M. Keck, Brett Johnson +23 more

Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma

Proceedings of the National Academy of Sciences(2011)10.1073/pnas.1114669108

N/A

0.923DataRank · unranked

468 citations

Zachary Sanborn, Kelly L. Arnett, Laura J. Bayston, Wilson Liao, Charlotte M. Proby +33 more

FOXA1 overexpression mediates endocrine resistance by altering the ER transcriptome and IL-8 expression in ER-positive breast cancer

Proceedings of the National Academy of Sciences(2016)10.1073/pnas.1612835113

N/A

0.784DataRank · unranked

185 citations

Rinath Jeselsohn, Resel Pereira, Emporia F. Hollingsworth, Chad J. Creighton, Fugen Li +22 more

Causal interactions from proteomic profiles: Molecular data meet pathway knowledge

Patterns(2021)10.1016/j.patter.2021.100257

N/A

0.677DataRank · unranked

90 citations

Augustin Luna, Anil Korkut, Funda Durupınar, Metin Can Siper, Uğur Doğrusöz +9 more

Population screening shows risk of inherited cancer and familial hypercholesterolemia in Oregon

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.06.014

N/A

0.592DataRank · unranked

14 citations

Amiee Potter, Catherine C. Driscoll, Gregory Goh, John Letaw, Sarah McCabe +29 more

Large-scale Characterization of Drug Responses of Clinically Relevant Proteins in Cancer Cell Lines

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.186908

Top 34%

0.578DataRank

Top 34%10 citations

Jun Li, Mei‐Ju Chen, Zhenlin Ju, Nicole K. Nesser, Katie Johnson-Camacho +20 more

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems(2021)10.1016/j.cels.2021.05.021

N/A

0.564DataRank · unranked

42 citations

David Haan, Kristen D. Dang, Kami Chiotti, Matthew Inkman, Andrew Lamb +32 more

Epigenetic loss of heterogeneity from low to high grade localized prostate tumours

Nature Communications(2021)10.1038/s41467-021-27615-8

N/A

0.533DataRank · unranked

34 citations

Alex Chitsazan, Zeynep Sayar, George Thomas, Andrew J. Fields, Ryan Kopp +3 more

Prognostically relevant gene signatures of high-grade serous ovarian carcinoma

UNC Libraries(2020)10.17615/c9kk-d491

N/A

0.517DataRank · unranked

4 citations

Martin Köbel, Hailei Zhang, Rehan Akbani, Nianxiang Zhang, Katherine A. Hoadley +27 more

Multiplex imaging of localized prostate tumors reveals altered spatial organization of AR-positive cells in the microenvironment

iScience(2024)10.1016/j.isci.2024.110668

N/A

0.426DataRank · unranked

11 citations

Zeynep Sayar, Guillaume Thibault, Erik A. Burlingame, Marigold Kuykendall, Jennifer Eng +12 more

Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction

Nature Biotechnology(2024)10.1038/s41587-024-02250-y

Top 46%

0.396DataRank

Top 46%13 citations

Maxime Tarabichi, Alex Buchanan, Shadrielle M. G. Espiritu, Hongjiu Zhang, Kaiyi Zhu +83 more

Plasma Lipidomic Patterns in Patients with Symptomatic Coronary Microvascular Dysfunction

Metabolites(2021)10.3390/metabo11100648

N/A

0.330DataRank · unranked

8 citations

Brian P. Davidson, Zifeng Song, Claudia S. Maier, Jessica Minnier, Jan F. Stevens +12 more

Supervised learning of high-confidence phenotypic subpopulations from single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.23.533712

N/A

0.324DataRank · unranked

6 citations

Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du +9 more

Novel recruitment approaches and operational results for a statewide population Cohort for cancer research: The Healthy Oregon Project

Journal of Clinical and Translational Science(2024)10.1017/cts.2024.9

N/A

0.241DataRank · unranked

4 citations

Autumn Shafer, Katie Johnson-Camacho, Andrew C. Adey, Pavana Anur, Kim A. Brown +12 more

Multi-omics analysis of serial samples from metastatic TNBC patients on PARP inhibitor monotherapy provide insight into rational PARP inhibitor therapy combinations

medRxiv(2020)10.1101/2020.07.25.20146431

N/A

0.208DataRank · unranked

3 citations

Allen Li, Allison Creason, Courtney B. Betts, Jamie M. Keck, Brett Johnson +23 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Phenotype-guided subpopulation identification from single-cell sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.05.137240

N/A

0.104DataRank · unranked

1 citations

Xiangnan Guan, Amy E. Moran, David Z. Qian, Pepper Schedin, Andrew C. Adey +3 more

Reviewer #2 (Public Review): ASAR lncRNAs control DNA replication timing through interactions with multiple hnRNP/RNA binding proteins

(2024)10.7554/elife.95898.1.sa0

N/A

0DataRank · unranked

0 citations

Michael B. Heskett, Leslie G. Smith, Paul T. Spellman, Phillip A. Yates, Mathew J. Thayer

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components

Modern Pathology(2020)10.1038/s41379-019-0446-y

N/A

0DataRank · unranked

35 citations

John Z. Sanborn, Christopher Boniface, Benjamin Goode, Jocelyn Chapman, Karuna Garg +7 more

The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma

UNC Libraries(2020)10.17615/bd0j-6b91

N/A

0DataRank · unranked

0 citations

Kristen M. Leraas, Angela B. Smith, Michael J. Seiler, A. B. Clarke, Mark A. Jensen +95 more

Inferring causal molecular networks: empirical assessment through a community-based effort

UNC Libraries(2020)10.17615/j5nb-5n89

N/A

0DataRank · unranked

0 citations

Steven M. Hill, Daoud Meerzaman, Venkateshan Kannan, Bahman Afsari, Takeshi Hase +95 more

Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin

UNC Libraries(2020)10.17615/3e2x-wy62

N/A

0DataRank · unranked

0 citations

David A. Wheeler, Zhong Chen, Lynda Chin, Todd Pihl, Tai Hsien Ou Yang +95 more

An integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR and NF1

UNC Libraries(2020)10.17615/qy3p-zp42

N/A

0DataRank · unranked

0 citations

Richard K. Wilson, Katherine A. Hoadley, Gad Getz, Heidi S. Feiler, Jann N. Sarkaria +28 more

Integrated Analyses of microRNAs Demonstrate Their Widespread Influence on Gene Expression in High-Grade Serous Ovarian Carcinoma

UNC Libraries(2020)10.17615/hr2a-ez20

Top 100%

0DataRank

Top 100%0 citations

Richard A. Gibbs, Nikolaus Schultz, Chris Sander, Parminder K. Mankoo, Ying Du +14 more

Proliferative polyploid cells give rise to tumors via ploidy reduction

Nature Communications(2021)10.1038/s41467-021-20916-y

N/A

0DataRank · unranked

94 citations

Leslie Wakefield, A. Mack Peters, Myron Peto, Paul T. Spellman, Markus Grompe +1 more

The impact of tumor epithelial and microenvironmental heterogeneity on treatment responses in HER2+ breast cancer

JCI Insight(2021)10.1172/jci.insight.147617

N/A

0DataRank · unranked

42 citations

Shayna Stein, Otto Metzger, Jennifer Eng, Natalie L. Kingston, Nicholas W. Harper +18 more

Differential Allelic Expression among Long Non-Coding RNAs

Non-Coding RNA(2021)10.3390/ncrna7040066

N/A

0DataRank · unranked

5 citations

Paul T. Spellman, Mathew J. Thayer, Michael B. Heskett

Phenotype-guided subpopulation identification from single-cell sequencing data

Research Square(2021)10.21203/rs.3.rs-493014/v1

N/A

0DataRank · unranked

2 citations

Xiangnan Guan, Amy E. Moran, David Z. Qian, Pepper Schedin, Mu‐Shui Dai +6 more

Single-cell analysis of localized low- and high-grade prostate cancers

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.16.440238

N/A

0DataRank · unranked

1 citations

Alex Chitsazan, Zeynep Sayar, George Thomas, Andrew T. Fields, Ryan Kopp +3 more

Epigenetic control of chromosome-associated lncRNA genes essential for replication and stability

Nature Communications(2022)10.1038/s41467-022-34099-7

N/A

0DataRank · unranked

32 citations

Athanasios E Vouzas, Leslie G. Smith, Phillip A. Yates, Christopher Boniface, Eric E. Bouhassira +4 more

ASAR lncRNAs control DNA replication timing through interactions with multiple hnRNP/RNA binding proteins

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.04.494840

N/A

0DataRank · unranked

2 citations

Michael B. Heskett, Leslie G. Smith, Paul T. Spellman, Phillip A. Yates, Mathew J. Thayer

An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.30.486449

N/A

0DataRank · unranked

0 citations

Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar +8 more

Epigenetic Control of Hundreds of Chromosome-Associated lncRNA Genes Essential for Replication and Stability

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.25.489405

N/A

0DataRank · unranked

0 citations

Athanasios E Vouzas, Leslie Smith, Phillip A. Yates, Christopher Boniface, Eric E. Bouhassira +4 more

An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences

Research Square(2023)10.21203/rs.3.rs-2140339/v1

N/A

0DataRank · unranked

0 citations

Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar +8 more

Computational modeling of methylation impact of AML drivers reveals new pathways and refines AML risk-stratification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.17.541249

N/A

0DataRank · unranked

0 citations

Jeffrey Tyner, Emek Demir, Brian Druker, Paul T. Spellman, Burcu Gurun

Multiplex imaging of localized prostate tumors reveals changes in mast cell type composition and spatial organization of AR-positive cells in the tumor microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.18.553854

N/A

0DataRank · unranked

0 citations

Zeynep Sayar, Guillaume Thibault, Erik A. Burlingame, Jennifer Eng, Alex Chitsazan +10 more

Reviewer #1 (Public Review): ASAR lncRNAs control DNA replication timing through interactions with multiple hnRNP/RNA binding proteins

(2024)10.7554/elife.95898.2.sa1

N/A

0DataRank · unranked

0 citations

Michael B. Heskett, Leslie G. Smith, Paul T. Spellman, Phillip A. Yates, Mathew J. Thayer

Cell free RNA detection of pancreatic cancer in pre diagnostic high risk and symptomatic patients

Nature Communications(2025)10.1038/s41467-025-62685-y

N/A

0DataRank · unranked

8 citations

Elias Spiliotopoulos, Rowan Callahan, C. Ward Kirschbaum, C. Bailey, Hyun Ji Kim +10 more

Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

STAR Protocols(2025)10.1016/j.xpro.2025.103681

N/A

0DataRank · unranked

0 citations

Victor H Apolonio, Vinicius S Chagas, Christopher K. Wong, Jordan Lee, Christina Yau +61 more

Protocol for obtaining cancer type and subtype predictions using subSCOPE

STAR Protocols(2025)10.1016/j.xpro.2025.103705

N/A

0DataRank · unranked

0 citations

A. Gordon Robertson, Kyle Ellrott, Christopher K. Wong, Jordan Lee, Christina Yau +54 more

Autosomal Allelic Inactivation: Variable Replication and Dosage Sensitivity

eLife(2025)10.1101/2025.08.13.670061

N/A

0DataRank · unranked

0 citations

Athanasios E Vouzas, Brian Johnstone, Krister Freese, Phil Yates, Philip F. Copenhaver +4 more

Paul T. Spellman

Indexed papers

Top data-sharing exemplar

Papers