Chao Cheng

Also affiliated with Baylor College of Medicine, Houston Institute for Clinical Research, The First Affiliated Hospital, Sun Yat-sen University, Southeast University

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

24.3Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A cis-regulatory map of the Drosophila genome

Nature(2011)10.1038/nature09990

Top 3%

7.0DataRank

Top 3%543 citations

Christopher D. Brown, Christopher Aaron Bristow, Steven W. Miller, Ulrich Wagner, Yanxiao Zhang +40 more

Papers

Driven by 86 papers — median percentile 97. Top paper: “A cis-regulatory map of the Drosophila genome”.

A cis-regulatory map of the Drosophila genome

Nature(2011)10.1038/nature09990

Top 3%

7.0DataRank

Top 3%543 citations

Christopher D. Brown, Christopher Aaron Bristow, Steven W. Miller, Ulrich Wagner, Yanxiao Zhang +40 more

Modeling gene expression using chromatin features in various cellular contexts

Genome Biology(2012)10.1186/gb-2012-13-9-r53

Top 3%

6.9DataRank

Top 3%299 citations

Melissa C Greven, Anshul Kundaje, Sarah Djebali, James B Brown, Chao Cheng +6 more

Transcriptional and proteomic insights into the host response in fatal COVID-19 cases

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2018030117

N/A

6.5DataRank · unranked

214 citations

Yaobing Chen, Han Xia, Changli Wang, Chin Yee Tan, Xunhui Cai +21 more

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Genome Biology(2012)10.1186/gb-2012-13-9-r48

Top 3%

6.2DataRank

Top 3%269 citations

Chao Cheng, Nitin Bhardwaj, James B Brown, Jing Leng, Anshul Kundaje +7 more

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w

Top 5%

4.1DataRank

Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

Machine learning and genome annotation: a match meant to be?

Genome Biology(2013)10.1186/gb-2013-14-5-205

N/A

3.8DataRank · unranked

103 citations

Chao Cheng, Grigorios Georgolopoulos, Kevin Y. Yip

Architecture of the human regulatory network derived from ENCODE data

Nature(2012)10.1038/nature11245

N/A

1.1DataRank · unranked

1548 citations

Anshul Kundaje, Manoj Hariharan, Stephen G. Landt, Koon-Kiu Yan, Chao Cheng +58 more

Rare deleterious germline variants and risk of lung cancer

npj Precision Oncology(2021)10.1038/s41698-021-00146-7

N/A

1.0DataRank · unranked

34 citations

Jun Xia, James McKay, Spiridon Tsavachidis, Xiangjun Xiao, Margaret R. Spitz +42 more

Comparative analysis of regulatory information and circuits across distant species

Nature(2014)10.1038/nature13668

N/A

0.818DataRank · unranked

232 citations

Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng +40 more

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Genome Research(2012)10.1101/gr.136838.111

N/A

0.779DataRank · unranked

179 citations

Roger Alexander, Renqiang Min, Jing Leng, Kevin Y. Yip, Joel Rozowsky +17 more

UNSUPERVISED FEATURE CONSTRUCTION AND KNOWLEDGE EXTRACTION FROM GENOME-WIDE ASSAYS OF BREAST CANCER WITH DENOISING AUTOENCODERS

Biocomputing 2015(2014)10.1142/9789814644730_0014

N/A

0.593DataRank · unranked

51 citations

MATTHEW UNG, Chao Cheng, Casey S. Greene, Jie Tan

Genome-wide interaction analysis identified low-frequency variants with sex disparity in lung cancer risk

Human Molecular Genetics(2022)10.1093/hmg/ddac030

N/A

0.395DataRank · unranked

7 citations

Xiangjun Xiao, Jianrong Li, Jinyoung Byun, Chao Cheng, Yohan Bossé +50 more

Discovering chromatin motifs using FAIRE sequencing and the human diploid genome

BMC Genomics(2013)10.1186/1471-2164-14-310

N/A

0.357DataRank · unranked

5 citations

Michael J Buck, Min-Hsuan Chen, Yun-Fan Chen, Hsin-Chi Lan, Jeremy JW Chen +3 more

Erythritol, Erythronate, and Cardiovascular Outcomes in Older Adults in the ARIC Study

JACC Advances(2025)10.1016/j.jacadv.2025.101605

N/A

0.321DataRank · unranked

7 citations

Bing Yu, Ron C. Hoogeveen, Caroline Sun, Chao Cheng, Sean M. Hartig +8 more

Extensive epigenomic dysregulation is a hallmark of homologous recombination deficiency in triple‐negative breast cancer

International Journal of Cancer(2024)10.1002/ijc.35274

N/A

0.315DataRank · unranked

6 citations

Lucas A. Salas, Jonathan D. Marotti, Nicole P. Jenkins, Chao Cheng, Todd W. Miller +3 more

Identifying high‐risk multiple myeloma patients: A novel approach using a clonal gene signature

International Journal of Cancer(2024)10.1002/ijc.35057

N/A

0.224DataRank · unranked

3 citations

Christiana Wang, Chao Cheng, Jianrong Li

Joint multi-omics discriminant analysis with consistent representation learning using PANDA

Research Square(2024)10.21203/rs.3.rs-4353037/v1

N/A

0.217DataRank · unranked

2 citations

Muhammad Aminu, Lingzhi Hong, Natalie I. Vokes, Stephanie Schmidt, Maliazurina B. Saad +15 more

Genome-wide interaction analysis identified low-frequency variants with sex disparity in lung cancer risk

Research Square(2021)10.21203/rs.3.rs-647012/v1

N/A

0.175DataRank · unranked

2 citations

Xiangjun Xiao, Jianrong Li, Jinyoung Byun, Chao Cheng, Yohan Bossé +50 more

Gene signatures characterizing driver mutations in lung squamous carcinoma are predictive of the progression of pre-cancer lesions

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.29.664792

N/A

0.104DataRank · unranked

1 citations

Venugopalareddy Mekala, Jianrong Li, Xiang Wang, Muhammad Aminu, Jia Wu +8 more

Tumor Cell Intrinsic And Extrinsic Features Predicts Prognosis In Estrogen Receptor Positive Breast Cancer

Research Square(2021)10.21203/rs.3.rs-829187/v1

N/A

0DataRank · unranked

0 citations

Evelien Schaafsma, Baoyi Zhang, Chao Cheng, Kevin Yao

Tumor cell intrinsic and extrinsic features predicts prognosis in estrogen receptor positive breast cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.29.462286

N/A

0DataRank · unranked

0 citations

Evelien Schaafsma, Baoyi Zhang, Chao Cheng, Kevin Yao

Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP-1 shapes 3D enhancer landscapes

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00880-x

N/A

0DataRank · unranked

121 citations

Yanding Zhao, Andrew McCray, William H. Hawk, Luke T. Deary, Nicholas W. Sugiarto +5 more

A lepidic gene signature predicts patient prognosis and sensitivity to immunotherapy in lung adenocarcinoma

Genome Medicine(2022)10.1186/s13073-021-01010-w

N/A

0DataRank · unranked

68 citations

Hyun‐Sung Lee, Bryan M. Burt, Jia Wu, Jianjun Zhang, Christopher I. Amos +2 more

VISTA Targeting of T-cell Quiescence and Myeloid Suppression Overcomes Adaptive Resistance

Cancer Immunology Research(2022)10.1158/2326-6066.cir-22-0116

N/A

0DataRank · unranked

49 citations

Walburga Croteau, Mohamed ElTanbouly, Elizabeth C. Nowak, Nicole C. Smits, Jie Deng +7 more

Predicting clinical outcomes of cancer patients with a p53 deficiency gene signature

Scientific Reports(2022)10.1038/s41598-022-05243-6

N/A

0DataRank · unranked

35 citations

Eric M. Takacs, Sandeep Kaur, Chao Cheng, Manabu Kurokawa, Evelien Schaafsma

The steroid hormone estriol (E3) regulates epigenetic programming of fetal mouse brain and reproductive tract

BMC Biology(2022)10.1186/s12915-022-01293-4

N/A

0DataRank · unranked

26 citations

Baoxia Gu, Géraldine Brichant, Jay Prakash Singh, Huan Yang, Hao Chang +9 more

A framework to predict the applicability of Oncotype DX, MammaPrint, and E2F4 gene signatures for improving breast cancer prognostic prediction

Scientific Reports(2022)10.1038/s41598-022-06230-7

N/A

0DataRank · unranked

12 citations

Chun-Yip Tong, Chao Cheng, Kevin Yao

Deep-Precognitive Diagnosis: Preventing Future Pandemics by Novel Disease Detection With Biologically-Inspired Conv-Fuzzy Network

IEEE Access(2022)10.1109/access.2022.3153059

N/A

0DataRank · unranked

11 citations

Rahul Upadhyay, Vinay Kumar, Chao Cheng, Jing Zhang, Tianyang Wang +2 more

A B‐Raf V600E gene signature for melanoma predicts prognosis and reveals sensitivity to targeted therapies

Cancer Medicine(2022)10.1002/cam4.4491

N/A

0DataRank · unranked

8 citations

Emily Zhou, Chao Cheng, Kevin Yao

Computational modeling of chromatin accessibility identified important epigenomic regulators

BMC Genomics(2022)10.1186/s12864-021-08234-5

N/A

0DataRank · unranked

3 citations

Yadong Dong, Hong Wei, Chongming Jiang, Kevin Yao, Chao Cheng +1 more

Genetic variants associated mRNA stability in lung

BMC Genomics(2022)10.1186/s12864-022-08405-y

N/A

0DataRank · unranked

5 citations

Mabel Tang, Yafang Li, Christopher I. Amos, Chao Cheng, Jiànróng Lǐ

Influence of T Cell-Mediated Immune Surveillance on Somatic Mutation Occurrences in Melanoma

Frontiers in Immunology(2022)10.3389/fimmu.2021.703821

N/A

0DataRank · unranked

2 citations

Evelien Schaafsma, Hong Wei, Yanding Zhao, Ken Zhu, Cheng‐Chi Chao +2 more

Tumor cell intrinsic and extrinsic features predict prognosis in estrogen receptor positive breast cancer

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009495

N/A

0DataRank · unranked

1 citations

Evelien Schaafsma, Baoyi Zhang, Chao Cheng, Kevin Yao

Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.22.504726

N/A

0DataRank · unranked

0 citations

Yasmin Kamal, Owen M. Williams, Chenyang Li, Fred Kolling, Heidi W. Trask +5 more

Predicting benefit from immune checkpoint inhibitors in patients with non-small-cell lung cancer by CT-based ensemble deep learning: a retrospective study

The Lancet Digital Health(2023)10.1016/s2589-7500(23)00082-1

N/A

0DataRank · unranked

110 citations

Lingzhi Hong, Muhammad Aminu, Natalie I. Vokes, Pingjun Chen, Morteza Salehjahromi +44 more

PD-L1 translocation to the plasma membrane enables tumor immune evasion through MIB2 ubiquitination

Journal of Clinical Investigation(2023)10.1172/jci160456

N/A

0DataRank · unranked

58 citations

Wei Li, Haidan Liu, Xu Wang, Cristian Coarfa, Chao Cheng +6 more

Immune Infiltration in Tumor and Adjacent Non-Neoplastic Regions Codetermines Patient Clinical Outcomes in Early-Stage Lung Cancer

Journal of Thoracic Oncology(2023)10.1016/j.jtho.2023.04.022

N/A

0DataRank · unranked

45 citations

Thinh T. Nguyen, Mabel Tang, Xinan Wang, Chongming Jiang, Yanhong Liu +7 more

Mosaic Chromosomal Alterations Are Associated With Increased Lung Cancer Risk: Insight From the INTEGRAL-ILCCO Cohort Analysis

Journal of Thoracic Oncology(2023)10.1016/j.jtho.2023.05.001

N/A

0DataRank · unranked

10 citations

Wei Hong, Yafang Li, Xiangjun Xiao, James McKay, Younghun Han +41 more

Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20

Life Science Alliance(2023)10.26508/lsa.202201683

N/A

0DataRank · unranked

6 citations

Yasmin Kamal, Owen M. Wilkins, Chenyang Li, Fred Kolling, Heidi W. Trask +5 more

Random Forest model reveals the interaction between N6-methyladenosine modifications and RNA-binding proteins

iScience(2023)10.1016/j.isci.2023.106250

N/A

0DataRank · unranked

6 citations

Yanding Zhao, Yi‐Lan Weng, Chao Cheng, Wei Hong

Reduced Racial Disparity as a Result of Survival Improvement in Prostate Cancer

Cancers(2023)10.3390/cancers15153977

N/A

0DataRank · unranked

5 citations

Jianrong Li, Mabel Tang, Chao Cheng, Baoyi Zhang

The ratio of intratumour to stromal infiltrating lymphocytes better predicts prognosis in breast cancer

Clinical and Translational Medicine(2023)10.1002/ctm2.1265

N/A

0DataRank · unranked

4 citations

Xiang Wang, Chao Cheng, Baoyi Zhang

TimiGP: An R package to depict the tumor microenvironment from bulk transcriptomics

STAR Protocols(2023)10.1016/j.xpro.2023.102742

N/A

0DataRank · unranked

3 citations

Jianjun Zhang, Chao Cheng, Chenyang Li

Methylation of nonessential genes in cutaneous melanoma – Rule Out hypothesis

Melanoma Research(2023)10.1097/cmr.0000000000000881

N/A

0DataRank · unranked

0 citations

Kathleen Conway, Sharon N. Edmiston, Eloise Parrish, Honglin Hao, Christopher I. Amos +15 more

Data from Chr20q Amplification Defines a Distinct Molecular Subtype of Microsatellite Stable Colorectal Cancer

(2023)10.1158/0008-5472.c.6513655.v1

N/A

0DataRank · unranked

0 citations

Kevin Yao, Emily Zhou, Lanjing Zhang, Chao Cheng, Baoyi Zhang

Data from Chr20q Amplification Defines a Distinct Molecular Subtype of Microsatellite Stable Colorectal Cancer

(2023)10.1158/0008-5472.c.6513655

N/A

0DataRank · unranked

0 citations

Kevin Yao, Emily Zhou, Lanjing Zhang, Chao Cheng, Baoyi Zhang

Supplementary Tables 1-8 from MYC Activity Inference Captures Diverse Mechanisms of Aberrant MYC Pathway Activation in Human Cancers

INDIGO (University of Illinois at Chicago)(2023)10.1158/1541-7786.22526001.v1

Top 100%

0DataRank

Top 100%0 citations

Yanding Zhao, Lanjing Zhang, Yong Li, Chao Cheng, Evelien Schaafsma

Racial and socioeconomic disparities in survival improvement of eight cancers

BJC Reports(2024)10.1038/s44276-024-00044-y

N/A

0DataRank · unranked

21 citations

Baoyi Zhang, Mabel Tang, William Peng, Christopher I. Amos, Chao Cheng +1 more

UBR5 promotes antiviral immunity by disengaging the transcriptional brake on RIG-I like receptors

Nature Communications(2024)10.1038/s41467-024-45141-1

N/A

0DataRank · unranked

15 citations

Tingting Geng, Andrew G. Harrison, Jason G. Cahoon, Xing Jian, Baihai Jiao +9 more

Tissue-resident memory T cell signatures from single-cell analysis associated with better melanoma prognosis

iScience(2024)10.1016/j.isci.2024.109277

N/A

0DataRank · unranked

15 citations

Cheng‐Chi Chao, Jianrong Li, Xin Ge, Aidan Shen, Vadim Jucaud +3 more

Advances in the Clinical Application of High-throughput Proteomics

Exploratory Research and Hypothesis in Medicine(2024)10.14218/erhm.2024.00006

N/A

0DataRank · unranked

14 citations

Fei Deng, Mary L. Disis, Chao Cheng, Lanjing Zhang, Miao Cui

A comprehensive meta-analysis of tissue resident memory T cells and their roles in shaping immune microenvironment and patient prognosis in non-small cell lung cancer

Frontiers in Immunology(2024)10.3389/fimmu.2024.1416751

N/A

0DataRank · unranked

10 citations

Aliesha Garrett, Cheng‐Chi Chao, Dongliang Liu, Chao Cheng, Zhaohui Wang +5 more

Integrative genomic and transcriptomic profiling of pulmonary sarcomatoid carcinoma identifies molecular subtypes associated with distinct immune features and clinical outcomes

Cancer Innovation(2024)10.1002/cai2.112

N/A

0DataRank · unranked

8 citations

Runzhe Chen, Yang Liu, Junya Fujimoto, Lingzhi Hong, Alexandre Reuben +20 more

Lung Cancer in Ever- and Never-Smokers: Findings from Multi-Population GWAS Studies

Cancer Epidemiology Biomarkers & Prevention(2024)10.1158/1055-9965.epi-23-0613

N/A

0DataRank · unranked

10 citations

Xiangjun Xiao, Jianrong Li, Younghun Han, Chao Cheng, Gail Fernandes +53 more

Clonal gene signatures predict prognosis in mesothelioma and lung adenocarcinoma

npj Precision Oncology(2024)10.1038/s41698-024-00531-y

N/A

0DataRank · unranked

7 citations

Bryan M. Burt, Hyun‐Sung Lee, Thinh T. Nguyen, Hee-Jin Jang, Claire Lee +5 more

Enhancing prognostic power in multiple myeloma using a plasma cell signature derived from single-cell RNA sequencing

Blood Cancer Journal(2024)10.1038/s41408-024-01024-8

N/A

0DataRank · unranked

7 citations

Shahram Arsang‐Jang, Yan Cheng, Fumou Sun, Anita D’Souza, Binod Dhakal +11 more

DeepCG: A cell graph model for predicting prognosis in lung adenocarcinoma

International Journal of Cancer(2024)10.1002/ijc.34901

N/A

0DataRank · unranked

3 citations

Chenyang Li, Jia Wu, Jiexin Zhang, Chao Cheng, Baoyi Zhang

Immune cell pair ratio captured by imaging mass cytometry has superior predictive value for prognosis of non‐small cell lung cancer than cell fraction and density

Cancer Communications(2024)10.1002/cac2.12540

N/A

0DataRank · unranked

2 citations

Chao Cheng, Jianrong Li

Heterogeneity and plasticity of the naïve CD4 + T cell compartment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.02.615602

N/A

0DataRank · unranked

1 citations

Evelien Schaafsma, Walburga Croteau, Mohamed ElTanbouly, Elizabeth C. Nowak, Chao Cheng +5 more

CoCo-ST: Comparing and Contrasting Spatial Transcriptomics data sets using graph contrastive learning

Research Square(2024)10.21203/rs.3.rs-4359834/v1

N/A

0DataRank · unranked

0 citations

Muhammad Aminu, Bo Zhu, Natalie I. Vokes, Hong Chen, Lingzhi Hong +18 more

Prognostic stratification in DLBCL patients with aberrant MYC gene

British Journal of Haematology(2024)10.1111/bjh.19699

N/A

0DataRank · unranked

0 citations

Vikram R. Shaw, Abi Parthasarathy, Yong Li, Christopher I. Amos, Chao Cheng +1 more

High-Penetrance Rare Variants Underlying Familial Lung Cancer Risk: Insights From Genetic Epidemiology of Lung Cancer Consortium

Journal of Thoracic Oncology(2025)10.1016/j.jtho.2025.12.004

N/A

0DataRank · unranked

3 citations

Yafang Li, Jinyoung Byun, Vikram R. Shaw, Claudio W. Pikielny, Bo Peng +29 more

Does Adiponectin Inform Cardiovascular Risk in Older Adults?

JACC Advances(2025)10.1016/j.jacadv.2025.101625

N/A

0DataRank · unranked

2 citations

Xiaoming Jia, Xu Lu, Chao Cheng, Chiadi E. Ndumele, Caroline Sun +11 more

Gene expression in tumor and adjacent normal tissues in lung adenocarcinoma subtypes

BMC Cancer(2025)10.1186/s12885-025-14496-z

N/A

0DataRank · unranked

2 citations

Ivan Gorlov, R. Taylor Ripley, Chao Cheng, Yafang Li, Xiaozhong Peng +9 more

Unravelling the distinct effects of VHL mutations and chromosome 3p loss in clear cell renal cell carcinoma: Implications for prognosis and treatment

Clinical and Translational Medicine(2025)10.1002/ctm2.70465

N/A

0DataRank · unranked

1 citations

Jiànróng Lǐ, Naail Raed Chowdhury, Lang Wu, Chao Cheng, Xiang Wang

GASPS: A Multi-Omics Framework for Defining Genomic Aberration-Driven Signatures and Predicting Patient Outcomes in Lung Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.21.671519

N/A

0DataRank · unranked

1 citations

Xiang Wang, Chenyang Li, R. Taylor Ripley, Jia Wu, Jianjun Zhang +3 more

Heterogeneity and plasticity of the naïve CD4+ T cell compartment

Research Square(2025)10.21203/rs.3.rs-5744327/v1

N/A

0DataRank · unranked

0 citations

Alia Sajani, Evelien Schaafsma, Walburga Croteau, Mohamed ElTanbouly, Elizabeth C. Nowak +5 more

Reply to: “Comments on the paper ‘Extensive epigenomic dysregulation is a hallmark of homologous recombination deficiency in triple‐negative breast cancer’ by Y. Chen et al.”

International Journal of Cancer(2025)10.1002/ijc.35434

N/A

0DataRank · unranked

0 citations

Lucas A. Salas, Jonathan D. Marotti, Nicole P. Jenkins, Chao Cheng, Todd W. Miller +3 more

Gene signatures characterizing driver mutations in lung squamous carcinoma are predictive of the progression of pre‐cancer lesions

International Journal of Cancer(2025)10.1002/ijc.70269

N/A

0DataRank · unranked

0 citations

Venugopalareddy Mekala, Jianrong Li, Xiang Wang, Muhammad Aminu, Jia Wu +8 more

VISTA is a checkpoint regulator for naïve T cell quiescence and peripheral tolerance

Science(2020)10.1126/science.aay0524

N/A

0DataRank · unranked

290 citations

Yanding Zhao, Elizabeth C. Nowak, Jiannan Li, Evelien Schaafsma, Isabelle Le Mercier +17 more

Multifactorial Deep Learning Reveals Pan-Cancer Genomic Tumor Clusters with Distinct Immunogenomic Landscape and Response to Immunotherapy

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-19-1744

N/A

0DataRank · unranked

70 citations

Jianjun Zhang, Jiayin Wang, Alexandre Reuben, Wei Xu, Xin Yi +23 more

VISTA Re-programs Macrophage Biology Through the Combined Regulation of Tolerance and Anti-inflammatory Pathways

Frontiers in Immunology(2020)10.3389/fimmu.2020.580187

N/A

0DataRank · unranked

52 citations

Evelien Schaafsma, Nicole C. Smits, Parth Shah, Chao Cheng, Christopher M. Burns +4 more

MYC Activity Inference Captures Diverse Mechanisms of Aberrant MYC Pathway Activation in Human Cancers

Molecular Cancer Research(2020)10.1158/1541-7786.mcr-20-0526

N/A

0DataRank · unranked

13 citations

Yanding Zhao, Lanjing Zhang, Yong Li, Chao Cheng, Evelien Schaafsma

Gene signatures associated with genomic aberrations predict prognosis in neuroblastoma

Cancer Communications(2020)10.1002/cac2.12016

N/A

0DataRank · unranked

15 citations

Chao Qin, Yanding Zhao, Lin Zou, Hui Zhao, Chao Cheng +1 more

Gene signature‐based prediction of triple‐negative breast cancer patient response to Neoadjuvant chemotherapy

Cancer Medicine(2020)10.1002/cam4.3284

N/A

0DataRank · unranked

36 citations

Evelien Schaafsma, Chao Cheng, Yanding Zhao

Pan-cancer systematic identification of lncRNAs associated with cancer prognosis

PeerJ(2020)10.7717/peerj.8797

N/A

0DataRank · unranked

3 citations

Evelien Schaafsma, Daniel Mattox, George L. Wang, Chao Cheng, MATTHEW UNG

Pan-cancer association of HLA gene expression with cancer prognosis and immunotherapy efficacy

British Journal of Cancer(2021)10.1038/s41416-021-01400-2

N/A

0DataRank · unranked

209 citations

Chloe M. Fugle, Xiaofeng Wang, Chao Cheng, Evelien Schaafsma

Resident memory CD8+ T cells in regional lymph nodes mediate immunity to metastatic melanoma

Immunity(2021)10.1016/j.immuni.2021.08.019

N/A

0DataRank · unranked

164 citations

Nikhil Khatwani, Jennifer L. Vella, Kathryn A. Lewis, Yanding Zhao, Jichang Han +19 more

Resident and circulating memory T cells persist for years in melanoma patients with durable responses to immunotherapy

Nature Cancer(2021)10.1038/s43018-021-00180-1

N/A

0DataRank · unranked

151 citations

Yanding Zhao, Keisuke Shirai, Aleksey Molodtsov, Fred Kolling, Jan L. Fisher +10 more

Impact of Oncotype DX testing on ER+ breast cancer treatment and survival in the first decade of use

Breast Cancer Research(2021)10.1186/s13058-021-01453-4

N/A

0DataRank · unranked

68 citations

Baoyi Zhang, Merit Schaafsma, Chun-Yip Tong, Lanjing Zhang, Chao Cheng +1 more

Cold and heterogeneous T cell repertoire is associated with copy number aberrations and loss of immune genes in small-cell lung cancer

Nature Communications(2021)10.1038/s41467-021-26821-8

N/A

0DataRank · unranked

52 citations

Runzhe Chen, Ying Jin, Jun Li, Xin Hu, Jiexin Zhang +40 more

VISTA: A Target to Manage the Innate Cytokine Storm

Frontiers in Immunology(2021)10.3389/fimmu.2020.595950

N/A

0DataRank · unranked

46 citations

Yanding Zhao, Evelien Schaafsma, Christopher M. Burns, Rodwell Mabaera, Chao Cheng +2 more

Clonal Hematopoiesis Mutations in Patients with Lung Cancer Are Associated with Lung Cancer Risk Factors

Cancer Research(2021)10.1158/0008-5472.can-21-1903

N/A

0DataRank · unranked

40 citations

Ang Li, Yanhong Liu, Xiangjun Xiao, David C. Christiani, Rayjean J. Hung +5 more

B cell infiltration is highly associated with prognosis and an immune-infiltrated tumor microenvironment in neuroblastoma

Journal of Cancer Metastasis and Treatment(2021)10.20517/2394-4722.2021.72

N/A

0DataRank · unranked

37 citations

Chongming Jiang, Chao Cheng, Evelien Schaafsma

Deep Learning Predicts EBV Status in Gastric Cancer Based on Spatial Patterns of Lymphocyte Infiltration

Cancers(2021)10.3390/cancers13236002

N/A

0DataRank · unranked

12 citations

Kevin Yao, Min Xu, Jia Wu, Chao Cheng, Baoyi Zhang

AutoEncoder-Based Computational Framework for Tumor Microenvironment Decomposition and Biomarker Identification in Metastatic Melanoma

Frontiers in Genetics(2021)10.3389/fgene.2021.665065

N/A

0DataRank · unranked

2 citations

Yadong Dong, Yongqi Sun, Chao Cheng, Yanding Zhao

Chao Cheng

Indexed papers

Top data-sharing exemplar

Papers