Zilong Li

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 11 papers. Top paper: “ANERGY TO SYNERGY-THE ENERGY FUELING THE RXCOVEA FRAMEWORK”.

ANERGY TO SYNERGY-THE ENERGY FUELING THE RXCOVEA FRAMEWORK

International Journal for Multiscale Computational Engineering(2020)10.1615/intjmultcompeng.2020035097

N/A

0DataRank · unranked

1 citations

Jantine A.C. Broek, Charles R. Cantor, Ashley J. Duits, Alfredo Ferro, Hillary W. Gao +9 more

Brownian dynamics simulations of mesoscale chromatin fibers

Biophysical Journal(2022)10.1016/j.bpj.2022.09.013

N/A

0DataRank · unranked

27 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Hi-BDiSCO: folding 3D mesoscale genome structures from Hi-C data using brownian dynamics

Nucleic Acids Research(2023)10.1093/nar/gkad1121

N/A

0DataRank · unranked

17 citations

Tamar Schlick, Zilong Li

Techniques for and challenges in reconstructing 3D genome structures from 2D chromosome conformation capture data

Current Opinion in Cell Biology(2023)10.1016/j.ceb.2023.102209

N/A

0DataRank · unranked

11 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Synthetic genomes unveil the effects of synonymous recoding

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.16.599206

N/A

0DataRank · unranked

20 citations

Anush Chiappino-Pepe, Bogdan Budnik, Maximilien Baas-Thomas, Regan Flynn, Shirui Yan +25 more

Compromised two-start zigzag chromatin folding in immature mouse retina cells driven by irregularly spaced nucleosomes with short DNA linkers

Nucleic Acids Research(2025)10.1093/nar/gkaf457

N/A

0DataRank · unranked

5 citations

Stephanie Portillo‐Ledesma, Evgenya Y. Popova, Nathan Jentink, Matthew T. Swulius, Zilong Li +3 more

Chromatin higher-order folding as influenced by preferred values of linker DNA

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2025.103154

N/A

0DataRank · unranked

6 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Incorporating multiscale methylation effects into nucleosome-resolution chromatin models for simulating mesoscale fibers

The Journal of Chemical Physics(2025)10.1063/5.0242199

N/A

0DataRank · unranked

5 citations

Stephanie Portillo‐Ledesma, Moshe Janani, Tamar Schlick, Zilong Li

The influence of 10n and 10n+5 linker lengths on chromatin fiber topologies explored by mesoscale modeling

Biophysical Journal(2025)10.1016/j.bpj.2025.08.030

N/A

0DataRank · unranked

3 citations

Stephanie Portillo‐Ledesma, Moshe Janani, Tamar Schlick, Zilong Li

Molecular dynamics simulations reveal subtle consequences of H3K9 and H3K27 tri-methylation on chromatin constituents

Biophysical Journal(2025)10.1016/j.bpj.2025.08.002

N/A

0DataRank · unranked

1 citations

Zilong Li, Tamar Schlick, Stephanie Portillo‐Ledesma

Compromised 2-start zigzag chromatin folding in immature mouse retina cells driven by irregularly spaced nucleosomes with short DNA linkers

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.16.633430

N/A

0DataRank · unranked

0 citations

Stephanie Portillo‐Ledesma, Evgenya Y. Popova, Nathan Jentink, Matthew T. Swulius, Zilong Li +3 more