Siyuan Ding

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of human small intestinal enterocytes”.

TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of human small intestinal enterocytes

Science Immunology(2020)10.1126/sciimmunol.abc3582

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1.0DataRank · unranked

1044 citations

María Florencia Gómez Castro, Broc T. McCune, Qiru Zeng, Paul W. Rothlauf, Naomi Sonnek +9 more

JIB-04 has broad-spectrum antiviral activity and inhibits SARS-CoV-2 replication and coronavirus pathogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.24.312165

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0.396DataRank · unranked

13 citations

Shimeng Huang, Qiru Zeng, Traci L. Bricker, James Brett Case, Jinzhu Zhou +23 more

Cholesterol 25-hydroxylase suppresses SARS-CoV-2 replication by blocking membrane fusion

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2012197117

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0DataRank · unranked

256 citations

James Brett Case, Eylan Yutuc, Xiucui Ma, Sheng Shen, María Florencia Gómez Castro +22 more

Is SARS-CoV-2 Also an Enteric Pathogen With Potential Fecal–Oral Transmission? A COVID-19 Virological and Clinical Review

Gastroenterology(2020)10.1053/j.gastro.2020.04.052

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0DataRank · unranked

224 citations

T. Jake Liang, Siyuan Ding

An Optimized Reverse Genetics System Suitable for Efficient Recovery of Simian, Human, and Murine-Like Rotaviruses

Journal of Virology(2020)10.1128/jvi.01294-20

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0DataRank · unranked

82 citations

Ningguo Feng, Nathan Meade, Kenneth H. Mellits, Philippe Jaïs, Linda L. Yasukawa +6 more

Retinoic Acid and Lymphotoxin Signaling Promote Differentiation of Human Intestinal M Cells

Gastroenterology(2020)10.1053/j.gastro.2020.03.053

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0DataRank · unranked

52 citations

Yanhua Song, Kevin Brulois, Junliang Pan, Julia Y. Co, Lili Ren +11 more

TMPRSS2 and TMPRSS4 mediate SARS-CoV-2 infection of human small intestinal enterocytes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.21.054015

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0DataRank · unranked

56 citations

María Florencia Gómez Castro, Broc T. McCune, Qiru Zeng, Paul W. Rothlauf, Naomi Sonnek +9 more

Neutralizing antibody and soluble ACE2 inhibition of a replication-competent VSV-SARS-CoV-2 and a clinical isolate of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.18.102038

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0DataRank · unranked

40 citations

Paul W. Rothlauf, Rita E. Chen, Zhuoming Liu, Haiyan Zhao, Arthur S. Kim +20 more

Rotavirus NSP1 Contributes to Intestinal Viral Replication, Pathogenesis, and Transmission

mBio(2021)10.1128/mbio.03208-21

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0DataRank · unranked

29 citations

Qiru Zeng, Jelle Matthijnssens, Harry B. Greenberg, Siyuan Ding, Gaopeng Hou

Inhibitor of growth protein 3 epigenetically silences endogenous retroviral elements and prevents innate immune activation

Nucleic Acids Research(2021)10.1093/nar/gkab1070

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0DataRank · unranked

13 citations

Gaopeng Hou, Jonathan Diep, Yaw Shin Ooi, Natalia S. Akopyants, Stephen M. Beverley +4 more

Perspectives for the optimization and utility of the rotavirus reverse genetics system

Virus Research(2021)10.1016/j.virusres.2021.198500

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0DataRank · unranked

3 citations

Harry B. Greenberg, Siyuan Ding

Rotavirus NSP1 contributes to intestinal viral replication, pathogenesis, and transmission

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.17.448915

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0DataRank · unranked

1 citations

Qiru Zeng, Jelle Matthijnssens, Harry B. Greenberg, Siyuan Ding, Gaopeng Hou

JIB-04 Has Broad-Spectrum Antiviral Activity and Inhibits SARS-CoV-2 Replication and Coronavirus Pathogenesis

mBio(2022)10.1128/mbio.03377-21

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0DataRank · unranked

22 citations

Shimeng Huang, Qiru Zeng, Traci L. Bricker, James Brett Case, Jinzhu Zhou +26 more

The Role of the VP4 Attachment Protein in Rotavirus Host Range Restriction in an In Vivo Suckling Mouse Model

Journal of Virology(2022)10.1128/jvi.00550-22

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0DataRank · unranked

17 citations

Takahiro Kawagishi, Ningguo Feng, Baoming Jiang, Siyuan Ding, Harry B. Greenberg +1 more

Targeting the Fusion Process of SARS-CoV-2 Infection by Small Molecule Inhibitors

mBio(2022)10.1128/mbio.03238-21

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0DataRank · unranked

15 citations

Parker Irvin, Zongyi Hu, Mohsin Khan, Xin Hu, Qiru Zeng +9 more

A recombinant murine-like rotavirus with Nano-Luciferase expression reveals tissue tropism, replication dynamics, and virus transmission

Frontiers in Immunology(2022)10.3389/fimmu.2022.911024

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0DataRank · unranked

15 citations

Liliana Sánchez-Tacuba, Gaopeng Hou, Takahiro Kawagishi, Ningguo Feng, Harry B. Greenberg +2 more

Re-Examining Rotavirus Innate Immune Evasion: Potential Applications of the Reverse Genetics System

mBio(2022)10.1128/mbio.01308-22

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0DataRank · unranked

11 citations

Amanda N. Pinski, Siyuan Ding, Avan Antia

Molecular Basis for Interferon-mediated Pathogen Restriction in Human Cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.21.513197

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0DataRank · unranked

8 citations

Hinissan P. Kohio, Pallavi Chandra, Adam Brown, John G. Doench, Jennifer A. Philips +3 more

Mucosal and systemic neutralizing antibodies to norovirus and rotavirus by oral immunization with recombinant rotavirus in infant mice

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.01.505917

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0DataRank · unranked

2 citations

Liliana Sánchez-Tacuba, Ningguo Feng, Verónica Costantini, Ming Tan, Xi Jiang +5 more

A recombinant murine rotavirus with Nano-Luciferase expression reveals tissue tropism, replication dynamics, and virus transmission

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.12.488073

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0DataRank · unranked

1 citations

Liliana Sánchez-Tacuba, Gaopeng Hou, Takahiro Kawagishi, Ningguo Feng, Harry B. Greenberg +2 more

SARS-CoV-2 Omicron BA.1 variant infection of human colon epithelial cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.13.487939

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0DataRank · unranked

0 citations

David M. Alvarado, Qiru Zeng, Deanna L. Davis, Matthew A. Ciorba, Siyuan Ding +1 more

Genome-wide and targeted CRISPR screens identify RNF213 as a mediator of interferon gamma–dependent pathogen restriction in human cells

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2315865120

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0DataRank · unranked

32 citations

Hinissan P. Kohio, Pallavi Chandra, Adam Brown, John G. Doench, Jennifer A. Philips +3 more

Mucosal and systemic neutralizing antibodies to norovirus induced in infant mice orally inoculated with recombinant rotaviruses

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2214421120

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0DataRank · unranked

29 citations

Liliana Sánchez-Tacuba, Ningguo Feng, Verónica Costantini, Ming Tan, Xi Jiang +5 more

Spatial Single Cell Analysis of Proteins in 2D Human Gastruloids Using Iterative Immunofluorescence

Current Protocols(2023)10.1002/cpz1.915

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0DataRank · unranked

13 citations

Seth Teague, Hina Khan, Bolin Li, Siyuan Ding, Bohan Chen +3 more

Cryptosporidium infection of human small intestinal epithelial cells induces type III interferon and impairs infectivity of Rotavirus

Gut Microbes(2024)10.1080/19490976.2023.2297897

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0DataRank · unranked

31 citations

Iti Saraav, Juhee Son, Yinxing Zhu, Denise Dayao, Avan Antia +6 more

The neonatal Fc receptor is a cellular receptor for human astrovirus

Nature Microbiology(2024)10.1038/s41564-024-01855-y

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0DataRank · unranked

17 citations

Jerome M. Molleston, Paige D. Hall, Duyên Bui, Leran Wang, Karan Bhatt +7 more

MYADM binds human parechovirus 1 and is essential for viral entry

Nature Communications(2024)10.1038/s41467-024-47825-0

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0DataRank · unranked

13 citations

Christopher M. Richards, Youlim Kim, James Zengel, Siyuan Ding, Harry B. Greenberg +2 more

Rhesus rotavirus NSP1 mediates extra-intestinal infection and is a contributing factor for biliary obstruction

PLoS Pathogens(2024)10.1371/journal.ppat.1012609

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0DataRank · unranked

12 citations

Ningguo Feng, Qiru Zeng, Liliana Sánchez-Tacuba, Takahiro Kawagishi, Grace Branham +5 more

CRISPR/Cas9 screens identify key host factors that enhance rotavirus reverse genetics efficacy and vaccine production

npj Vaccines(2024)10.1038/s41541-024-01007-7

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0DataRank · unranked

9 citations

Meagan E. Sullender, Danielle E. Campbell, Leran Wang, Sanghyun Lee, Takahiro Kawagishi +6 more

Reverse Genetics of Murine Rotavirus: A Comparative Analysis of the Wild-Type and Cell-Culture-Adapted Murine Rotavirus VP4 in Replication and Virulence in Neonatal Mice

Viruses(2024)10.3390/v16050767

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0DataRank · unranked

7 citations

Liliana Sánchez-Tacuba, Ningguo Feng, Harry B. Greenberg, Siyuan Ding, Takahiro Kawagishi

A Viral Protein 4-Based Trivalent Nanoparticle Vaccine Elicited High and Broad Immune Responses and Protective Immunity against the Predominant Rotaviruses

ACS Nano(2024)10.1021/acsnano.4c00544

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0DataRank · unranked

9 citations

Pengwei Huang, Frank S. Vago, Takahiro Kawagishi, Siyuan Ding, Harry B. Greenberg +3 more

Calpain-2 mediates SARS-CoV-2 entry via regulating ACE2 levels

mBio(2024)10.1128/mbio.02287-23

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0DataRank · unranked

6 citations

Avan Antia, Luis Alberto Casorla-Perez, Maritza Puray‐Chavez, Sebla B. Kutluay, Matthew A. Ciorba +2 more

SARS-CoV-2 Omicron BA.1 Variant Infection of Human Colon Epithelial Cells

Viruses(2024)10.3390/v16040634

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0DataRank · unranked

5 citations

David M. Alvarado, Qiru Zeng, Luis Alberto Casorla-Perez, Deanna Davis, Naomi Sonnek +3 more

SAMD9 senses cytosolic double-stranded nucleic acids in epithelial and mesenchymal cells to induce antiviral immunity

Nature Communications(2025)10.1038/s41467-025-59090-w

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0DataRank · unranked

16 citations

Wandy L. Beatty, Lili Ren, Yaw Shin Ooi, Juhee Son, Yinxing Zhu +12 more

Innate immune sensing of rotavirus by intestinal epithelial cells leads to diarrhea

Cell Host & Microbe(2025)10.1016/j.chom.2025.02.005

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0DataRank · unranked

15 citations

Juhee Son, María Florencia Gómez Castro, Takahiro Kawagishi, Xingxing Ren, Alexa N. Roth +10 more

Prefoldin complex promotes interferon-stimulated gene expression and is inhibited by rotavirus VP3

Nature Communications(2025)10.1038/s41467-025-63393-3

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0DataRank · unranked

5 citations

Yanhua Song, Dilip Kumar, Peter K. Jackson, B. V. Venkataram Prasad, Siyuan Ding +1 more

Development of intestinal tissue-resident T cells in early-life mice before and after weaning

Scientific Reports(2025)10.1038/s41598-025-26848-7

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0DataRank · unranked

1 citations

Siyuan Ding, Federico Perdomo-Celis, M. Franco, Catherine Montenegro

Neutralizing Antibody and Soluble ACE2 Inhibition of a Replication-Competent VSV-SARS-CoV-2 and a Clinical Isolate of SARS-CoV-2

Cell Host & Microbe(2020)10.1016/j.chom.2020.06.021

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0DataRank · unranked

486 citations

Paul W. Rothlauf, Rita E. Chen, Zhuoming Liu, Haiyan Zhao, Arthur S. Kim +20 more