Tomàs Marquès‐Bonet

Institució Catalana de Recerca i Estudis Avançats

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesPsychology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

44.9Author DataRank

Indexed papers

20in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 20 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A Draft Sequence of the Neandertal Genome

Science(2010)10.1126/science.1188021

Top 2%

8.6DataRank

Top 2%4581 citations

Johannes Krause, Adrian W. Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher +62 more

Papers

Driven by 58 papers — median percentile 88. Top paper: “A Draft Sequence of the Neandertal Genome”.

A Draft Sequence of the Neandertal Genome

Science(2010)10.1126/science.1188021

Top 2%

8.6DataRank

Top 2%4581 citations

Johannes Krause, Adrian W. Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher +62 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Great ape genetic diversity and population history

Nature(2013)10.1038/nature12228

Top 4%

5.8DataRank

Top 4%992 citations

Peter H. Sudmant, Jeffrey M. Kidd, Alexandra P. Lewis, Joanna L. Kelley, Belen Lorente-Galdos +83 more

A comparative genomics multitool for scientific discovery and conservation

Nature(2020)10.1038/s41586-020-2876-6

Top 4%

5.0DataRank

Top 4%447 citations

Aitor Serres, Joel Armstrong, Jeremy Johnson, Voichita D. Marinescu, Eva Murén +43 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Direct estimation of mutations in great apes reconciles phylogenetic dating

Nature Ecology & Evolution(2019)10.1038/s41559-018-0778-x

N/A

4.5DataRank · unranked

204 citations

Christina Hvilsom, Tomàs Marquès‐Bonet, Thomas Mailund, Mikkel Heide Schierup, Søren Besenbacher

A comparison of gene expression and DNA methylation patterns across tissues and species

Genome Research(2020)10.1101/gr.254904.119

Top 5%

4.1DataRank

Top 5%146 citations

Julien Roux, Irene Hernando-Herraez, Nicholas E. Banovich, Raquel García-Pérez, Chiaowen Joyce Hsiao +5 more

Evolutionary constraint and innovation across hundreds of placental mammals

Science(2023)10.1126/science.abn3943

Top 7%

3.0DataRank

Top 7%271 citations

Irene M. Kaplow, Diane P. Genereux, Michael X. Dong, Graham M. Hughes, Xue Li +78 more

A global catalog of whole-genome diversity from 233 primate species

Science(2023)10.1126/science.abn7829

Top 8%

2.6DataRank

Top 8%215 citations

Hong Gao, Mareike C. Janiak, Martin Kuhlwilm, Joseph D. Orkin, Thomas Bataillon +70 more

Differential DNA methylation of vocal and facial anatomy genes in modern humans

Nature Communications(2020)10.1038/s41467-020-15020-6

N/A

2.1DataRank · unranked

133 citations

Malka Nissim-Rafinia, Lily Agranat-Tamir, Genevieve Housman, Raquel García-Pérez, Esther Lizano +39 more

Relating enhancer genetic variation across mammals to complex phenotypes using machine learning

Science(2023)10.1126/science.abm7993

N/A

2.0DataRank · unranked

90 citations

Alyssa J. Lawler, Daniel E. Schäffer, Chaitanya Srinivasan, Heather H. Sestili, Morgan Wirthlin +82 more

The contribution of historical processes to contemporary extinction risk in placental mammals

Science(2023)10.1126/science.abn5856

N/A

1.9DataRank · unranked

106 citations

Megan A. Supple, Ayshwarya Subramanian, Anish Mudide, Ross Swofford, Aitor Serres‐Armero +87 more

Evolution of the ancestral mammalian karyotype and syntenic regions

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2209139119

Top 12%

1.8DataRank

Top 12%96 citations

Marco Corbo, Kim, Jaebum, Jason Turner-Maier, Marta Farré, Denis M. Larkin +87 more

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/208330

Top 17%

1.2DataRank

Top 17%26 citations

Grace Tiao, Bin Zhu, Tobias Rausch, Francesc Muyas, Alan J. Robertson +108 more

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Nature Biotechnology(2024)10.1038/s41587-023-02100-3

N/A

1.2DataRank · unranked

69 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +36 more

Control-independent mosaic single nucleotide variant detection with DeepMosaic

Nature Biotechnology(2023)10.1038/s41587-022-01559-w

N/A

1.1DataRank · unranked

40 citations

Xin Xu, Martin W. Breuss, Danny Antaki, Laurel Ball, Changuk Chung +95 more

The Earth BioGenome Project 2020: Starting the clock

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115635118

N/A

0.887DataRank · unranked

370 citations

Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Miklós Bálint +80 more

Two hundred and five newly assembled mitogenomes provide mixed evidence for rivers as drivers of speciation for Amazonian primates

Molecular Ecology(2022)10.1111/mec.16554

N/A

0.886DataRank · unranked

40 citations

Felipe Ennes Silva, Robin M. D. Beck, Dorien de Vries, Lukas F. K. Kuderna, Nicole S. Torosin +13 more

Population dynamics and genetic connectivity in recent chimpanzee history

Cell Genomics(2022)10.1016/j.xgen.2022.100133

Top 23%

0.874DataRank

Top 23%48 citations

Martin Kuhlwilm, Carlos Morcillo-Suárez, Marina Álvarez-Estapé, Jack D. Lester, Paolo Gratton +83 more

Integrating gene annotation with orthology inference at scale

Science(2023)10.1126/science.abn3107

N/A

0.804DataRank · unranked

212 citations

Chetan Munegowda, Ekaterina Osipova, David Jebb, Virag Sharma, Moritz Blumer +91 more

The landscape of tolerated genetic variation in humans and primates

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.01.538953

N/A

0.782DataRank · unranked

24 citations

Tobias Hamp, Jeffrey M. Ede, Joshua G. Schraiber, Jeremy F. McRae, Moriel Singer‐Berk +92 more

The landscape of tolerated genetic variation in humans and primates

Science(2023)10.1126/science.abn8197

N/A

0.780DataRank · unranked

180 citations

Tobias Hamp, Jeffrey M. Ede, Joshua G. Schraiber, Jeremy F. McRae, Moriel Singer‐Berk +92 more

Phylogenomic analyses provide insights into primate evolution

Science(2023)10.1126/science.abn6919

N/A

0.773DataRank · unranked

172 citations

Long Zhou, Fang Li, Lan Zhao, Bao-Lin Zhang, Feng Shao +38 more

Insights into mammalian TE diversity through the curation of 248 genome assemblies

Science(2023)10.1126/science.abn1430

N/A

0.737DataRank · unranked

135 citations

Nicole S. Paulat, Jennifer M. Korstian, Jenna Grimshaw, Michaela K. Halsey, Kevin A. Sullivan +83 more

Leveraging base-pair mammalian constraint to understand genetic variation and human disease

Science(2023)10.1126/science.abn2937

N/A

0.721DataRank · unranked

121 citations

Jennifer R. S. Meadows, Steven Gazal, BaDoi N. Phan, Xue Li, Diane P. Genereux +70 more

Identification of constrained sequence elements across 239 primate genomes

Nature(2023)10.1038/s41586-023-06798-8

N/A

0.713DataRank · unranked

115 citations

Jacob C. Ulirsch, Sabrina Mohd Rashid, Mohamed Ameen, Laksshman Sundaram, Hickey, Glenn +87 more

Standards recommendations for the Earth BioGenome Project

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115639118

N/A

0.706DataRank · unranked

110 citations

Richard Durbin, Paul Flicek, Kerstin Lindblad‐Toh, Xiaofeng Wei, John M. Archibald +40 more

The Somatic Mosaicism across Human Tissues Network

Nature(2025)10.1038/s41586-025-09096-7

N/A

0.672DataRank · unranked

43 citations

Ji Won Oh, Yujin Angelina Choi, Nam Seop Lim, Boxun Zhao, Adam Voshall +365 more

The functional and evolutionary impacts of human-specific deletions in conserved elements

Science(2023)10.1126/science.abn2253

N/A

0.657DataRank · unranked

79 citations

Ava Mackay-Smith, Kousuke Mouri, Meilín Fernández García, Michael X. Dong, Jared F. Akers +88 more

Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2201076120

N/A

0.596DataRank · unranked

52 citations

Tomás Carrasco-Valenzuela, Elisa Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander +42 more

Characterization of nuclear mitochondrial insertions in the whole genomes of primates

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa089

N/A

0.571DataRank · unranked

44 citations

Weichen Zhou, Javier Prado-Martinez, Tomàs Marquès‐Bonet, Ryan E. Mills, Gargi Dayama

Past Connectivity but Recent Inbreeding in Cross River Gorillas Determined Using Whole Genomes from Single Hairs

Genes(2023)10.3390/genes14030743

Top 35%

0.567DataRank

Top 35%13 citations

Harvinder Pawar, Claudia Fontsere, Amber E. Trujillo, Jessica L. Gunson, Richard A. Bergl +11 more

Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia

Molecular Biology and Evolution(2023)10.1093/molbev/msad092

N/A

0.561DataRank · unranked

18 citations

Jessica M. Storer, Diana D. Moreno-Santillán, Austin Osmanski, Kevin A. Sullivan, Jenna Grimshaw +85 more

Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures

Nature Communications(2021)10.1038/s41467-021-23397-1

N/A

0.561DataRank · unranked

41 citations

Paula Esteller-Cucala, Glòria Mas Martín, Irene Lobón, Valerio Di Carlo, Meritxell Riera +8 more

Vocal learning–associated convergent evolution in mammalian proteins and regulatory elements

Science(2024)10.1126/science.abn3263

N/A

0.542DataRank · unranked

36 citations

Tobias A. Schmid, Julie E. Elie, Xiaomeng Zhang, Amanda Kowalczyk, Ruby Redlich +89 more

Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta)

PLoS Genetics(2020)10.1371/journal.pgen.1008742

N/A

0.494DataRank · unranked

26 citations

Inna Povolotskaya, Diego A. Hartasánchez, Xavier Farré, Marcos Fernández-Callejo, Muthuswamy Raveendran +8 more

A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0)

GigaScience(2017)10.1093/gigascience/gix098

Top 40%

0.483DataRank

Top 40%24 citations

Chad Tomlinson, LaDeana W Hillier, Annabel Tran, Ian T Fiddes, Joel Armstrong +21 more

Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros

Molecular Biology and Evolution(2023)10.1093/molbev/msad180

N/A

0.442DataRank · unranked

18 citations

Binia De Cahsan, Michael V. Westbury, Xin Sun, Ashot Margaryan, Claudia Fontsere +11 more

A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)

GigaScience(2022)10.1093/gigascience/giac026

Top 43%

0.433DataRank

Top 43%9 citations

Joseph D. Orkin, Bettina Haase, Jacquelyn Mountcastle, Mads F. Bertelsen, Olivier Fédrigo +4 more

Transcriptome innovations in primates revealed by single-molecule long-read sequencing

Genome Research(2022)10.1101/gr.276395.121

N/A

0.416DataRank · unranked

15 citations

Xiaoyu Zhan, Marina Álvarez-Estapé, Cristina Chiva, Paula Esteller-Cucala, Raquel García-Pérez +9 more

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs

Science(2023)10.1126/science.abn5887

N/A

0.406DataRank · unranked

14 citations

Heather J. Huson, Kathleen M. Morrill, Mingshan Wang, Xue Li, Krishnamoorthy Srikanth +90 more

Variation in predicted COVID‐19 risk among lemurs and lorises

American Journal of Primatology(2021)10.1002/ajp.23255

N/A

0.396DataRank · unranked

13 citations

Joseph D. Orkin, Mareike C. Janiak, Alejandro Valenzuela, Lukas F. K. Kuderna, Frank Marrone +33 more

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546576

N/A

0.373DataRank · unranked

11 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +32 more

Genomic adaptation to small population size and saltwater consumption in the critically endangered Cat Ba langur

Nature Communications(2024)10.1038/s41467-024-52811-7

N/A

0.331DataRank · unranked

7 citations

N. Leonard, Rick Passaro, M Luan, Pham Van Tuyen, Le Thi Ngoc Han +18 more

Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases

Scientific Data(2023)10.1038/s41597-023-02645-7

Top 56%

0.293DataRank

Top 56%5 citations

Yeongjun Jang, Taejeong Bae, Adriana Cherskov, Sarah B. Emery, Liana Fasching +90 more

Rare penetrant mutations confer severe risk of common diseases

medRxiv(2023)10.1101/2023.05.01.23289356

N/A

0.269DataRank · unranked

5 citations

Jeremy F. McRae, Jacob C. Ulirsch, Jacqueline S. Dron, Tobias Hamp, Yanshen Yang +16 more

Illuminating the function of the orphan transporter, SLC22A10, in humans and other primates

Nature Communications(2024)10.1038/s41467-024-48569-7

N/A

0.241DataRank · unranked

4 citations

Luis Ferrández-Peral, Pol Alentorn-Moron, Claudia Fontsere, Merve Ceylan, Megan L. Koleske +18 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.220DataRank · unranked

3 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Author Correction: Comparative and demographic analysis of orang-utan genomes

Nature(2022)10.1038/s41586-022-04799-7

Top 67%

0.174DataRank

Top 67%2 citations

LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny +95 more

Illuminating the Function of the Orphan Transporter, SLC22A10 in Humans and Other Primates

Research Square(2023)10.21203/rs.3.rs-3263845/v1

N/A

0.104DataRank · unranked

1 citations

Sook Wah Yee, Luis Ferrández-Peral, Pol Alentorn, Claudia Fontsere, Merve Ceylan +15 more

Ghost admixture in eastern gorillas

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.19.521012

N/A

0DataRank · unranked

0 citations

Aigerim Rymbekova, Sebastián Cuadros-Espinoza, Xin Huang, Marc de Manuel, Tom van der Valk +22 more

Inferring DNA methylation in non-skeletal tissues of ancient specimens

Nature Ecology & Evolution(2024)10.1038/s41559-024-02571-w

N/A

0DataRank · unranked

3 citations

Malka Nissim‐Rafinia, Chen Leibson, Nir Galun, Tomàs Marquès‐Bonet, Adam Kandel +4 more

Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins

Genome Biology and Evolution(2020)10.1093/gbe/evaa125

N/A

0DataRank · unranked

20 citations

Marc de Manuel, Stéphane Peyrégne, Raymond Do, Kay Prüfer, Tomàs Marquès‐Bonet +4 more

Y chromosome sequence and epigenomic reconstruction across human populations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.02.518894

Top 100%

0DataRank

Top 100%0 citations

Marc Palmada‐Flores, Lukas F. K. Kuderna, Claudia Fontsere, Aitor Serres‐Armero, Marc Dabad +13 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Transcriptome innovations in primates revealed by single-molecule long-read sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.10.468034

N/A

0DataRank · unranked

0 citations

Xiaoyu Zhan, Marina Álvarez-Estapé, Cristina Chiva, Paula Esteller-Cucala, Raquel García-Pérez +9 more

Copy number variation underlies complex phenotypes in domestic dog breeds and other canids

Genome Research(2021)10.1101/gr.266049.120

N/A

0DataRank · unranked

22 citations

Brian W. Davis, Inna Povolotskaya, Carlos Morcillo-Suárez, Jocelyn Plassais, David Juan +3 more

Illuminating the Function of the Orphan Transporter, SLC22A10 in Humans and Other Primates

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.08.552553

N/A

0DataRank · unranked

0 citations

Luis Ferrández-Peral, Pol Alentorn, Claudia Fontsere, Merve Ceylan, Megan L. Koleske +15 more

Tomàs Marquès‐Bonet

Indexed papers

Top data-sharing exemplar

Papers