🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Markus W. Covert

Stanford University

ORCID: 0000-0002-5993-8912
Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.5Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

Science(2020)10.1126/science.aav3751
Top 6%
4.0DataRank
Top 6%166 citations

Travis A. Ahn-Horst, Heejo Choi, Nicholas A. Ruggero, Javier Carrera, J. C. Mason +16 more

Papers

Driven by 16 papers — median percentile 90. Top paper: “Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation”.

Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

Science(2020)10.1126/science.aav3751
Top 6%
4.0DataRank
Top 6%166 citations

Travis A. Ahn-Horst, Heejo Choi, Nicholas A. Ruggero, Javier Carrera, J. C. Mason +16 more

The EcoCyc Database (2023)

EcoSal Plus(2023)10.1128/ecosalplus.esp-0002-2023
Top 10%
2.1DataRank
Top 10%97 citations

Suzanne Paley, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter Midford +16 more

The EcoCyc database (2025)

EcoSal Plus(2025)10.1128/ecosalplus.esp-0019-2024
Top 38%
0.512DataRank
Top 38%22 citations

Suzanne Paley, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter Midford +18 more

Whole-Colony Modeling of Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.27.441666
N/A
0DataRank · unranked
5 citations

Eran Agmon, Ryan Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce +2 more

Vivarium: an interface and engine for integrative multiscale modeling in computational biology

Bioinformatics(2022)10.1093/bioinformatics/btac049
N/A
0DataRank · unranked
37 citations

Ryan Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison +2 more

A dynamic HIF1α- PPARγ circuit controls a paradoxical adipocyte regulatory landscape

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.17.492374
N/A
0DataRank · unranked
0 citations

Michael L. Zhao, Kyle M. Kovary, Edward L. LaGory, Markus W. Covert, Mary N. Teruel +1 more

Vivarium: an Interface and Engine for Integrative Multiscale Modeling in Computational Biology

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.27.441657
N/A
0DataRank · unranked
9 citations

Ryan Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison +2 more

T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response

Cell Reports(2023)10.1016/j.celrep.2023.113494
N/A
0DataRank · unranked
32 citations

Maximillian Haist, Nina B. Horowitz, Chiara Caraccio, Yuqi Tan, Andrew J. Rech +11 more

Whole-cell modeling of E. coli confirms that in vitro tRNA aminoacylation measurements are insufficient to support cell growth and predicts a positive feedback mechanism regulating arginine biosynthesis

Nucleic Acids Research(2023)10.1093/nar/gkad435
N/A
0DataRank · unranked
19 citations

Markus W. Covert, Heejo Choi

Context-dependent regulation of lipid accumulation in adipocytes by a HIF1α-PPARγ feedback network

Cell Systems(2023)10.1016/j.cels.2023.10.010
N/A
0DataRank · unranked
16 citations

Michael L. Zhao, Stevan Jeknić, Kyle M. Kovary, Edward L. LaGory, Markus W. Covert +2 more

Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011232
N/A
0DataRank · unranked
13 citations

Sean Cheah, Mica Y. Yang, Mattheus Wolff, Ryan Spangler, Lee Talman +5 more

An optimized reporter of the transcription factor hypoxia-inducible factor 1α reveals complex HIF-1α activation dynamics in single cells

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.104599
N/A
0DataRank · unranked
9 citations

Takamasa Kudo, Joanna J. Song, Markus W. Covert, Stevan Jeknić

Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.06.570168
N/A
0DataRank · unranked
1 citations

Eran Agmon, Nina B. Horowitz, Matthew Lamore, John B. Sunwoo, Markus W. Covert +2 more

Integrating multiplexed imaging and multiscale modeling identifies tumor phenotype conversion as a critical component of therapeutic T cell efficacy

Cell Systems(2024)10.1016/j.cels.2024.03.004
N/A
0DataRank · unranked
25 citations

Eran Agmon, Nina B. Horowitz, Tze-Kai Tan, Matthew Lamore, John B. Sunwoo +3 more

Cross-evaluation of E. coli’s operon structures via a whole-cell model suggests alternative cellular benefits for low- versus high-expressing operons

Cell Systems(2024)10.1016/j.cels.2024.02.002
N/A
0DataRank · unranked
11 citations

Mialy DeFelice, Taryn E. Gillies, Travis A. Ahn-Horst, Cecelia Andrews, Markus Krummenacker +4 more

Building Structural Models of a Whole Mycoplasma Cell

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.167351
N/A
0DataRank · unranked
76 citations

Ludovic Autin, Jonathan R Karr, Markus W. Covert, Arthur J. Olson, David S. Goodsell +1 more