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Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

Science(2020)10.1126/science.aav3751Source: DataRank Database

Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation is a dataset published in Science (2020). On theSindex it has a DataRank of 4.0, placing it in the top 5.6% of the data-sharing corpus. It has been cited 166 times, with 100 citing works in its 1-hop citation network.

Top 6%percentile

4.0DataRank

Ranks in the top 6% for downstream scientific impact

Data paper Open Access166 citations · 100 citing works in its network

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Linked data & code

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DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (20 grants)Impact (FWCI 7.90)OA: greenTopics (17)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 19%Citation Network 81%

Base Score Contribution

0.768

From this paper's citation signal

Citation Network Contribution

3.2

From 100 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 100 citers.

Grow AI virtual cells: three data pillars and closed-loop learning
Cell Research202541 citations15 referencesContributes 0.249
Innovation trends in industrial biotechnology
Trends in biotechnology2022138 citations39 referencesContributes 0.127
RBS and Promoter Strengths Determine the Cell-Growth-Dependent Protein Mass Fractions and Their Optimal Synthesis Rates
ACS Synthetic Biology202126 citations32 referencesContributes 0.103
Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable
bioRxiv (Cold Spring Harbor Laboratory)202028 citations46 referencesContributes 0.073
The E. coli Whole-Cell Modeling Project
EcoSal Plus202127 citations47 referencesContributes 0.071

Authors (21)

Travis A. Ahn-Horst ORCID,Heejo Choi ORCID,Nicholas A. Ruggero ORCID,Javier Carrera,J. C. Mason ORCID

Live enrichment

PubMed:32703847 PMC:PMC7990026 OpenAlex:https://openalex.org/W3044339796

National Science Foundation

Grant: Graduate Research Fellowship

National Institutes of Health

Grant: P50GM10715

National Institutes of Health

Grant: 5DP1LM01150

National Institutes of Health

Grant: GM077678

National Institute of Standards and Technology

Grant: 70NANB15H192 (JIMB Training Grant Graduate Fellowship)

Agilent Foundation

Grant: Graduate Student Fellowship

Paul G. Allen Family Foundation

Grant: Allen Discovery Center

Paul G. Allen Family Foundation

Grant: Allen Distinguished Investigator

U.S. Department of Energy

Grant: DE-FG02-97ER25308

Stanford University

Grant: Benchmark Stanford Graduate Fellowship

Thomas and Stacey Siebel Foundation

Grant: Graduate Scholarship

Stanford University

Grant: Dean's Postdoctoral Fellowship

Stanford University

Grant: Stanford Graduate Fellowship

NIGMS NIH HHS

Grant: R01 GM077678

NIGMS NIH HHS

Grant: U24 GM077678

NLM NIH HHS

Grant: R01 LM013229

NIH HHS

Grant: DP1 OD006413

NIGMS NIH HHS

Grant: P50 GM107615

NLM NIH HHS

Grant: DP1 LM011510

Stanford University

Grant: Dean's Postdoctoral Fellowship

FWCI

7.90

Citation Percentile

1.0%

Citation Trend

2019

2020

2021

2022

2023

2024

2025

2026

green

repositoryhttps://www.osti.gov/biblio/1781905

publisherhttps://syndication.highwire.org/content/doi/10.1126/science.aav3751

publisherhttps://www.science.org/doi/pdf/10.1126/science.aav3751

journalhttps://doi.org/10.1126/science.aav3751

Fields of Study

Microbial Metabolic Engineering and BioproductionBacterial Genetics and BiotechnologyGene Regulatory Network Analysis

MeSH Terms

Data AnalysisComputer SimulationEscherichia coliEscherichia coli ProteinsDatasets as Topic

Keywords

Escherichia coliRibosomeComputational biologyRNABiologyComputer scienceChemistryBiochemistryGene

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co-cited

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Top 6%

3.9DataRank

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co-cited

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eLife(2020)

co-cited

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Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (21)

Funding (20 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)

Related Papers (10)