Thomas J. Sharpton

Also affiliated with Oregon University System

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.7Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Papers

Driven by 41 papers — median percentile 48. Top paper: “A framework for human microbiome research”.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x

N/A

0.918DataRank · unranked

454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults

Gut Microbes(2024)10.1080/19490976.2024.2315633

N/A

0.780DataRank · unranked

26 citations

Eli B. Smart, John A. Bouranis, Jaewoo Choi, Robert Danczak, Carmen P. Wong +8 more

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

eLife(2021)10.7554/elife.66398

N/A

0.681DataRank · unranked

17 citations

Gerd Bobe, Cristobal L. Miranda, Malcolm B. Lowry, Victor L. Hsu, Christiane V. Löhr +8 more

Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in AppNL-G-F, AppNL-F, and wild type mice

Scientific Reports(2021)10.1038/s41598-021-83851-4

N/A

0.655DataRank · unranked

78 citations

Eileen Ruth S. Torres, Keaton Stagaman, Kristin Kasschau, Mariam Okhovat, Sarah Holden +9 more

Sulforaphane and Sulforaphane‐Nitrile Metabolism in Humans Following Broccoli Sprout Consumption: Inter‐individual Variation, Association with Gut Microbiome Composition, and Differential Bioactivity

Molecular Nutrition & Food Research(2023)10.1002/mnfr.202300286

N/A

0.635DataRank · unranked

21 citations

Laura M. Beaver, Carmen P. Wong, Jaewoo Choi, Sean Hamer, Edward W. Davis +6 more

Early enteric and hepatic responses to ingestion of polystyrene nanospheres from water in C57BL/6 mice

Frontiers in Water(2022)10.3389/frwa.2022.925781

N/A

0.367DataRank · unranked

7 citations

Lawrence R. Curtis, Thomas J. Sharpton, Christiane V. Löhr, Susanne M. Brander, Stacey L. Harper +5 more

Retrospective analysis of the Zebrafish International Resource Center diagnostic data links Pseudocapillaria tomentosa to intestinal neoplasms in zebrafish Danio rerio (Hamilton 1822)

Journal of Fish Diseases(2020)10.1111/jfd.13233

Top 52%

0.336DataRank

Top 52%8 citations

Thomas J. Sharpton, Katrina N. Murray, Andrew D. Kent, Michael L. Kent, Russel M. Schaaf

Reversing metabolic dysregulation in farnesoid X receptor knockout mice via gut microbiota modulation

PLoS ONE(2025)10.1371/journal.pone.0331040

N/A

0.165DataRank · unranked

2 citations

Armando Alcázar Magaña, Alexandra Alexiev, Thomas J. Sharpton, Claudia S. Maier, Chrissa Kioussi +2 more

Composition of the Gut Microbiome Influences Production of Sulforaphane-Nitrile and Iberin-Nitrile from Glucosinolates in Broccoli Sprouts

Nutrients(2021)10.3390/nu13093013

N/A

0DataRank · unranked

29 citations

Laura M. Beaver, Jaewoo Choi, Carmen P. Wong, Duo Jiang, Thomas J. Sharpton +3 more

Pseudocapillaria tomentosa , Mycoplasma spp., and Intestinal Lesions in Experimentally Infected Zebrafish Danio rerio

Zebrafish(2021)10.1089/zeb.2020.1955

N/A

0DataRank · unranked

23 citations

Elena S. Wall, Sophie R Sichel, Virginia Watral, Keaton Stagaman, Thomas J. Sharpton +2 more

TXN, a Xanthohumol Derivative, Attenuates High-Fat Diet Induced Hepatic Steatosis by Antagonizing PPARγ

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.11.426043

N/A

0DataRank · unranked

0 citations

Gerd Bobe, Cristobal L. Miranda, Malcolm B. Lowry, Victor L. Hsu, Christiane V. Löhr +8 more

Interplay between Cruciferous Vegetables and the Gut Microbiome: A Multi-Omic Approach

Nutrients(2022)10.3390/nu15010042

N/A

0DataRank · unranked

28 citations

Laura M. Beaver, Duo Jiang, Jaewoo Choi, Carmen P. Wong, Edward W. Davis +5 more

Fecal Implants From AppNL–G–F and AppNL–G–F/E4 Donor Mice Sufficient to Induce Behavioral Phenotypes in Germ-Free Mice

Frontiers in Behavioral Neuroscience(2022)10.3389/fnbeh.2022.791128

N/A

0DataRank · unranked

23 citations

Keaton Stagaman, Kristin D. Kasschau, Sarah Holden, Natalia Shulzhenko, Thomas J. Sharpton +2 more

A Non-Randomized Trial Investigating the Impact of Brown Rice Consumption on Gut Microbiota, Attention, and Short-Term Working Memory in Thai School-Aged Children

Nutrients(2022)10.3390/nu14235176

N/A

0DataRank · unranked

6 citations

Lisa K. Marriott, Eleni Gentekaki, Kongkiat Kespechara, Thomas J. Sharpton, Justin Denny +3 more

The fecal microbiota of Thai school-aged children associated with demographic factors and diet

PeerJ(2022)10.7717/peerj.13325

N/A

0DataRank · unranked

7 citations

Eleni Gentekaki, Kongkiat Kespechara, Justin Denny, Thomas J. Sharpton, Lisa K. Marriott +3 more

Draft Genome Sequence of Plesiomonas shigelloides Strain zfcc0051 (Phylum Proteobacteria )

Microbiology Resource Announcements(2022)10.1128/mra.00074-22

Top 100%

0DataRank

Top 100%0 citations

Addison M. Browning, Quinn Washburn, Micheal L. Kent, Thomas J. Sharpton, Christopher A. Gaulke +1 more

Best practice for wildlife gut microbiome research: A comprehensive review of methodology for 16S rRNA gene investigations

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1092216

N/A

0DataRank · unranked

42 citations

Ian R. Humphreys, Quinn Washburn, Holly K. Arnold, Keaton Stagaman, Kristin D. Kasschau +4 more

Identification of rare microbial colonizers of plastic materials incubated in a coral reef environment

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1259014

N/A

0DataRank · unranked

21 citations

Edward W. Davis, Holly K. Arnold, An Mei Y. Daniels, Susanne M. Brander, Rachel Parsons +3 more

Disentangling the link between zebrafish diet, gut microbiome succession, and Mycobacterium chelonae infection

Animal Microbiome(2023)10.1186/s42523-023-00254-8

N/A

0DataRank · unranked

13 citations

Colleen E. Al‐Samarrie, Kristin D. Kasschau, Zoltán M. Varga, Michael L. Kent, Thomas J. Sharpton +1 more

Gastrointestinal Dysfunction in Neurological and Neurodegenerative Disorders

Seminars in Neurology(2023)10.1055/s-0043-1771459

N/A

0DataRank · unranked

11 citations

Thomas J. Sharpton, Jacob Raber

Compositional Graphical Lasso Resolves the Impact of Parasitic Infection on Gut Microbial Interaction Networks in a Zebrafish Model

Journal of the American Statistical Association(2023)10.1080/01621459.2022.2164287

N/A

0DataRank · unranked

11 citations

Duo Jiang, Austin Hammer, Thomas J. Sharpton, Yuan Jiang, Chuan Tian

Early detection of Pseudocapillaria tomentosa by qPCR in four lines of zebrafish, Danio rerio (Hamilton 1882)

Journal of Fish Diseases(2023)10.1111/jfd.13773

N/A

0DataRank · unranked

3 citations

Connor Leong, Kristin D. Kasschau, Thomas J. Sharpton, Michael L. Kent, Corbin J. Schuster

Assessment of various standard fish diets on gut microbiome of platyfish Xiphophorus maculatus

Journal of Experimental Zoology Part B Molecular and Developmental Evolution(2023)10.1002/jez.b.23218

N/A

0DataRank · unranked

4 citations

Crystal Russo, Camila Carlos‐Shanley, Merritt L Drewery, Will Boswell, Markita Savage +7 more

Tenth Aquatic Models of Human Disease Conference 2022 Workshop Report: Aquatics Nutrition and Reference Diet Development

Zebrafish(2023)10.1089/zeb.2023.0079

N/A

0DataRank · unranked

3 citations

Yuan Lü, Michael L. Kent, Stephen A. Watts, Zoltán M. Varga, Thomas J. Sharpton

Common laboratory diets differentially influence zebrafish gut microbiome’s successional development and sensitivity to pathogen exposure

Research Square(2023)10.21203/rs.3.rs-2530939/v1

N/A

0DataRank · unranked

2 citations

Colleen E. Al‐Samarrie, Kristin D. Kasschau, Zoltán Varga, Michael L. Kent, Thomas J. Sharpton +1 more

Defining the environmental determinants of dysbiosis at scale with zebrafish

Current Opinion in Toxicology(2023)10.1016/j.cotox.2023.100430

N/A

0DataRank · unranked

0 citations

Alexandra Alexiev, Robyn L. Tanguay, Thomas J. Sharpton

The zebrafish gut microbiome influences benzo[a]pyrene developmental neurobehavioral toxicity

Scientific Reports(2024)10.1038/s41598-024-65610-3

N/A

0DataRank · unranked

17 citations

Alexandra Alexiev, Michael J. Sieler, Austin Hammer, Kristin D. Kasschau, Lisa Truong +3 more

Gut microbiota metabolically mediate intestinal helminth infection in zebrafish

mSystems(2024)10.1128/msystems.00545-24

N/A

0DataRank · unranked

14 citations

Christopher A. Gaulke, Manuel García‐Jaramillo, Connor Leong, Jeffrey T. Morré, Michael J. Sieler +6 more

The zebrafish gut microbiome influences benzo[a]pyrene developmental neurotoxicity

Research Square(2024)10.21203/rs.3.rs-3944268/v1

N/A

0DataRank · unranked

1 citations

Alexandra Alexiev, Michael J. Sieler, Austin Hammer, Kristin D. Kasschau, Lisa Truong +3 more

Xanthohumol Alters Gut Microbiota Metabolism and Bile Acid Dynamics in Gastrointestinal Simulation Models of Eubiotic and Dysbiotic States

International Journal of Molecular Sciences(2025)10.3390/ijms262110698

N/A

0DataRank · unranked

1 citations

Nicholas J. Reichart, Claudia S. Maier, Thomas J. Sharpton, Ryan Bradley, Thomas Metz +2 more

Harnessing the gut microbiome in the fight against anthelminthic drug resistance

Current Opinion in Microbiology(2020)10.1016/j.mib.2020.01.017

N/A

0DataRank · unranked

22 citations

Leigh Combrink, Holly K. Arnold, Christopher A. Gaulke, Michael L. Kent, Thomas J. Sharpton

Microbial Interaction Network Estimation via Bias-Corrected Graphical Lasso

Statistics in Biosciences(2020)10.1007/s12561-020-09279-y

N/A

0DataRank · unranked

9 citations

Thomas J. Sharpton, Yuan Jiang, Duo Jiang

Germ-Free Swiss Webster Mice on a High-Fat Diet Develop Obesity, Hyperglycemia, and Dyslipidemia

Microorganisms(2020)10.3390/microorganisms8040520

N/A

0DataRank · unranked

32 citations

Gerd Bobe, Cristobal L. Miranda, Stephany Vasquez‐Perez, Jaewoo Choi, Malcolm B. Lowry +7 more

An integrated gene catalog of the zebrafish gut microbiome reveals significant homology with mammalian microbiomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.15.153924

N/A

0DataRank · unranked

16 citations

Laura M. Beaver, Courtney R. Armour, Ian R. Humphreys, Carrie L. Barton, Robyn L. Tanguay +3 more

A Microbial Signature Following Bariatric Surgery is Robustly Consistent Across Multiple Cohorts

medRxiv(2020)10.1101/2020.11.12.20230581

N/A

0DataRank · unranked

6 citations

Ian M. Carroll, Thomas J. Sharpton, Emily C. Bulik‐Sullivan, Leslie J. Heinberg, Kristine J. Steffen +2 more

Interspecies comparative metagenomics reveals correlated gut microbiome functional capacities among vertebrates

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.15.153320

N/A

0DataRank · unranked

1 citations

Courtney R. Armour, Ian R. Humphreys, Laura M. Beaver, Carrie L. Barton, Lucia Carbone +5 more

Pseudocapillaria tomentosa, Mycoplasma spp., and intestinal lesions in experimentally infected zebrafish Danio rerio

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.08.373357

N/A

0DataRank · unranked

0 citations

Elena S. Wall, Sophie R Sichel, Virginia Watral, Keaton Stagaman, Thomas J. Sharpton +2 more

Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes

Nature Communications(2021)10.1038/s41467-020-20313-x

N/A

0DataRank · unranked

174 citations

Manoj Gurung, Zhipeng Li, Manuel García‐Jaramillo, Renee L. Greer, Christopher A. Gaulke +15 more

Diet and gut microbiome enterotype are associated at the population level in African buffalo

Nature Communications(2021)10.1038/s41467-021-22510-8

N/A

0DataRank · unranked

106 citations

Keaton Stagaman, Robert S. Spaan, Henri J. Combrink, Thomas J. Sharpton, Brianna R. Beechler +2 more

Thomas J. Sharpton

Indexed papers

Top data-sharing exemplar

Papers