Draft Genome Sequence of Plesiomonas shigelloides Strain zfcc0051 (Phylum Proteobacteria ) is a dataset published in Microbiology Resource Announcements (2022). On theSindex it has a DataRank of 0, placing it in the top 100% of the data-sharing corpus. Its calibrated FAIR score is 71/100.
Ranks in the top 100% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“This whole-genome shotgun project has been deposited at DDBJ/ENA/GenBank under the accession number JAFNAA000000000 .”
The paper provides a GenBank accession number (JAFNAA000000000), which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“This whole-genome shotgun project has been deposited at DDBJ/ENA/GenBank under the accession number JAFNAA000000000 .”
The paper names DDBJ/ENA/GenBank, a recognised data repository, as the holder of the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Data availability. This whole-genome shotgun project has been deposited at DDBJ/ENA/GenBank under the accession number JAFNAA000000000 . The version described in this paper is version JAFNAA010000000 . The raw sequence reads are deposited at the Sequence Read Archive under number SRP357730 .”
The dataset identifiers appear only in the body text (data-availability statement), not in the reference list. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. This whole-genome shotgun project has been deposited at DDBJ/ENA/GenBank under the accession number JAFNAA000000000 . The version described in this paper is version JAFNAA010000000 . The raw sequence reads are deposited at the Sequence Read Archive under number SRP357730 .”
The data-availability statement points to public repositories with accession numbers, fitting Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The genome consists of 115 contigs (>500 bp) and has a total assembly length of 4,041,537 bases.”— not found in the paper; verdict downgraded
The dataset is described in running prose only, with no itemised inventory, section, table, or enumerated list. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The raw sequence reads are deposited at the Sequence Read Archive under number SRP357730 .”
The data are deposited in public repositories (GenBank, SRA) with no stated precondition for access. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The raw sequence reads are deposited at the Sequence Read Archive under number SRP357730 .”
The paper describes the access action of deposition in repositories but does not explicitly label the access level as 'open access' or 'publicly available' for the data. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are a bacterial genome sequence, not sensitive or human-subject data, and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will remain available or any retention commitment.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token (e.g., FASTA, FASTQ) is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, MINSEQE, an ontology) is named as applied to the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GenBank version number NR_117763.1”
The paper provides identifiers for external resources used, such as GenBank accession NR_117763.1 and GCA_900087055.1.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is named for the data; the article's CC-BY licence does not apply to the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The version described in this paper is version JAFNAA010000000 .”
The paper explicitly states a version token (JAFNAA010000000) for the genome assembly.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Workflow with parameters is available at https://github.com/chrisgaulke/zfcc .”
The paper provides a machine-resolvable code repository URL (GitHub) for the workflow.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“an NSF DEB award (1557192)”
The paper lists specific grant numbers (e.g., NSF DEB 1557192, NIH 1R01ES030226) attached to named funders. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Bacterial DNA was isolated from this pure culture using the UltraClean microbial DNA isolation kit (Qiagen)”
The paper names specific instruments, kits, and software (e.g., UltraClean kit, MiSeq, SPAdes v3.1.1) used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is named as travelling with the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
National Science Foundation
Grant: 1557192
Using Phylogenetic Structure to Clarify the Evolutionary Ecological Distribution of Microorganisms
HHS | National Institutes of Health
Grant: 1R01ES030226
HHS | NIH | Office of Research Infrastructure Programs, National Institutes of Health
Grant: R24OD010998
NIEHS NIH HHS
Grant: R01 ES030226
National Institutes of Health
Grant: 3R24OD010998-16S1
Control and Impacts of Disease of Zebrafish in Research Facilities
National Institutes of Health
Grant: 5R01ES030226-04
Impacts of Benzo[a]pyrene on Microbiome Development across Lifespan and Generations and the Behavioral Consequences
UofI | University of Illinois at Urbana-Champaign (UIUC)
UofI | University of Illinois at Urbana-Champaign
Oregon State University (OSU)
Oregon State University
Oregon State University (OSU)
UofI | University of Illinois at Urbana-Champaign (UIUC)
FWCI
0.00
Citation Percentile
0.0%
Fields of Study
Keywords
Sustainable Development Goals