Xiaowei Zhuang

Also affiliated with Harvard University, Harvard University Press

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

17.5Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Molecularly defined and spatially resolved cell atlas of the whole mouse brain

Nature(2023)10.1038/s41586-023-06808-9

Top 5%

4.8DataRank

Top 5%484 citations

Xingjie Pan, Won Jung, Aaron R. Halpern, Stephen W. Eichhorn, Zhiyun Lei +7 more

Papers

Driven by 43 papers — median percentile 90. Top paper: “Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells”.

Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells

Science(2018)10.1126/science.aau1783

N/A

10.1DataRank · unranked

1078 citations

Leslie J. Mateo, Jun-Han Su, Nicholas A. Sinnott-Armstrong, Mirae Baichoo, Seon Kinrot +4 more

Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin

Cell(2020)10.1016/j.cell.2020.07.032

N/A

8.4DataRank · unranked

627 citations

Pu Zheng, Seon Kinrot, Bogdan Bintu, Xiaowei Zhuang, Jun-Han Su

High-content CRISPR screening

Nature Reviews Methods Primers(2022)10.1038/s43586-022-00098-7

N/A

6.0DataRank · unranked

255 citations

Paul Datlinger, Florence M. Chardon, Matthew A. Coelho, Matthew B. Dong, Keith A. Lawson +15 more

Molecularly defined and spatially resolved cell atlas of the whole mouse brain

Nature(2023)10.1038/s41586-023-06808-9

Top 5%

4.8DataRank

Top 5%484 citations

Xingjie Pan, Won Jung, Aaron R. Halpern, Stephen W. Eichhorn, Zhiyun Lei +7 more

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0

Top 5%

4.3DataRank

Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

The Human Cell Atlas White Paper

arXiv (Cornell University)(2018)10.17863/cam.40032

Top 10%

2.2DataRank

Top 10%41 citations

Sarah A. Teichmann, Orit Rozenblatt‐Rosen, Michael J. T. Stubbington, Kristin G. Ardlie, Ido Amit +76 more

A molecularly defined and spatially resolved cell atlas of the whole mouse brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.06.531348

Top 10%

2.1DataRank

Top 10%69 citations

Xingjie Pan, Won Jung, Aaron R. Halpern, Stephen W. Eichhorn, Zhiyun Lei +7 more

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.272831

Top 11%

1.9DataRank

Top 11%36 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +15 more

Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)

Nature Methods(2006)10.1038/nmeth929

N/A

1.4DataRank · unranked

8197 citations

Mark Bates, Xiaowei Zhuang, Michael J. Rust

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2024)10.1038/s41591-024-03215-z

Top 15%

1.3DataRank

Top 15%91 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region

Science(2018)10.1126/science.aau5324

N/A

1.1DataRank · unranked

1485 citations

Dhananjay Bambah-Mukku, Stephen W. Eichhorn, Eric Vaughn, Karthik Shekhar, Julio D. Perez +6 more

Three-dimensional single-cell transcriptome imaging of thick tissues

eLife(2023)10.7554/elife.90029

N/A

1.0DataRank · unranked

51 citations

Aaron R. Halpern, Mohammed Mostafizur Rahman, Zhengkai Huang, Zhiyun Lei, Sebastian J Hell +3 more

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

Nature Methods(2021)10.1038/s41592-021-01264-7

N/A

1.0DataRank · unranked

856 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +17 more

Interactions between cancer cells and immune cells drive transitions to mesenchymal-like states in glioblastoma

Cancer Cell(2021)10.1016/j.ccell.2021.05.002

N/A

0.953DataRank · unranked

575 citations

Rony Chanoch-Myers, Nathan D. Mathewson, Chad Myskiw, Lyla Atta, Lillian Bussema +17 more

Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems

Science(2021)10.1126/science.aax2656

N/A

0.902DataRank · unranked

408 citations

Daniel R. Goodwin, Anubhav Sinha, Asmamaw T. Wassie, Fei Chen, Evan R. Daugharthy +164 more

The commitment of the human cell atlas to humanity

Nature Communications(2024)10.1038/s41467-024-54306-x

Top 24%

0.847DataRank

Top 24%20 citations

Kristin G. Ardlie, Fabiana Arzuaga, Gordon A. Awandare, Samirkumar B. Amin, Alexander Bernier +38 more

Decoding molecular and cellular heterogeneity of mouse nucleus accumbens

Nature Neuroscience(2021)10.1038/s41593-021-00938-x

N/A

0.809DataRank · unranked

219 citations

Timothy R. Blosser, Mohamed Nadhir Djekidel, Junjie Hao, Aritra Bhattacherjee, Wenqiang Chen +4 more

Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities

Genome Research(2021)10.1101/gr.271288.120

N/A

0.801DataRank · unranked

207 citations

Dhananjay Bambah-Mukku, Catherine Dulac, Xiaowei Zhuang, Jean Fan, Brendan Miller

Cell-type-specific 3D-genome organization and transcription regulation in the brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.570024

N/A

0.385DataRank · unranked

12 citations

Pu Zheng, Cosmos Yuqi Wang, Bojing Blair Jia, Nathan R. Zemke, Bing Ren +2 more

Spatially resolved epigenomic profiling of single cells in complex tissues

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2022.02.17.480825

N/A

0.372DataRank · unranked

6 citations

Cheen Euong Ang, Xiaowei Zhuang, Tian Lu

Conservation and divergence in cortical cellular organization between human and mouse revealed by single-cell transcriptome imaging

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.01.466826

N/A

0.292DataRank · unranked

6 citations

Chenglong Xia, Meng Zhang, Jiang He, Jennie Close, Brian Long +4 more

Voices in methods development

Nature Methods(2019)10.1038/s41592-019-0585-6

N/A

0.269DataRank · unranked

5 citations

Rosalind Mott Firenze, Clifford Brangwynne, Ibrahim I. Cissé, Oliver Fiehn, Petra Fromme +44 more

High-resolution spatial mapping of cell state and lineage dynamics in vivo with PEtracer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.15.659774

N/A

0.208DataRank · unranked

3 citations

Kathryn E. Yost, Pu Zheng, William N. Colgan, Matthew G. Jones, Dian Yang +11 more

Interactions between cancer cells and immune cells drive transitions to mesenchymal-like states in glioblastoma

Cancer Cell(2025)10.1016/j.ccell.2025.05.007

N/A

0.110DataRank · unranked

1 citations

Rony Chanoch-Myers, Nathan D. Mathewson, Chad Myskiw, Lyla Atta, Lillian Bussema +17 more

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2025)10.1038/s41591-025-03665-z

N/A

0.104DataRank · unranked

1 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Inference of single cell profiles from histology stains with the Single Cell omics from Histology Analysis Framework (SCHAF)

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.21.533680

N/A

0DataRank · unranked

36 citations

Xingjian Chen, Eeshit Dhaval Vaishnav, Koseki J. Kobayashi-Kirschvink, Metamia Ciampricotti, Ke Zhang +30 more

OTME-7. Cancer - immune cell interactions drive transitions to mesenchymal-like state in glioblastoma

Neuro-Oncology Advances(2021)10.1093/noajnl/vdab070.058

N/A

0DataRank · unranked

0 citations

Rony Chanoch-Myers, Chad Myskiw, Lyla Atta, Lillian Bussema, Gabriela S. Kinker +17 more

TAMI-12. CANCER-IMMUNE CELL INTERACTIONS DRIVE TRANSITIONS TO MESENCHYMAL-LIKE STATES IN GLIOBLASTOMA

Neuro-Oncology(2021)10.1093/neuonc/noab196.796

N/A

0DataRank · unranked

0 citations

Rony Chanoch-Myers, Chad Myskiw, Lyla Atta, Lillian Bussema, Alissa Greenwald +17 more

HTAPP_Designing gene panels for neuroblastoma targeted spatial transcriptomics assays v1

(2021)10.17504/protocols.io.bw86phze

N/A

0DataRank · unranked

0 citations

Orr Ashenberg, Anand G. Patel, Natalie Collins, Xiaowei Zhuang, Orit Rozenblatt–Rosen +6 more

m6A-binding YTHDF proteins promote stress granule formation

Nature Chemical Biology(2020)10.1038/s41589-020-0524-y

N/A

0DataRank · unranked

359 citations

Xiaowei Zhuang, Ye Fu

Lamina-Dependent Stretching and Unconventional Chromosome Compartments in Early C. elegans Embryos

Molecular Cell(2020)10.1016/j.molcel.2020.02.006

N/A

0DataRank · unranked

72 citations

Maxwell E. R. Shafer, Jun-Han Su, Xiaowei Zhuang, Siyuan Wang, Susan E. Mango +1 more

Spatial organization of the transcriptome in individual neurons

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.07.414060

N/A

0DataRank · unranked

36 citations

Cheen Euong Ang, Jean Fan, Andrew Wang, Jeffrey R. Moffitt, Xiaowei Zhuang +1 more

Proteomic and functional analyses of the periodic membrane skeleton in neurons

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.23.424206

N/A

0DataRank · unranked

10 citations

Boran Han, Roberta B. Nowak, Yunzhe Lu, Evan Heller, Chenglong Xia +4 more

Two Distinct Binding Modes of a Protein Cofactor with its Target RNA

UNC Libraries(2020)10.17615/8tw1-e460

N/A

0DataRank · unranked

0 citations

Shixin Liu, Kevin M. Weeks, Xiaowei Zhuang, Lucas G. Nivón, Geqing Chai +2 more

Spatially resolved single-cell genomics and transcriptomics by imaging

Nature Methods(2021)10.1038/s41592-020-01037-8

N/A

0DataRank · unranked

264 citations

Xiaowei Zhuang

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment

Nature Cancer(2021)10.1038/s43018-021-00301-w

N/A

0DataRank · unranked

221 citations

Raúl Catena, Alaz Özcan, Alex Plüss, H. Raza Ali, M. Al Sa’d +74 more

CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains

Nature Genetics(2021)10.1038/s41588-021-00863-6

N/A

0DataRank · unranked

198 citations

Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern +13 more

Tetra-gel enables superior accuracy in combined super-resolution imaging and expansion microscopy

Scientific Reports(2021)10.1038/s41598-021-96258-y

N/A

0DataRank · unranked

28 citations

Chih-Chieh (Jay) Yu, Edward S. Boyden, Xiaowei Zhuang, Pallav Kosuri, Hsuan Lee

Decoding molecular and cellular heterogeneity of nucleus accumbens with high-throughput scRNA-seq and MERFISH

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.17.452808

N/A

0DataRank · unranked

4 citations

Timothy R. Blosser, Mohamed Nadhir Djekidel, Junjie Hao, Aritra Bhattacherjee, Wenqiang Chen +4 more

Spatially resolved epigenomic profiling of single cells in complex tissues

Cell(2022)10.1016/j.cell.2022.09.035

N/A

0DataRank · unranked

193 citations

Cheen Euong Ang, Xiaowei Zhuang, Tian Lu

Proteomic and functional analyses of the periodic membrane skeleton in neurons

Nature Communications(2022)10.1038/s41467-022-30720-x

N/A

0DataRank · unranked

66 citations

Boran Han, Roberta B. Nowak, Yunzhe Lu, Evan Heller, Chenglong Xia +4 more

Three-dimensional single-cell transcriptome imaging of thick tissues

eLife(2024)10.7554/elife.90029.3

N/A

0DataRank · unranked

4 citations

Aaron R. Halpern, Mohammed Mostafizur Rahman, Zhengkai Huang, Zhiyun Lei, Sebastian J Hell +3 more

Perturb-Multimodal: A platform for pooled genetic screens with imaging and sequencing in intact mammalian tissue

Cell(2025)10.1016/j.cell.2025.05.022

N/A

0DataRank · unranked

46 citations

William E. Allen, Xingjie Pan, Jaspreet Sandhu, Jiaqi Lu, Thomas K. Lau +6 more

Xiaowei Zhuang

Indexed papers

Top data-sharing exemplar

Papers