Peter V. Kharchenko

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

32.6Author DataRank

Indexed papers

11in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

Nature(2010)10.1038/nature09725

Top 2%

8.1DataRank

Top 2%911 citations

Sebastian Will, Yuri B. Schwartz, Aki Minoda, Nicole C. Riddle, Jason Ernst +28 more

Papers

Driven by 49 papers — median percentile 93. Top paper: “Joint analysis of heterogeneous single-cell RNA-seq dataset collections”.

Joint analysis of heterogeneous single-cell RNA-seq dataset collections

Nature Methods(2019)10.1038/s41592-019-0466-z

N/A

9.6DataRank · unranked

346 citations

Viktor Petukhov, Daria Nikolaeva, Yaroslav Lozinsky, Samuel Demharter, Konstantin Khodosevich +2 more

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

Nature(2010)10.1038/nature09725

Top 2%

8.1DataRank

Top 2%911 citations

Sebastian Will, Yuri B. Schwartz, Aki Minoda, Nicole C. Riddle, Jason Ernst +28 more

Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses

Nature Communications(2023)10.1038/s41467-023-36325-2

N/A

5.9DataRank · unranked

257 citations

Shenglin Mei, Hirak Sarkar, Youmna Kfoury, Shulin Wu, Bronte Manouk Verhoeven +15 more

Cell type ontologies of the Human Cell Atlas

Nature Cell Biology(2021)10.1038/s41556-021-00787-7

Top 5%

4.6DataRank

Top 5%128 citations

Chuan Xu, Maria Keays, Adam P. Levine, Peter V. Kharchenko, Aviv Regev +3 more

Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis

Nature Communications(2020)10.1038/s41467-020-18752-7

N/A

4.6DataRank · unranked

236 citations

Viktor Petukhov, Samuel Demharter, Johanna Meichsner, Jonatan J. Thompson, Mykhailo Y. Batiuk +11 more

An atlas of healthy and injured cell states and niches in the human kidney

Nature(2023)10.1038/s41586-023-05769-3

Top 5%

4.4DataRank

Top 5%663 citations

Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor +95 more

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0

Top 5%

4.3DataRank

Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03500-8

Top 5%

4.2DataRank

Top 5%389 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew I. Aldridge +81 more

Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes

Nature Biotechnology(2022)10.1038/s41587-022-01468-y

N/A

3.6DataRank · unranked

171 citations

Ruslan Soldatov, Hirak Sarkar, Adam Kurkiewicz, Evan Biederstedt, Po‐Ru Loh +2 more

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Science(2010)10.1126/science.1198374

Top 9%

2.4DataRank

Top 9%1089 citations

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Yanxiao Zhang, Richard S. Sandstrom +172 more

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.016972

N/A

2.4DataRank · unranked

90 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +99 more

The immune cell atlas of human neuroblastoma

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100657

Top 10%

2.1DataRank

Top 10%101 citations

Shenglin Mei, Thale Kristin Olsen, Karin Gustafsson, Anders Valind, Axel Lindström +8 more

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.29.970558

Top 13%

1.6DataRank

Top 13%63 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S. Adkins +78 more

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Genome Research(2012)10.1101/gr.136184.111

N/A

1.2DataRank · unranked

2212 citations

Georgi K. Marinov, Anshul Kundaje, Yanxiao Zhang, Florencia Pauli, Serafim Batzoglou +46 more

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2021)10.1038/s41586-021-03465-8

N/A

1.0DataRank · unranked

818 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +101 more

Cell segmentation in imaging-based spatial transcriptomics

Nature Biotechnology(2021)10.1038/s41587-021-01044-w

N/A

0.911DataRank · unranked

434 citations

Rosalind J. Xu, Ruslan Soldatov, Paolo Cadinu, Konstantin Khodosevich, Jeffrey R. Moffitt +2 more

Comparative analysis of metazoan chromatin organization

Nature(2014)10.1038/nature13415

N/A

0.910DataRank · unranked

429 citations

Youngsook L. Jung, Tao Liu, Burak H. Alver, Soohyun Lee, Kohta Ikegami +83 more

RNA velocity—current challenges and future perspectives

Molecular Systems Biology(2021)10.15252/msb.202110282

N/A

0.857DataRank · unranked

301 citations

Ruslan A Soldatov, Peter V. Kharchenko, Fabian Joachim Theis, Ruslan Soldatov, Volker Bergen

Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth

Nature Communications(2020)10.1038/s41467-020-18512-7

N/A

0.834DataRank · unranked

259 citations

Ruslan Soldatov, Maria Eleni Kastriti, Tatiana Chontorotzea, Anna Nele Herdina, Julian Petersen +21 more

Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions

Neuron(2021)10.1016/j.neuron.2021.08.005

N/A

0.803DataRank · unranked

210 citations

Andrew B. Stergachis, Ellen M. DeGennaro, Ryan N. Doan, Xuyu Qian, Matthew B. Johnson +20 more

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect

Science Translational Medicine(2020)10.1126/scitranslmed.abb7661

N/A

0.705DataRank · unranked

24 citations

Christina Ennis, Vinhkhang N. Nguyen, Satyen H. Gohil, Kendell Clement, Sachet A. Shukla +22 more

A pan-tissue survey of mosaic chromosomal alterations in 948 individuals

Nature Genetics(2023)10.1038/s41588-023-01537-1

Top 29%

0.690DataRank

Top 29%17 citations

Maria Eleni Kastriti, Viktor Ljungström, Andreas Heinzel, Arthur S. Tischler, Rainer Oberbauer +5 more

A transcriptional metastatic signature predicts survival in clear cell renal cell carcinoma

Nature Communications(2022)10.1038/s41467-022-33375-w

N/A

0.673DataRank · unranked

88 citations

Shenglin Mei, Ιωάννα Τσέα, Taghreed Hirz, Youmna Kfoury, Douglas M. Dahl +10 more

Population sequencing data reveal a compendium of mutational processes in the human germ line

Science(2021)10.1126/science.aba7408

N/A

0.648DataRank · unranked

74 citations

Ruslan Soldatov, Evan M. Koch, Ryan J. McGinty, Jakob M. Goldmann, Ryan D. Hernandez +38 more

ZNF683 marks a CD8+ T cell population associated with anti-tumor immunity following anti-PD-1 therapy for Richter syndrome

Cancer Cell(2023)10.1016/j.ccell.2023.08.013

N/A

0.646DataRank · unranked

73 citations

Camilla K. Lemvigh, Stephanie L. Deng, Nathan Dangle, Neil Ruthen, Binyamin A. Knisbacher +30 more

Vitessce: integrative visualization of multimodal and spatially resolved single-cell data

Nature Methods(2024)10.1038/s41592-024-02436-x

N/A

0.624DataRank · unranked

63 citations

Ilan Gold, Chuck McCallum, Trevor Manz, Peter V. Kharchenko, Nils Gehlenborg +1 more

Case-control analysis of single-cell RNA-seq studies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.15.484475

N/A

0.604DataRank · unranked

55 citations

Anna A. Igolkina, Rasmus Rydbirk, Shenglin Mei, Lars Christoffersen, Konstantin Khodosevich +2 more

Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data

OSF Preprints (OSF Preprints)(2021)10.31219/osf.io/y8thv

N/A

0.553DataRank · unranked

39 citations

Ilan Gold, Chuck McCallum, Trevor Manz, Peter V. Kharchenko, Nils Gehlenborg +1 more

Mapping human tissues with highly multiplexed RNA in situ hybridization

Nature Communications(2024)10.1038/s41467-024-46437-y

N/A

0.542DataRank · unranked

36 citations

Chien-Ju Chen, Ho Suk Lee, Matthew Cai, Mahsa Nafisi, Richard Que +16 more

Gene panel selection for targeted spatial transcriptomics

Genome biology(2024)10.1186/s13059-024-03174-1

N/A

0.464DataRank · unranked

21 citations

Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V. Kharchenko +1 more

Selective vulnerability of supragranular layer neurons in schizophrenia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.17.386458

N/A

0.373DataRank · unranked

11 citations

Teadora Tyler, Shenglin Mei, Rasmus Rydbirk, Viktor Petukhov, Dora Sedmak +12 more

Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2022)10.1038/s41586-022-04562-y

N/A

0.317DataRank · unranked

5 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +104 more

Gene panel selection for targeted spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.03.527053

N/A

0.221DataRank · unranked

3 citations

Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V. Kharchenko +1 more

Integrated single-cell and spatial transcriptomic analyses unravel the heterogeneity of the prostate tumor microenvironment

Research Square(2022)10.21203/rs.3.rs-1489967/v1

N/A

0.165DataRank · unranked

2 citations

Shenglin Mei, Hirak Sarkar, Youmna Kfoury, Shulin Wu, Bronte Manouk Verhoeven +15 more

Myeloid-biased HSC require Semaphorin 4A from the bone marrow niche for self-renewal under stress and life-long persistence

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.12.476097

N/A

0.137DataRank · unranked

1 citations

Sharon Zeng, Elmir Mahammadov, Edie I. Crosse, Negar Seyedhassantehrani, Christian Burns +21 more

Integrated single-cell and spatial transcriptomic analyses unravel the heterogeneity of the prostate tumor microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.18.484781

N/A

0.104DataRank · unranked

1 citations

Shenglin Mei, Hirak Sarkar, Youmna Kfoury, Shulin Wu, Bronte Manouk Verhoeven +15 more

Single-cell multiomic human brain atlas reveals regulatory drivers of cortical regionality

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.667992

Top 78%

0.104DataRank

Top 78%1 citations

Jinghui Song, Bing Yang, Chien-Ju Chen, Dinh Diep, Kimberly Y. Conklin +17 more

A new transcriptional metastatic signature predicts survival in clear cell renal cell carcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.28.497333

N/A

0DataRank · unranked

0 citations

Shenglin Mei, Ιωάννα Τσέα, Taghreed Hirz, Youmna Kfoury, Douglas M. Dahl +10 more

Single-nuclei transcriptomes from human adrenal gland reveals distinct cellular identities of low and high-risk neuroblastoma tumors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437162

N/A

0DataRank · unranked

3 citations

Wenyu Li, Maria Arceo, Monika Plescher, Petra Bullova, Han‐Pin Pui +11 more

Single-nuclei transcriptomes from human adrenal gland reveal distinct cellular identities of low and high-risk neuroblastoma tumors

Nature Communications(2021)10.1038/s41467-021-24870-7

N/A

0DataRank · unranked

99 citations

Wenyu Li, Maria Arceo, Monika Plescher, Petra Bullova, Han‐Pin Pui +11 more

Human prostate cancer bone metastases have an actionable immunosuppressive microenvironment

Cancer Cell(2021)10.1016/j.ccell.2021.09.005

N/A

0DataRank · unranked

282 citations

Ninib Baryawno, Nicolas Sévère, Shenglin Mei, Karin Gustafsson, Taghreed Hirz +13 more

An assessment of histone-modification antibody quality

UNC Libraries(2020)10.17615/g8he-ng31

N/A

0DataRank · unranked

0 citations

Mitzi I. Kuroda, Andrey A. Gorchakov, Andreas Rechtsteiner, Peter V. Kharchenko, Daniel S. Day +27 more

Image-seq: spatially resolved single-cell sequencing guided by in situ and in vivo imaging

Nature Methods(2022)10.1038/s41592-022-01673-2

N/A

0DataRank · unranked

36 citations

Karin Gustafsson, Shenglin Mei, Shu-Chi Yeh, Dmitry Richter, Jelena Milosevic +6 more

Single-cell analysis reveals immune dysfunction from the earliest stages of CLL that can be reversed by ibrutinib

Blood(2022)10.1182/blood.2021013926

N/A

0DataRank · unranked

18 citations

Yuzhou Evelyn Tong, Camilla K. Lemvigh, Nicoletta Cieri, Shuqiang Li, Erin M. Parry +17 more

Diversity of developing peripheral glia revealed by single-cell RNA sequencing

Developmental Cell(2021)10.1016/j.devcel.2021.08.005

N/A

0DataRank · unranked

90 citations

Noah R. Druckenbrod, Olubusola Olukoya, Weixiu Dong, Andrea R. Yung, Isle Bastille +9 more

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to graft-versus-leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.09.033555

N/A

0DataRank · unranked

0 citations

Christina Ennis, Vinhkhang N. Nguyen, Kendell Clement, Satyen H. Gohil, Sachet A. Shukla +20 more

Diversity of developing peripheral glia revealed by single cell RNA sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.04.411975

N/A

0DataRank · unranked

7 citations

N. R. Druckenbrod, Olubusola Olukoya, AR Yung, Isle Bastille, MF Pazyra-Murphy +8 more

Dissection of gastric homeostasis in vivo facilitates permanent capture of isthmus-like stem cells in vitro

Nature Cell Biology(2023)10.1038/s41556-022-01079-4

N/A

0DataRank · unranked

19 citations

Rebecca A. Gorelov, Ruslan Deviatiiarov, Samuel Demharter, Tobías Kull, Ryan Walsh +6 more

Mapping Human Tissues with Highly Multiplexed RNA in situ Hybridization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.16.553610

N/A

0DataRank · unranked

4 citations

Chien-Ju Chen, Ho Suk Lee, Matthew Cai, Mahsa Nafisi, Richard Que +15 more

Peter V. Kharchenko

Indexed papers

Top data-sharing exemplar

Papers