Jay R. Hesselberth

University of Colorado Anschutz Medical Campus

Also affiliated with University of Colorado Denver

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

0.933Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cell-level metadata are indispensable for documenting single-cell sequencing datasets

PLoS Biology(2021)10.1371/journal.pbio.3001077

Top 22%

0.933DataRank

Top 22%16 citations

Jay R. Hesselberth, Kent Riemondy, Rui Fu, Sidhant Puntambekar

Papers

Driven by 39 papers — median percentile 78. Top paper: “clustifyr: an R package for automated single-cell RNA sequencing cluster classification”.

clustifyr: an R package for automated single-cell RNA sequencing cluster classification

F1000Research(2020)10.12688/f1000research.22969.2

N/A

3.5DataRank · unranked

134 citations

Austin E. Gillen, Ryan M. Sheridan, Chengzhe Tian, Michelle Daya, Yue Hao +3 more

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

Nature Methods(2009)10.1038/nmeth.1313

N/A

0.956DataRank · unranked

584 citations

Xiaoyu Chen, Zhihong Zhang, Peter J. Sabo, Richard Sandstrom, Alex P. Reynolds +10 more

Cell-level metadata are indispensable for documenting single-cell sequencing datasets

PLoS Biology(2021)10.1371/journal.pbio.3001077

Top 22%

0.933DataRank

Top 22%16 citations

Jay R. Hesselberth, Kent Riemondy, Rui Fu, Sidhant Puntambekar

Molecular tracking devices quantify antigen distribution and archiving in the murine lymph node

eLife(2021)10.7554/elife.62781

N/A

0.773DataRank · unranked

30 citations

Ryan M. Sheridan, Erin D. Lucas, Thu A. Doan, Brian C. Ware, Johnathon Schafer +5 more

B cells shape naive CD8+ T cell programming

Journal of Clinical Investigation(2025)10.1172/jci190106

N/A

0.165DataRank · unranked

2 citations

Miguel Guerrero Moreno, Jennifer Cimons, Marc D’Antonio, Tonya M. Brunetti, Michael Harbell +12 more

Chikungunya virus infection disrupts lymph node lymphatic endothelial cell composition and function via MARCO

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.12.561615

N/A

0.104DataRank · unranked

1 citations

Ryan M. Sheridan, Glennys V. Reynoso, Bennett Davenport, Mary K. McCarthy, Aspen Martin +5 more

Neoplastic and immune single cell transcriptomics define subgroup-specific intra-tumoral heterogeneity of childhood medulloblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.28.272021

N/A

0DataRank · unranked

12 citations

Sujatha Venkataraman, Nicholas Willard, Anandani Nellan, Bridget Sanford, Andrea M. Griesinger +16 more

Physiologic RNA Targets and Refined Sequence Specificity of Coronavirus EndoU

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.20.064436

N/A

0DataRank · unranked

4 citations

Yize Li, Eveline Kindler, Daphne Cooper, Monica Ransom, Volker Thiel +4 more

Engineering degradation-resistant messenger RNAs in yeast

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.25.169177

N/A

0DataRank · unranked

2 citations

Andrea MacFadden, Jeffrey Scott Kieft, Jay R. Hesselberth, Erich G. Chapman, Ana Luisa Franklin

Molecular tracking devices quantify antigen distribution and archiving in the lymph node

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.19.219527

N/A

0DataRank · unranked

0 citations

Ryan M. Sheridan, Thu Minh Doan, Erin D. Lucas, Brian C. Ware, Rui Fu +4 more

Neoplastic and immune single-cell transcriptomics define subgroup-specific intra-tumoral heterogeneity of childhood medulloblastoma

Neuro-Oncology(2021)10.1093/neuonc/noab135

N/A

0DataRank · unranked

144 citations

Sujatha Venkataraman, Nicholas Willard, Anandani Nellan, Bridget Sanford, Andrea M. Griesinger +16 more

Dynamic RNA Regulation in the Brain Underlies Physiological Plasticity in a Hibernating Mammal

Frontiers in Physiology(2021)10.3389/fphys.2020.624677

N/A

0DataRank · unranked

27 citations

Austin E. Gillen, Katharine R. Grabek, Kent Riemondy, L. Elaine Epperson, Carlos D. Bustamante +3 more

MARCO + lymphatic endothelial cells sequester arboviruses to limit viremia and viral dissemination

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447957

N/A

0DataRank · unranked

0 citations

Ryan M. Sheridan, Cormac J. Lucas, Bennett Davenport, Frances S. Li, Erin D. Lucas +8 more

Modification mapping by nanopore sequencing

Frontiers in Genetics(2022)10.3389/fgene.2022.1037134

N/A

0DataRank · unranked

59 citations

Jay R. Hesselberth, Laura K. White

Direct detection of RNA repair by nanopore sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.29.493267

N/A

0DataRank · unranked

2 citations

Saylor M. Strugar, Andrea MacFadden, Jay R. Hesselberth, Laura K. White

Nanopore sequencing of internal 2′-PO4modifications installed by RNA repair

RNA(2023)10.1261/rna.079290.122

N/A

0DataRank · unranked

18 citations

Saylor M. Strugar, Andrea MacFadden, Jay R. Hesselberth, Laura K. White

Vaccine adjuvant-elicited CD8+ T cell immunity is co-dependent on T-bet and FOXO1

Cell Reports(2023)10.1016/j.celrep.2023.112911

N/A

0DataRank · unranked

17 citations

Scott B. Thompson, Jared Klarquist, Michael Harbell, Augustus M. Kilgore, Erika Lasda +4 more

Co-regulator activity of Mediator of DNA Damage Checkpoint 1 (MDC1) is associated with DNA repair dysfunction and PARP inhibitor sensitivity in lobular carcinoma of the breast

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.564555

N/A

0DataRank · unranked

3 citations

Madeleine T. Shackleford, Camryn S. Nesiba, Amanda L. Richer, Zoë Fleischmann, Jordan M. Swartz +11 more

Chikungunya virus infection disrupts lymph node lymphatic endothelial cell composition and function via MARCO

JCI Insight(2024)10.1172/jci.insight.176537

N/A

0DataRank · unranked

10 citations

Ryan M. Sheridan, Glennys V. Reynoso, Bennett Davenport, Mary K. McCarthy, Aspen Martin +5 more

Immunization-induced antigen archiving enhances local memory CD8+ T cell responses following an unrelated viral infection

npj Vaccines(2024)10.1038/s41541-024-00856-6

N/A

0DataRank · unranked

8 citations

Tadg Forward, Johnathon Schafer, Erin D. Lucas, Ira Fleming, Aspen Uecker-Martin +6 more

Comparative analysis of 43 distinct RNA modifications by nanopore tRNA sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.23.604651

N/A

0DataRank · unranked

30 citations

Kezia Dobson, Samantha del Pozo, Jill M. Bilodeaux, Shelby E. Andersen, Amber Baldwin +8 more

Nanopore sequencing of intact aminoacylated tRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.18.623114

N/A

0DataRank · unranked

4 citations

Aleksandar Radakovic, Marcin Piotr Sajek, Kezia Dobson, Kent Riemondy, Samantha del Pozo +3 more

Systematic analysis of nonsense variants uncovers peptide release rate as a novel modifier of nonsense-mediated mRNA decay

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.10.575080

N/A

0DataRank · unranked

2 citations

Rui Fu, Nikita Biziaev, Alexey Shuvalov, Mlana Lore, Amy E. Campbell +8 more

A specific and portable gene expression program underlies antigen archiving by lymphatic endothelial cells

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.01.587647

N/A

0DataRank · unranked

1 citations

Thu A. Doan, Cormac J. Lucas, Tadg Forward, Aspen Uecker-Martin, Thomas E. Morrison +3 more

A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes

Research Square(2024)10.21203/rs.3.rs-5493746/v1

N/A

0DataRank · unranked

0 citations

Ryan M. Sheridan, Thu Minh Doan, Cormac J. Lucas, Tadg Forward, Ira Fleming +4 more

Nanopore sequencing of intact aminoacylated tRNAs

Nature Communications(2025)10.1038/s41467-025-62545-9

N/A

0DataRank · unranked

13 citations

Aleksandar Radakovic, Marcin Piotr Sajek, Kezia Dobson, Kent Riemondy, Samantha del Pozo +3 more

Systematic analysis of nonsense variants uncovers peptide release rate as a novel modifier of nonsense-mediated mRNA decay

Cell Genomics(2025)10.1016/j.xgen.2025.100882

N/A

0DataRank · unranked

8 citations

Rui Fu, Nikita Biziaev, Alexey Shuvalov, Mlana Lore, Amy E. Campbell +8 more

Activated polyreactive B cells are clonally expanded in autoantibody positive and patients with recent-onset type 1 diabetes

Cell Reports(2025)10.1016/j.celrep.2025.115425

N/A

0DataRank · unranked

7 citations

Fatima Tensun, Spencer A. Evans, Kevin P. Toole, Jessica E. Lee, Hali Broncucia +5 more

A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes

Nature Communications(2025)10.1038/s41467-025-63543-7

N/A

0DataRank · unranked

2 citations

Thu A. Doan, Cormac J. Lucas, Tadg Forward, Ira Fleming, Valerie M. Olsen +9 more

Systematic identification and characterization of eukaryotic and viral 2A peptide-bond-skipping sequences

Cell Reports(2025)10.1016/j.celrep.2025.115822

N/A

0DataRank · unranked

3 citations

Emma R. Horton, Chloe Barrington, Chloe A. Briney, Jesslyn C. Henriksen, Federico Martínez-Seidel +8 more

Chikungunya virus persists in joint associated macrophages and promotes chronic disease

Research Square(2025)10.21203/rs.3.rs-6917990/v1

N/A

0DataRank · unranked

10 citations

Kristen Zarrella, Ryan M. Sheridan, Brian C. Ware, Bennett Davenport, Mariana da Silva +8 more

Serine recombinases are conserved genetic markers of antiphage defense systems

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.07.681051

N/A

0DataRank · unranked

1 citations

Joshua M. Kirsch, Navtej Singh, S Garrett, John C. Whitney, Jay R. Hesselberth +2 more

Big1 is a cell cycle regulator linking cell size to basal body number

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.24.666660

N/A

0DataRank · unranked

0 citations

Adam W. J. Soh, Lisa E. Mitchell, Huangqingbo Sun, E. Collet, Gayatri Dholakia +7 more

Splice-switching antisense oligonucleotides correct cryptic exon inclusion and restore SDCCAG8 protein in Bardet-Biedl Syndrome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.15.682674

N/A

0DataRank · unranked

0 citations

Bailey L McCurdy, Austin Larson, Emily A. McCourt, Michael L. Kaufman, Amy E. Campbell +6 more

Single-Cell RNA Sequencing of Childhood Ependymoma Reveals Neoplastic Cell Subpopulations That Impact Molecular Classification and Etiology

Cell Reports(2020)10.1016/j.celrep.2020.108023

N/A

0DataRank · unranked

101 citations

Kent Riemondy, Vladimir Amani, Andrea M. Griesinger, Ahmed Gilani, Sujatha Venkataraman +12 more

clustifyr: an R package for automated single-cell RNA sequencing cluster classification

F1000Research(2020)10.12688/f1000research.22969.1

N/A

0DataRank · unranked

74 citations

Austin E. Gillen, Ryan M. Sheridan, Chengzhe Tian, Michelle Daya, Yue Hao +3 more

Simultaneous measurement of biochemical phenotypes and gene expression in single cells

Nucleic Acids Research(2020)10.1093/nar/gkaa240

N/A

0DataRank · unranked

10 citations

Kent Riemondy, Lakotah Hardie, Jay R. Hesselberth, Amanda L. Richer

Enhancing Hematopoiesis from Murine Embryonic Stem Cells through MLL1-Induced Activation of a Rac/Rho/Integrin Signaling Axis

Stem Cell Reports(2020)10.1016/j.stemcr.2019.12.009

N/A

0DataRank · unranked

9 citations

G. Devon Trahan, Elizabeth D. Howell, Nancy A. Speck, Kenneth L. Jones, Austin E. Gillen +5 more

Physiologic RNA targets and refined sequence specificity of coronavirus EndoU

RNA(2020)10.1261/rna.076604.120

N/A

0DataRank · unranked

46 citations

Yize Li, Eveline Kindler, Daphne Cooper, Monica Ransom, Volker Thiel +4 more

Jay R. Hesselberth

Indexed papers

Top data-sharing exemplar

Papers