Paul A. Reyfman

University of Helsinki

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

20.9Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8

Top 4%

5.4DataRank

Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Papers

Driven by 37 papers — median percentile 91. Top paper: “SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues”.

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

Cell(2020)10.1016/j.cell.2020.04.035

N/A

14.1DataRank · unranked

2492 citations

Samuel J. Allon, Sarah K. Nyquist, Ian Mbano, Vincent N. Miao, Constantine N. Tzouanas +92 more

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8

Top 4%

5.4DataRank

Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2

Top 4%

5.0DataRank

Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

A roadmap for the Human Developmental Cell Atlas

Nature(2021)10.1038/s41586-021-03620-1

Top 6%

3.9DataRank

Top 6%194 citations

Deanne Taylor, Sten Linnarsson, Bruce J. Aronow, Samirkumar B. Amin, Roger A. Barker +53 more

An integrated cell atlas of the human lung in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.10.483747

Top 8%

2.8DataRank

Top 8%97 citations

Daniel Strobl, Luke Zappia, Nikolay S. Markov, Laure-Emmanuelle Zaragosi, Marie-Jeanne Arguel +77 more

CellRank 2: unified fate mapping in multiview single-cell data

Nature Methods(2024)10.1038/s41592-024-02303-9

N/A

2.2DataRank · unranked

190 citations

Marius Lange, Michal Klein, Paul A. Reyfman, Fabian Joachim Theis, Herbert B. Schiller

The Human Cell Atlas White Paper

arXiv (Cornell University)(2018)10.17863/cam.40032

Top 10%

2.2DataRank

Top 10%41 citations

Sarah A. Teichmann, Orit Rozenblatt‐Rosen, Michael J. T. Stubbington, Kristin G. Ardlie, Ido Amit +76 more

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

Nature Communications(2021)10.1038/s41467-021-24467-0

N/A

2.0DataRank · unranked

43 citations

Nichelle I. Winters, Mei-i Chung, Chitra Joseph, Austin J. Gutierrez, Arun C. Habermann +67 more

CellRank for directed single-cell fate mapping

Research Square(2020)10.21203/rs.3.rs-94819/v1

N/A

1.6DataRank · unranked

35 citations

Volker Bergen, Michal Klein, Manu Setty, Bernhard Reuter, Mostafa Bakhti +7 more

Using Bayesian Networks to Analyze Expression Data

Journal of Computational Biology(2000)10.1089/106652700750050961

N/A

1.2DataRank · unranked

3318 citations

Michal Linial, Iftach Nachman, Paul A. Reyfman, Nir Friedman

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

Nature Genetics(2003)10.1038/ng1165

N/A

1.1DataRank · unranked

1701 citations

Michael Shapira, Prisca Liberali, David Botstein, Daphne Koller, Nir Friedman +3 more

Inferring subnetworks from perturbed expression profiles

Bioinformatics(2001)10.1093/bioinformatics/17.suppl_1.s215

N/A

0.949DataRank · unranked

559 citations

Prisca Liberali, Gal Elidan, Nir Friedman, Paul A. Reyfman

Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19

Immunity(2020)10.1016/j.immuni.2020.11.017

N/A

0.901DataRank · unranked

405 citations

Neha Mishra, Florian Tran, Thomas Bahmer, Lena Best, Johanna I. Blase +169 more

Regenerative potential of prostate luminal cells revealed by single-cell analysis

Science(2020)10.1126/science.aay0267

N/A

0.859DataRank · unranked

306 citations

Matan Hofree, Danielle Choi, Eliot L. Linton, Mesruh Turkekul, Alborz Bejnood +16 more

The commitment of the human cell atlas to humanity

Nature Communications(2024)10.1038/s41467-024-54306-x

Top 24%

0.847DataRank

Top 24%20 citations

Kristin G. Ardlie, Fabiana Arzuaga, Gordon A. Awandare, Samirkumar B. Amin, Alexander Bernier +38 more

NAD+ Regeneration Rescues Lifespan, but Not Ataxia, in a Mouse Model of Brain Mitochondrial Complex I Dysfunction

Cell Metabolism(2020)10.1016/j.cmet.2020.06.003

N/A

0.708DataRank · unranked

111 citations

Colleen R. Reczek, Paul A. Reyfman, Divakar S. Mithal, Craig Horbinski, Navdeep S. Chandel +1 more

Author response: The Human Cell Atlas

(2017)10.7554/elife.27041.011

Top 29%

0.700DataRank

Top 29%14 citations

Sarah A. Teichmann, Matthew E. Hurles, Ido Amit, Kerstin Lindblad‐Toh, Bernd Bodenmiller +60 more

Resetting proteostasis with ISRIB promotes epithelial differentiation to attenuate pulmonary fibrosis

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2101100118

N/A

0.688DataRank · unranked

97 citations

Nikolay S. Markov, Ziyan Lu, Raul Piseaux Aillon, Saul Soberanes, Constance E. Runyan +19 more

CellRank for directed single-cell fate mapping

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.19.345983

N/A

0.593DataRank · unranked

51 citations

Volker Bergen, Michal Klein, Manu Setty, Bernhard Reuter, Mostafa Bakhti +7 more

Minreg: Inferring an active regulator set

Bioinformatics(2002)10.1093/bioinformatics/18.suppl_1.s258

N/A

0.581DataRank · unranked

47 citations

Prisca Liberali, Amos Tanay, Paul A. Reyfman

Transcriptional profiling of pediatric cholestatic livers identifies three distinct macrophage populations

PLoS ONE(2021)10.1371/journal.pone.0244743

N/A

0.561DataRank · unranked

41 citations

Shang-Yang Chen, Gaurav Gadhvi, Liang Feng, Kyle D. Gromer, Hiam Abdala‐Valencia +11 more

Reduced expression of mitochondrial complex I subunit Ndufs2 does not impact healthspan in mice

Scientific Reports(2022)10.1038/s41598-022-09074-3

N/A

0.520DataRank · unranked

31 citations

Ram Prosad Chakrabarty, Karis B. D’Alessandro, Yuan‐Shih Hu, Karthik Vasan, Jerica Tan +12 more

Determinants of expression of SARS‐CoV‐2 entry‐related genes in upper and lower airways

Allergy(2021)10.1111/all.15152

N/A

0.510DataRank · unranked

29 citations

Florian Massip, Cancan Qi, Maria Stella de Biase, Jos van Nijnatten, Elin T. G. Kersten +31 more

Determinants of SARS-CoV-2 receptor gene expression in upper and lower airways

medRxiv(2020)10.1101/2020.08.31.20169946

N/A

0.457DataRank · unranked

20 citations

J. van Nijnatten, Elin T. G. Kersten, Nazanin Z. Kermani, Diana van Heemst, U-BIOPRED study group +42 more

Unified fate mapping in multiview single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.19.549685

N/A

0.449DataRank · unranked

19 citations

Marius Lange, Michal Klein, Paul A. Reyfman, Fabian Joachim Theis, Herbert B. Schiller

Influenza-induced activation of recruited alveolar macrophages during the early inflammatory phase drives lung injury and lethality

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.08.141309

N/A

0.277DataRank · unranked

3 citations

Kishore R. Anekalla, Yuan‐Shih Hu, Jennifer Davis, Mark Ciesielski, Gaurav Gadhvi +11 more

An integrated cell atlas of the human lung in health and disease

Research Square(2022)10.21203/rs.3.rs-1438584/v1

Top 71%

0.127DataRank

Top 71%1 citations

Avi Srivastava, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay S. Markov +80 more

DNA methylation and gene expression signatures are associated with ataxia-telangiectasia phenotype

Scientific Reports(2020)10.1038/s41598-020-64514-2

N/A

0DataRank · unranked

38 citations

Roland Ndeh, Kathryn A. Helmin, Basil Khuder, Cynthia Rothblum‐Oviatt, Joseph M. Collaco +5 more

The proteostatic network chaperome is downregulated in F508del homozygote cystic fibrosis

Journal of Cystic Fibrosis(2021)10.1016/j.jcf.2020.12.018

N/A

0DataRank · unranked

7 citations

Michael Alexander, Basil Khuder, Yuliya Politanska, Hiam Abdala‐Valencia, G. R. Scott Budinger +4 more

Relationship Between Protein Biomarkers and Interstitial Feature Progression in Smokers

(2021)10.1164/ajrccm-conference.2021.203.1_meetingabstracts.a1002

N/A

0DataRank · unranked

0 citations

Tracy J. Doyle, Bina Choi, Najma M Adan, R. Harmouche, Raúl San Jośe Estépar +21 more

A Novel MIP-1–Expressing Macrophage Subtype in BAL Fluid from Healthy Volunteers

American Journal of Respiratory Cell and Molecular Biology(2022)10.1165/rcmb.2021-0123oc

N/A

0DataRank · unranked

7 citations

Elizabeth S. Malsin, Basil Khuder, Nikita Joshi, Gaurav Gadhvi, Annette S. Flozak +13 more

Author Correction: Reduced expression of mitochondrial complex I subunit Ndufs2 does not impact healthspan in mice

Scientific Reports(2022)10.1038/s41598-022-12069-9

N/A

0DataRank · unranked

2 citations

Ram Prosad Chakrabarty, Karis B. D’Alessandro, Yuan‐Shih Hu, Karthik Vasan, Jerica Tan +12 more

Mitochondrial integrated stress response controls lung epithelial cell fate

Nature(2023)10.1038/s41586-023-06423-8

N/A

0DataRank · unranked

160 citations

Minho Lee, Youngjin Shin, Regina Giovanni, Ram Prosad Chakrabarty, Mariana Maciel +11 more

Epithelial cell–specific loss of function of Miz1 causes a spontaneous COPD-like phenotype and up-regulates Ace2 expression in mice

Science Advances(2020)10.1126/sciadv.abb7238

N/A

0DataRank · unranked

23 citations

Cong Chen, Qiao Zhang, Alexander V. Misharin, Hiam Abdala‐Valencia, S. Marina Casalino‐Matsuda +21 more

Profibrotic monocyte-derived alveolar macrophages as a biomarker and therapeutic target in systemic sclerosis-associated interstitial lung disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.669006

N/A

0DataRank · unranked

3 citations

Anthony J. Esposito, Karolina J. Senkow, M. Schleck, Luisa Cusick, Zhan Yu +61 more

Resetting proteostasis with ISRIB prevents pulmonary fibrosis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.26.965566

N/A

0DataRank · unranked

2 citations

Nikolay S. Markov, Ziyan Lu, Raul Piseaux Aillon, Saul Soberanes, Constance E. Runyan +15 more

The lung microenvironment shapes a dysfunctional response of alveolar macrophages in aging

Journal of Clinical Investigation(2021)10.1172/jci140299

N/A

0DataRank · unranked

180 citations

Ziyou Ren, Nikita Joshi, Satoshi Watanabe, Thomas Stoeger, Monica Chi +29 more

Paul A. Reyfman

Indexed papers

Top data-sharing exemplar

Papers