Olivier Fédrigo

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

28.3Author DataRank

Indexed papers

19in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 19 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Towards complete and error-free genome assemblies of all vertebrate species

Nature(2021)10.1038/s41586-021-03451-0

Top 3%

6.0DataRank

Top 3%3155 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

Papers

Driven by 45 papers — median percentile 57. Top paper: “Towards complete and error-free genome assemblies of all vertebrate species”.

Towards complete and error-free genome assemblies of all vertebrate species

Nature(2021)10.1038/s41586-021-03451-0

Top 3%

6.0DataRank

Top 3%3155 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Towards complete and error-free genome assemblies of all vertebrate species

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.110833

Top 5%

4.3DataRank

Top 5%195 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

Platypus and echidna genomes reveal mammalian biology and evolution

Nature(2021)10.1038/s41586-020-03039-0

Top 7%

3.4DataRank

Top 7%175 citations

Linda Shearwin‐Whyatt, Jing Li, Zhenzhen Song, Takashi Hayakawa, David Stevens +37 more

Population genomics of the critically endangered kākāpō

Cell Genomics(2021)10.1016/j.xgen.2021.100002

Top 7%

3.3DataRank

Top 7%243 citations

Tom van der Valk, Hernán E. Morales, Christopher W. Wheat, David Díez‐del‐Molino, Johanna von Seth +35 more

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

Genome biology(2021)10.1186/s13059-021-02336-9

N/A

3.2DataRank · unranked

148 citations

Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fédrigo +35 more

Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue

Nature Biotechnology(2022)10.1038/s41587-022-01231-3

N/A

2.8DataRank · unranked

133 citations

Wen Hu, Anoushka Joglekar, Li Fan, Paul Collier, Careen Foord +25 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Evolutionary and biomedical insights from a marmoset diploid genome assembly

Nature(2021)10.1038/s41586-021-03535-x

Top 13%

1.6DataRank

Top 13%67 citations

Yang Zhou, Stephanie Marcus, Giulio Formenti, Lucie A. Bergeron, Zhenzhen Song +28 more

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Nature Biotechnology(2024)10.1038/s41587-023-02100-3

N/A

1.2DataRank · unranked

69 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +36 more

An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes

Cell Reports(2023)10.1016/j.celrep.2023.112263

N/A

1.1DataRank · unranked

48 citations

Kaan Ihsan Eskut, Vladimir A. Timoshevskiy, Sofia Robb, Carson Holt, Jon E. Hess +20 more

Haplotype-resolved assembly of diploid genomes without parental data

Nature Biotechnology(2022)10.1038/s41587-022-01261-x

N/A

1.0DataRank · unranked

907 citations

Erich D. Jarvis, Olivier Fédrigo, Lara Urban, Neil J. Gemmell, Alexandra P. Lewis +2 more

Robust haplotype-resolved assembly of diploid individuals without parental data

arXiv (Cornell University)(2021)10.48550/arxiv.2109.04785

N/A

0.945DataRank · unranked

16 citations

Erich D. Jarvis, Olivier Fédrigo, Klaus‐Peter Koepfli, Lara Urban, Neil J. Gemmell +2 more

Fourth Report on Chicken Genes and Chromosomes 2022

Cytogenetic and Genome Research(2022)10.1159/000529376

N/A

0.877DataRank · unranked

53 citations

James M. Alfieri, Nick Anthony, Peter Arensburger, Giridhar Athrey, Jennifer Balacco +95 more

A chromosome-level reference genome and pangenome for barn swallow population genomics

Cell Reports(2023)10.1016/j.celrep.2023.111992

Top 25%

0.821DataRank

Top 25%33 citations

Guido Roberto Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Abueg +34 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain

Nature Neuroscience(2024)10.1038/s41593-024-01616-4

N/A

0.701DataRank · unranked

106 citations

Wen Hu, Bei Zhang, Oleksandr Narykov, Mark Diekhans, Jordan Marrocco +10 more

Genomic signature of Fanconi anaemia DNA repair pathway deficiency in cancer

Nature(2022)10.1038/s41586-022-05253-4

N/A

0.673DataRank · unranked

88 citations

Mathijs A. Sanders, Krupa R. Patel, Ralf Dietrich, Raymond J. Noonan, Francis P. Lach +44 more

A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography

Molecular Biology and Evolution(2024)10.1093/molbev/msae036

Top 31%

0.644DataRank

Top 31%22 citations

Phillip A. Morin, Susanne Meyer, Li‐Fang Chu, Jeff K. Jacobsen, Jessica Antosiewicz‐Bourget +31 more

Chromosome-level echidna genome illuminates evolution of multiple sex chromosome system in monotremes

GigaScience(2025)10.1093/gigascience/giae112

N/A

0.598DataRank · unranked

14 citations

Jiazheng Jin, Xuemei Li, Gregory Gedman, Sarah Pelan, Arang Rhie +9 more

False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

Genome biology(2022)10.1186/s13059-022-02765-0

N/A

0.596DataRank · unranked

52 citations

Chul Lee, Byung June Ko, Dong Ahn Yoo, Sohyoung Won, Adam M. Phillippy +14 more

Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2201076120

N/A

0.596DataRank · unranked

52 citations

Tomás Carrasco-Valenzuela, Elisa Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander +42 more

Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks

Nature Communications(2023)10.1038/s41467-023-42238-x

N/A

0.584DataRank · unranked

48 citations

Frank J. Tulenko, Mats E. Pettersson, Kang Du, Margo Montandon, Sylke Winkler +16 more

The swan genome and transcriptome, it is not all black and white

Genome biology(2023)10.1186/s13059-022-02838-0

N/A

0.515DataRank · unranked

30 citations

Yuanyuan Cheng, Keng Yih Chew, Arjun Challagulla, R.H. Kraus, Ralf Mueller +40 more

A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

BMC Biology(2022)10.1186/s12915-022-01427-8

N/A

0.489DataRank · unranked

25 citations

Chentao Yang, Giulio Formenti, Kalpana Raja, Lili Yan, Alan Tracey +24 more

Evolution and genetic architecture of sex-limited polymorphism in cuckoos

Science Advances(2024)10.1126/sciadv.adl5255

N/A

0.442DataRank · unranked

18 citations

Cristiana I. Marques, Pedro Andrade, Swetlana G. Meshcheryagina, Ismael Galván, Sandra Afonso +29 more

The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758

Wellcome Open Research(2020)10.12688/wellcomeopenres.15679.1

Top 43%

0.441DataRank

Top 43%10 citations

Kathryn Fingland, Rachel Cripps, Roberto Portela Miguez, Michelle Smith, Craig Corton +20 more

A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)

GigaScience(2022)10.1093/gigascience/giac026

Top 43%

0.433DataRank

Top 43%9 citations

Joseph D. Orkin, Bettina Haase, Jacquelyn Mountcastle, Mads F. Bertelsen, Olivier Fédrigo +4 more

The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes

Nature Communications(2023)10.1038/s41467-023-41784-8

Top 43%

0.430DataRank

Top 43%13 citations

Oscar Ortega‐Recalde, Melanie K. Laird, Takashi Hayakawa, Kyle S. Richardson, Finlay.C. B. Reese +21 more

Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.02.535281

N/A

0.406DataRank · unranked

14 citations

Wen Hu, Bei Zhang, Oleksandr Narykov, Mark Diekhans, Jennifer Balacco +9 more

Variation in predicted COVID‐19 risk among lemurs and lorises

American Journal of Primatology(2021)10.1002/ajp.23255

N/A

0.396DataRank · unranked

13 citations

Joseph D. Orkin, Mareike C. Janiak, Alejandro Valenzuela, Lukas F. K. Kuderna, Frank Marrone +33 more

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546576

N/A

0.373DataRank · unranked

11 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +32 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Genome Reference and Sequence Variation in the Large Repetitive Central Exon of Human MUC5AC

UNC Libraries(2020)10.17615/j2k8-6b67

Top 51%

0.348DataRank

Top 51%3 citations

Rhonda G. Pace, Judith A. Voynow, Jaclyn R. Stonebraker, Zheng Shuo, George Xianzhi Yuan +11 more

Pangenomics provides insights into the role of synanthropy in barn swallow evolution

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.28.486082

Top 65%

0.197DataRank

Top 65%2 citations

Guido Roberto Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Abueg +34 more

Chromosome level genome assembly of the Etruscan shrew Suncus etruscus

Scientific Data(2024)10.1038/s41597-024-03011-x

Top 70%

0.165DataRank

Top 70%2 citations

Susanne Meyer, Li‐Fang Chu, Linelle Abueg, Jessica Antosiewicz‐Bourget, Jennifer Balacco +21 more

The swan genome and transcriptome: its not all black and white

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.02.490350

N/A

0.104DataRank · unranked

1 citations

Yuanyuan Cheng, Keng Yih Chew, Arjun Challgula, R.H. Kraus, Ralf Mueller +41 more

Human assemblies evaluated in the hifiasm (Hi-C) paper

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5948487

Top 100%

0DataRank

Top 100%0 citations

Erich D. Jarvis, Olivier Fédrigo, Klaus‐Peter Koepfli, Lara Urban, Neil J. Gemmell +2 more

A high-quality blue whale genome, segmental duplications, and historical demography

Research Square(2022)10.21203/rs.3.rs-1910240/v1

N/A

0DataRank · unranked

7 citations

Phillip A. Morin, Susanne Meyer, Li‐Fang Chu, Jeff K. Jacobsen, Jessica Antosiewicz‐Bourget +31 more

Fanconi Anemia Pathway Deficiency Drives Copy Number Variation in Squamous Cell Carcinomas

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.14.456365

N/A

0DataRank · unranked

12 citations

Mathijs A. Sanders, Krupa R. Patel, Ralf Dietrich, Raymond J. Noonan, Francis P. Lach +39 more

Human assemblies evaluated in the hifiasm (Hi-C) paper

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5948486

Top 100%

0DataRank

Top 100%0 citations

Erich D. Jarvis, Olivier Fédrigo, Klaus‐Peter Koepfli, Lara Urban, Neil J. Gemmell +2 more

Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease

Nature Communications(2020)10.1038/s41467-020-17009-7

N/A

0DataRank · unranked

126 citations

Kelly Cochran, Christopher Kozlowski, Jingjing Wang, Graham Alexander, Martha A. Cady +15 more

Non-human assemblies evaluated in the hifiasm (Hi-C) paper

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5953248

Top 100%

0DataRank

Top 100%0 citations

Erich D. Jarvis, Olivier Fédrigo, Klaus‐Peter Koepfli, Lara Urban, Neil J. Gemmell +2 more

Olivier Fédrigo

Indexed papers

Top data-sharing exemplar

Papers