Alice H. Berger

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Also affiliated with Fred Hutch Cancer Center

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “Loss of MGA repression mediated by an atypical polycomb complex promotes tumor progression and invasiveness”.

Loss of MGA repression mediated by an atypical polycomb complex promotes tumor progression and invasiveness

eLife(2021)10.7554/elife.64212

N/A

1.3DataRank · unranked

53 citations

Jonathen Catchpole, Brian Freie, Emily Eastwood, Ekaterina Babaeva, Michael Geuenich +14 more

Oncogenic Signaling Pathways in The Cancer Genome Atlas

Cell(2018)10.1016/j.cell.2018.03.035

N/A

1.2DataRank · unranked

3322 citations

Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor C. La +891 more

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Cell Reports(2021)10.1016/j.celrep.2021.108707

N/A

1.1DataRank · unranked

32 citations

Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago C. Silva +77 more

Massively parallel phenotyping of variant impact in cancer with Perturb-seq reveals a shift in the spectrum of cell states induced by somatic mutations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.383307

N/A

0.673DataRank · unranked

12 citations

James T. Neal, Emily Shea, Pratiksha I. Thakore, Livnat Jerby-Arnon, Danielle Dionne +15 more

Comprehensive molecular profiling of lung adenocarcinoma: The cancer genome atlas research network

UNC Libraries(2020)10.17615/s7re-zq82

N/A

0.520DataRank · unranked

31 citations

Marc Ladanyi, William Lee, David G. Beer, Bryan Hernandez, David J. Kwiatkowski +27 more

A multiplex, prime editing framework for identifying drug resistance variants at scale

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.27.550902

N/A

0.457DataRank · unranked

20 citations

Chase C. Suiter, Riza M. Daza, Nahum Smith, Phoebe C. R. Parrish, Troy A. McDiarmid +8 more

Advances in Lung Cancer Basic and Translational Research in 2025 – Overview and Perspectives Focusing on NSCLC

Journal of Thoracic Oncology(2025)10.1016/j.jtho.2025.05.024

N/A

0.406DataRank · unranked

14 citations

Triparna Sen, Montse Sánchez‐Céspedes, Sandra Ortiz‐Cuaran, Yohan Bossé, Floris Dammeijer +23 more

eVIP2: Expression-based variant impact phenotyping to predict the function of gene variants

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009132

N/A

0.373DataRank · unranked

11 citations

Lishan Fang, April Lo, Maria McSharry, David Haan, Casey O’Brien +4 more

Author Correction: Massively parallel phenotyping of coding variants in cancer with Perturb-seq

Nature Biotechnology(2022)10.1038/s41587-022-01495-9

N/A

0.133DataRank · unranked

1 citations

James T. Neal, Emily Shea, Pratiksha I. Thakore, Livnat Jerby-Arnon, Danielle Dionne +17 more

Mapping the unique and shared functions of oncogenic KRAS and RIT1 with proteome and transcriptome profiling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.10.030460

N/A

0DataRank · unranked

0 citations

Kristin Holmes, Filip Mundt, Sitapriya Moorthi, Iris Fung, Shaunt Fereshetian +5 more

Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer

Nature Communications(2021)10.1038/s41467-021-24841-y

N/A

0DataRank · unranked

49 citations

Amanda K. Riley, Naomi T. Nkinsi, Shriya Kamlapurkar, Phoebe C. R. Parrish, April Lo +16 more

RNA isoform screens uncover the essentiality and tumor-suppressor activity of ultraconserved poison exons

Nature Genetics(2020)10.1038/s41588-019-0555-z

N/A

0DataRank · unranked

138 citations

Jacob T. Polaski, Qing Feng, Emma J. De Neef, Emma R. Hoppe, Maria McSharry +8 more

Cell Painting predicts impact of lung cancer variants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.18.469171

N/A

0DataRank · unranked

8 citations

John Arévalo, Federica Piccioni, Mark‐Anthony Bray, Cathy L Hartland, Xiaoyun Wu +6 more

Oncogenic KRAS alters splicing factor phosphorylation and alternative splicing in lung cancer

BMC Cancer(2022)10.1186/s12885-022-10311-1

N/A

0DataRank · unranked

10 citations

Maria McSharry, Alice H. Berger, April Lo

All About That Ras: Novel Fusion Drives Ras Pathway Activation in Lung Cancer

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-22-0736

N/A

0DataRank · unranked

3 citations

Alice H. Berger, Sitapriya Moorthi

Oncogenic KRAS alters splicing factor phosphorylation and alternative splicing in lung cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.20.492866

N/A

0DataRank · unranked

1 citations

Maria McSharry, Alice H. Berger, April Lo

Chromosome-level genome editing uncovers aneuploidy addiction in cancer

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100618

N/A

0DataRank · unranked

1 citations

Alice H. Berger, Siobhan O’Brien

An integrative oncogene-dependency map identifies unique vulnerabilities of oncogenic EGFR, KRAS, and RIT1 in lung cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.187310

N/A

0DataRank · unranked

1 citations

Naomi T. Nkinsi, Amanda K. Riley, Phoebe C. R. Parrish, Fujiko Duke, Jenny Chen +8 more

pgMAP: a pipeline to enable guide RNA read mapping from dual-targeting CRISPR screens

arXiv (Cornell University)(2023)10.48550/arxiv.2306.00944

N/A

0DataRank · unranked

0 citations

Daniel J. Groso, James D. Thomas, Robert K. Bradley, Alice H. Berger, Phoebe C. R. Parrish

Mutant RIT1 cooperates with YAP to drive an EMT-like lung cancer state

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.11.623044

N/A

0DataRank · unranked

0 citations

Saksham Gupta, Sitapriya Moorthi, Maria McSharry, Shriya Kamlapurkar, Siobhan O’Brien +9 more

Discovery of synthetic lethal and tumor suppressor paralog pairs in the human genome

Cell Reports(2021)10.1016/j.celrep.2021.109597

N/A

0DataRank · unranked

119 citations

James D. Thomas, Austin M. Gabel, Shriya Kamlapurkar, Robert K. Bradley, Alice H. Berger +1 more

Discovery of synthetic lethal and tumor suppressive paralog pairs in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.20.423710

N/A

0DataRank · unranked

5 citations

James D. Thomas, Shriya Kamlapurkar, Austin M. Gabel, Robert K. Bradley, Alice H. Berger +1 more