John L. Rinn

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.4Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Papers

Driven by 50 papers — median percentile 97. Top paper: “Expanded encyclopaedias of DNA elements in the human and mouse genomes”.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Mosaic cis-regulatory evolution drives transcriptional partitioning of HERVH endogenous retrovirus in the human embryo

eLife(2022)10.7554/elife.76257

N/A

1.5DataRank · unranked

56 citations

Manvendra Singh, Gabrijela Dumbović, Jason D. Chobirko, John L. Rinn, Cédric Feschotte +1 more

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Nature Protocols(2012)10.1038/nprot.2012.016

N/A

1.4DataRank · unranked

12835 citations

Adam Roberts, Reenal Pattni, Daehwan Kim, Cheryl A. Keller, Harold Pimentel +5 more

Resolving mechanisms of immune‐mediated disease in primary CD4 T cells

EMBO Molecular Medicine(2020)10.15252/emmm.202012112

N/A

1.4DataRank · unranked

45 citations

Abigail F. Groff, Oliver S. Burren, Chiara Gerhardinger, Kaia Mattioli, Anna Hutchinson +8 more

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

Genes & Development(2011)10.1101/gad.17446611

N/A

1.2DataRank · unranked

3660 citations

Cole Trapnell, Barbara Tazon-Vega, Prisca Liberali, John L. Rinn, Loyal A. Goff +3 more

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Proceedings of the National Academy of Sciences(2009)10.1073/pnas.0904715106

N/A

1.2DataRank · unranked

2859 citations

Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales +8 more

A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response

Cell(2010)10.1016/j.cell.2010.06.040

N/A

1.1DataRank · unranked

2079 citations

Mitchell Guttman, David Feldser, Manuel Garber, Magdalena J. Koziol, Daniela Kenzelmann-Broz +11 more

lincRNAs act in the circuitry controlling pluripotency and differentiation

Nature(2011)10.1038/nature10398

N/A

1.1DataRank · unranked

1897 citations

Julie Donaghey, Bryce W. Carey, Manuel Garber, Jennifer K. Grenier, Glen Munson +13 more

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

Nature Biotechnology(2010)10.1038/nbt.1633

N/A

1.1DataRank · unranked

1265 citations

Manuel Garber, Joshua Z. Levin, Julie Donaghey, James Robinson, Xian Adiconis +9 more

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

Genome Research(2011)10.1101/gr.133009.111

N/A

1.0DataRank · unranked

814 citations

Eivind Valen, Alireza Heravi-Moussavi, Manuel Garber, Nadine L. Vastenhouw, Joshua Z. Levin +8 more

Multiple knockout mouse models reveal lincRNAs are required for life and brain development

eLife(2013)10.7554/elife.01749

N/A

0.982DataRank · unranked

697 citations

Loyal A. Goff, Simona Lodato, Boyan Bonev, Abigail F. Groff, Chiara Gerhardinger +21 more

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution

Genome Biology(2015)10.1186/s13059-015-0586-4

N/A

0.982DataRank · unranked

695 citations

Margaret C. Dunagin, Patrick D. McClanahan, Andrew Biaesch, Olivia Padovan-Merhar, Prisca Liberali +5 more

Chromatin signature of embryonic pluripotency is established during genome activation

Nature(2010)10.1038/nature08866

N/A

0.891DataRank · unranked

379 citations

Yong Zhang, Ian G. Woods, Farhad Imam, Prisca Liberali, X. Shirley Liu +4 more

Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs

Development(2013)10.1242/dev.098343

N/A

0.851DataRank · unranked

290 citations

Andrea Pauli, John L. Rinn, Prisca Liberali, Alexander F. Schier, Eivind Valen +1 more

Computational analysis of noncoding RNAs

WIREs RNA(2012)10.1002/wrna.1134

N/A

0.581DataRank · unranked

47 citations

Sebastian Will, David A. Hendrix, Loyal A. Goff, John L. Rinn, Bonnie Berger +2 more

The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation

Nature Communications(2024)10.1038/s41467-024-50402-0

N/A

0.477DataRank · unranked

23 citations

Erika Lasda, Isabela Tiemy Pereira, Tenaya K. Vallery, Daniel Ramirez, Jordan P. Lewandowski +4 more

Massively parallel dissection of RNA in RNA–protein interactions in vivo

Nucleic Acids Research(2024)10.1093/nar/gkae334

N/A

0.322DataRank · unranked

5 citations

Evan P. Hass, William Campodonico-Burnett, Yong Kyu Lee, Erika Lasda, Jaynish S. Shah +3 more

X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes

Nature Communications(2024)10.1038/s41467-024-54673-5

N/A

0.272DataRank · unranked

5 citations

Sarah Hoelzl, Zachary D. Smith, Chiara Gerhardinger, Marion O. C. Gonner, Juan Antonio Aguilar‐Pimentel +21 more

Biophysical characterization of high-confidence, small human proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589296

N/A

0.165DataRank · unranked

2 citations

Irwin Jungreis, Jeffre Allen, Christina Cleveland, Shinichi Morishita, Sharon L. R. Kardia +4 more

Mosaic cis-regulatory evolution drives transcriptional partitioning of HERVH endogenous retrovirus in the human embryo

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.08.451617

N/A

0DataRank · unranked

4 citations

Manvendra Singh, Gabrijela Dumbović, Jason D. Chobirko, John L. Rinn, Cédric Feschotte +1 more

The long‐noncoding RNA from the MYH7b locus (lncMYH7b) has pronounced effects on cardiomyocyte molecular and cellular phenotypes

The FASEB Journal(2021)10.1096/fasebj.2021.35.s1.05143

N/A

0DataRank · unranked

0 citations

Michael J. Smallegan, Kevin M. Rigby, Massimo Buvoli, Jose S. Navarro-Arriola, Rusty L. Montgomery +3 more

DNMT1 inhibition by pUG-fold quadruplex RNA

RNA(2022)10.1261/rna.079479.122

N/A

0DataRank · unranked

26 citations

Camila I. Sousa, Michael J. Smallegan, Jessica J. Song, Anne R. Gooding, Vignesh Kasinath +3 more

Prolonged FOS activity disrupts a global myogenic transcriptional program by altering 3D chromatin architecture in primary muscle progenitor cells

Skeletal Muscle(2022)10.1186/s13395-022-00303-x

N/A

0DataRank · unranked

14 citations

Gabriel Elizalde, Alfredo González, Kartik Soni, John L. Rinn, Amy J. Wagers +2 more

Evolutionary divergence of Firre localization and expression

RNA(2022)10.1261/rna.079070.121

N/A

0DataRank · unranked

12 citations

Michael J. Smallegan, Taeyoung Hwang, Skylar D. Hanson, Gabrijela Dumbović, John L. Rinn +1 more

The temporal dynamics of lncRNA Firre -mediated epigenetic and transcriptional regulation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.15.492001

N/A

0DataRank · unranked

3 citations

Erika Lasda, Isabela Tiemy Pereira, Tenaya K. Vallery, Daniel Ramirez, Jordan P. Lewandowski +4 more

DNMT1 inhibition by pUG-fold quadruplex RNA

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.14.512272

N/A

0DataRank · unranked

2 citations

Camila I. Sousa, Michael J. Smallegan, Jessica J. Song, Anne R. Gooding, Vignesh Kasinath +3 more

Massively Parallel Dissection of RNA in RNA-protein interactions in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.13.495920

N/A

0DataRank · unranked

1 citations

Yu Hsuan Lee, William Campodonico-Burnett, Yong Kyu Lee, Erika Lasda, Jaynish S. Shah +3 more

Discovery and characterization of LNCSOX17 as an essential regulator in human endoderm formation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.12.507139

N/A

0DataRank · unranked

0 citations

Adriano Bolondi, Helene Kretzmer, Christian Much, René Buschow, Alina Rose +15 more

Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses

Cell Genomics(2023)10.1016/j.xgen.2023.100440

N/A

0DataRank · unranked

6 citations

Sergio Triana, Siddharth S. Raju, Tammy C. T. Lan, Kim A. Lagerborg, Melissa A. Rudy +27 more

T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation

eLife(2023)10.7554/elife.83077

N/A

0DataRank · unranked

4 citations

Adriano Bolondi, Helene Kretzmer, Christian Much, René Buschow, Alina Rose +15 more

Evaluation of the RNA-dependence of PRC2 binding to chromatin in human pluripotent stem cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.17.553776

N/A

0DataRank · unranked

11 citations

Taeyoung Hwang, Anne R. Gooding, Karen J. Goodrich, Skylar D. Hanson, Tenaya K. Vallery +3 more

Biophysical characterization of high-confidence, small human proteins

Biophysical Reports(2024)10.1016/j.bpr.2024.100167

N/A

0DataRank · unranked

3 citations

Irwin Jungreis, Jeffre Allen, Christina Cleveland, Jonathan M. Mudge, Manolis Kellis +3 more

Sequences to systems

Genome Biology(2010)10.1186/gb-2010-11-5-303

N/A

0DataRank · unranked

0 citations

John L. Rinn, Sharon L. R. Kardia

The Sox2 transcription factor binds RNA

Nature Communications(2020)10.1038/s41467-020-15571-8

N/A

0DataRank · unranked

162 citations

Desmond J. Hamilton, Taeyoung Hwang, Nicholas Victor Parsonnet, John L. Rinn, Deborah S. Wuttke +2 more

RNA is essential for PRC2 chromatin occupancy and function in human pluripotent stem cells

Nature Genetics(2020)10.1038/s41588-020-0662-x

N/A

0DataRank · unranked

155 citations

Taeyoung Hwang, Anne R. Gooding, Karen J. Goodrich, John L. Rinn, Thomas R. Cech +1 more

The Tug1 lncRNA locus is essential for male fertility

Genome biology(2020)10.1186/s13059-020-02081-5

N/A

0DataRank · unranked

113 citations

Gabrijela Dumbović, Audrey R. Watson, Taeyoung Hwang, Emily Jacobs-Palmer, Nydia Chang +14 more

Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome

Nature Communications(2020)10.1038/s41467-020-19879-3

N/A

0DataRank · unranked

64 citations

Giancarlo Bonora, Jordan P. Lewandowski, Jitendra Thakur, Galina N. Filippova, Steven Henikoff +7 more

Identification of human long noncoding RNAs associated with nonalcoholic fatty liver disease and metabolic homeostasis

Journal of Clinical Investigation(2020)10.1172/jci136336

N/A

0DataRank · unranked

51 citations

Ping Li, Yonghe Ma, Chengfei Jiang, Yi Chen, Yu Shi +13 more

Common variants in signaling transcription-factor-binding sites drive phenotypic variability in red blood cell traits

Nature Genetics(2020)10.1038/s41588-020-00738-2

N/A

0DataRank · unranked

49 citations

Eirini Trompouki, Brian J. Abraham, Leandro M. Colli, Kian Hong Kock, William Mallard +28 more

Mitoregulin Controls β-Oxidation in Human and Mouse Adipocytes

Stem Cell Reports(2020)10.1016/j.stemcr.2020.03.002

N/A

0DataRank · unranked

46 citations

Curtis R. Warren, Haojie Yu, Takafumi Toyohara, Qiurong Ding, Mary H.C. Florido +6 more

Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.148957

N/A

0DataRank · unranked

5 citations

Aaron E. Lin, James Logue, Travis K. Hughes, Nadine M. Khoury, Siddharth S. Raju +21 more

Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA transcripts is driven by intron retention: implications for RNA-directed therapies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.21.212514

N/A

0DataRank · unranked

1 citations

Ulrich Braunschweig, Heera K. Langner, Katarzyna Jastrzębska, Michael J. Smallegan, Benjamin J. Blencowe +4 more

Myosin 7b is a regulatory long noncoding RNA (lncMYH7b) in the human heart

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.06.285189

N/A

0DataRank · unranked

1 citations

Michael J. Smallegan, Kevin M. Rigby, Jose S. Navarro-Arriola, Rusty L. Montgomery, John L. Rinn +2 more

Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages

Developmental Cell(2021)10.1016/j.devcel.2021.10.010

N/A

0DataRank · unranked

60 citations

Zachary D. Smith, Helene Kretzmer, John L. Rinn, Alexander Meissner, Daniel Andergassen

Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention

Nature Communications(2021)10.1038/s41467-021-23221-w

N/A

0DataRank · unranked

54 citations

Ulrich Braunschweig, Heera K. Langner, Michael J. Smallegan, Josep Biayna, Evan P. Hass +6 more

Genome-wide CRISPR interference screen identifies long non-coding RNA loci required for differentiation and pluripotency

PLoS ONE(2021)10.1371/journal.pone.0252848

N/A

0DataRank · unranked

33 citations

Kaia Mattioli, Chiara Gerhardinger, Philipp G. Maass, Daniel J. Foster, Paola Peinado +5 more

Myosin 7b is a regulatory long noncoding RNA (lncMYH7b) in the human heart

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100694

N/A

0DataRank · unranked

24 citations

Michael J. Smallegan, Kevin M. Rigby, Jose S. Navarro-Arriola, Rusty L. Montgomery, John L. Rinn +2 more

Defective insulin receptor signaling in hPSCs skews pluripotency and negatively perturbs neural differentiation

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100495

N/A

0DataRank · unranked

5 citations

Linh Nguyen, Manoj K. Gupta, Hwee Hui Lau, Larry Sai Weng Loo, Nicholas Jackson +8 more

Diverse mechanisms for epigenetic imprinting in mammals

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.30.442087

N/A

0DataRank · unranked

7 citations

Zachary D. Smith, John L. Rinn, Alexander Meissner, Daniel Andergassen

Genome-wide CRISPR interference screen identifies long non-coding RNA loci required for differentiation and pluripotency

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.08.430256

N/A

0DataRank · unranked

6 citations

Kaia Mattioli, Chiara Gerhardinger, Philipp G. Maass, Daniel J. Foster, Paola P. Fernandez +4 more

John L. Rinn

Indexed papers

Top data-sharing exemplar

Papers