Pilot corpus: NIH-funded biomedical datasets. Any DOI can be scored on demand — network effects sharpen as coverage grows.

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

Genes & Development(2011)10.1101/gad.17446611Source: DataRank Database

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses is a research paper published in Genes & Development (2011). On theSindex it has a DataRank of 1.2. It has been cited 3,660 times.

N/A

1.2DataRank · unranked

Scored on demand from live citation data

Open Access3,660 citations

Download PDF

Cite:

Linked data & code

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:OA: goldTopics (27)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

Run a calibrated FAIR evaluation for this paper →

We only score data papers we can read in full — never from an abstract alone.

DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

1.2

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

Learn more about DataRank methodology →

Authors (8)

Cole Trapnell ORCID,Barbara Tazon-Vega,Prisca Liberali ORCID,John L. Rinn ORCID,Loyal A. Goff ORCID

Live enrichment

PubMed:21890647 OpenAlex:https://openalex.org/W2160333540

goldLicense: other-oa

journalhttp://genesdev.cshlp.org/content/25/18/1915.full.pdf

publisherhttp://genesdev.cshlp.org/content/25/18/1915.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gad.17446611

journalhttps://doi.org/10.1101/gad.17446611

repositoryhttps://pubmed.ncbi.nlm.nih.gov/21890647

Fields of Study

Cancer-related molecular mechanisms researchRNA Research and SplicingRNA and protein synthesis mechanisms

MeSH Terms

Enhancer Elements, GeneticGene Expression RegulationGenes, OverlappingHumansSequence Homology, Nucleic AcidAlternative SplicingRNA, UntranslatedMolecular Sequence Annotation

Keywords

BiologyIntergenic regionComputational biologyGeneNon-coding RNAAnnotationRNAGeneticsGene AnnotationGenomeRNA-SeqORFSEvolutionary biologyGene expressionTranscriptomeOpen reading frame

Sustainable Development Goals

SDG 0: Life in Land

Additional file 1 of Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages

10.6084/m9.figshare.14211669.v1figshare

Additional file 1 of Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages

10.6084/m9.figshare.14211669figshare

Additional file 1 of CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

10.6084/m9.figshare.12057201.v1figshare

Additional file 1 of CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

10.6084/m9.figshare.12057201figshare

Additional file 5 of CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

10.6084/m9.figshare.12057216.v1figshare

Additional file 5 of CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

10.6084/m9.figshare.12057216figshare

Additional file 1 of Novel low-nitrogen stress-responsive long non-coding RNAs (lncRNA) in barley landrace B968 (Liuzhutouzidamai) at seedling stage

10.6084/m9.figshare.12097440.v1figshare

Additional file 1 of Novel low-nitrogen stress-responsive long non-coding RNAs (lncRNA) in barley landrace B968 (Liuzhutouzidamai) at seedling stage

10.6084/m9.figshare.12097440figshare

Additional file 10 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276956.v1figshare

Additional file 10 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276956figshare

Additional file 11 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276965.v1figshare

Additional file 11 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276965figshare

Additional file 12 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276968.v1figshare

Additional file 12 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276968figshare

Additional file 1 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276974.v1figshare

Additional file 1 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276974figshare

Additional file 2 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276983.v1figshare

Additional file 2 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276983figshare

Additional file 3 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276992.v1figshare

Additional file 3 of LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis

10.6084/m9.figshare.12276992figshare

Related Papers (10)

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

N/A

1.1DataRank · unranked

Nature Biotechnology(2010)

co-cited

10.1038/nbt.1633

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

Top 2%

8.5DataRank

Genome Research(2012)

co-cited

10.1101/gr.132159.111

Landscape of transcription in human cells

N/A

1.3DataRank · unranked

Nature(2012)

co-cited

10.1038/nature11233

lincRNAs act in the circuitry controlling pluripotency and differentiation

N/A

1.1DataRank · unranked

Nature(2011)

co-cited

10.1038/nature10398

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

N/A

1.2DataRank · unranked

Proceedings of the National Academy of Sciences(2009)

co-cited

10.1073/pnas.0904715106

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

N/A

1.5DataRank · unranked

Genome Biology(2009)

co-cited

10.1186/gb-2009-10-3-r25

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Top 1%

12.9DataRank

Nature(2007)

co-cited

10.1038/nature05874

GENCODE: The reference human genome annotation for The ENCODE Project

Top 1%

12.0DataRank

Genome Research(2012)

co-cited

10.1101/gr.135350.111

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

N/A

1.0DataRank · unranked

Bioinformatics(2011)

co-cited

10.1093/bioinformatics/btr209

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

N/A

1.5DataRank · unranked

Nature Biotechnology(2010)

co-cited

10.1038/nbt.1621