Harmen J. Bussemaker

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes”.

Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes

Nucleic Acids Research(2020)10.1093/nar/gkaa231

N/A

1.7DataRank · unranked

47 citations

H. Tomas Rube, Christopher A. Vakulskas, Mark A. Behlke, Harmen J. Bussemaker, Miles A. Pufall +1 more

Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins

Molecular Cell(2020)10.1016/j.molcel.2020.01.027

N/A

0DataRank · unranked

40 citations

Ryan Loker, Siqian Feng, Chaitanya Rastogi, Namiko Abe, H. Tomas Rube +3 more

Probing molecular specificity with deep sequencing and biophysically interpretable machine learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.30.450414

N/A

0DataRank · unranked

1 citations

Chaitanya Rastogi, Siqian Feng, Judith F. Kribelbauer, Allyson Li, Basheer Becerra +8 more

Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning

Nature Biotechnology(2022)10.1038/s41587-022-01307-0

N/A

0DataRank · unranked

136 citations

Chaitanya Rastogi, Siqian Feng, Judith F. Kribelbauer, Allyson Li, Basheer Becerra +8 more

Transcription factor regulation of eQTL activity across individuals and tissues

PLoS Genetics(2022)10.1371/journal.pgen.1009719

N/A

0DataRank · unranked

49 citations

Athena L. Tsu, Silva Kasela, Sarah Kim-Hellmuth, François Aguet, Kristin G. Ardlie +4 more

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

Nature Communications(2022)10.1038/s41467-022-31501-2

N/A

0DataRank · unranked

40 citations

Chaitanya Rastogi, Ryan Loker, William J. Glassford, H. Tomas Rube, Harmen J. Bussemaker +2 more

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.26.482133

N/A

0DataRank · unranked

5 citations

Chaitanya Rastogi, Ryan Loker, William J. Glassford, H. Tomas Rube, Harmen J. Bussemaker +2 more

Identifying Genetic Regulatory Variants that Affect Transcription Factor Activity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.21.513166

N/A

0DataRank · unranked

1 citations

Tuuli Lappalainen, Harmen J. Bussemaker, Xiaoting Li

Optimisation of TP53 reporters by systematic dissection of synthetic TP53 response elements

Nucleic Acids Research(2023)10.1093/nar/gkad718

N/A

0DataRank · unranked

10 citations

Chaitanya Rastogi, Stefano Giustino Manzo, Harmen J. Bussemaker, Bas van Steensel, Max Trauernicht

Identifying genetic regulatory variants that affect transcription factor activity

Cell Genomics(2023)10.1016/j.xgen.2023.100382

N/A

0DataRank · unranked

7 citations

Tuuli Lappalainen, Harmen J. Bussemaker, Xiaoting Li

Defining the fine structure of promoter activity on a genome-wide scale with CISSECTOR

Nucleic Acids Research(2023)10.1093/nar/gkad232

N/A

0DataRank · unranked

3 citations

Christ Leemans, Joris van Arensbergen, Bas van Steensel, Harmen J. Bussemaker, Vincent Fitzpatrick

Benchmarking DNA binding affinity models using allele-specific transcription factor binding data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.15.571887

N/A

0DataRank · unranked

0 citations

Lucas A. N. Melo, Harmen J. Bussemaker, Xiaoting Li

Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data

Genome biology(2024)10.1186/s13059-024-03424-2

N/A

0DataRank · unranked

2 citations

Lucas A. N. Melo, Harmen J. Bussemaker, Xiaoting Li

Accurate sequence-to-affinity models for SH2 domains from multi-round peptide binding assays coupled with free-energy regression

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.23.630085

N/A

0DataRank · unranked

0 citations

H. Tomas Rube, Chaitanya Rastogi, Lucas A. N. Melo, Xiaoting Li, Rashmi Voleti +3 more

Predicting the DNA binding specificity of transcription factor mutants using family-level biophysically interpretable machine learning

Nucleic Acids Research(2025)10.1093/nar/gkaf831

N/A

0DataRank · unranked

3 citations

Pilar Gomez-Alcala, Christ Leemans, William J. Glassford, Lucas A. N. Melo, Xiang‐Jun Lu +3 more

Accurate affinity models for SH2 domains from peptide binding assays and free‐energy regression

Protein Science(2025)10.1002/pro.70317

N/A

0DataRank · unranked

1 citations

H. Tomas Rube, Chaitanya Rastogi, Lucas A. N. Melo, Xiaoting Li, Rashmi Voleti +3 more