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Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data

Genome biology(2024)10.1186/s13059-024-03424-2Source: DataRank Database

Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data is a research paper published in Genome biology (2024). On theSindex it has a DataRank of 0. It has been cited 2 times.

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Open Access2 citations

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Enrichment:Funding (3 grants)Impact (FWCI 0.32)OA: goldTopics (43)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (3)

Lucas A. N. Melo ORCID,Harmen J. Bussemaker ORCID,Xiaoting Li ORCID

Live enrichment

PubMed:39482734 PMC:PMC11529166 OpenAlex:https://openalex.org/W4403945222

National Institute of Mental Health

Grant: R01MH106842

National Institutes of Health

Grant: 5R01MH106842-08

Integrative analysis of genetic variation and transcription factor networks to elucidate mechanisms of mental health disorders

Pharmaceutical Research and Manufacturers of America Foundation

FWCI

0.32

Citation Percentile

0.6%

Citation Trend

2025

goldLicense: cc-by-nc-nd

journalhttps://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-024-03424-2

publisherhttps://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-024-03424-2

publisherhttps://link.springer.com/content/pdf/10.1186/s13059-024-03424-2.pdf

publisherhttps://link.springer.com/article/10.1186/s13059-024-03424-2/fulltext.html

journalhttps://doi.org/10.1186/s13059-024-03424-2

Fields of Study

Genomics and Chromatin DynamicsGenomics and Rare DiseasesGene expression and cancer classification0206 medical engineering02 engineering and technology

MeSH Terms

Chromatin Immunoprecipitation SequencingAllelesBinding SitesDNAHumansProtein BindingTranscription FactorsBenchmarking

Keywords

BiologyGeneticsAlleleHuman geneticsComputational biologyTranscription factorDNA binding siteDNABenchmarkingGenePromoterGene expressionGene expression regulationTranscription factorsMotif discoveryStatistical ModelingNon-coding VariantsAllele-specific BindingBiophysically Interpretable Machine LearningCtcf, Ebf1, Pu.1/spi1Chip-seq, Chip-exo, Cut&tagBinding SitesQH301-705.5ResearchQH426-470HumansChromatin Immunoprecipitation SequencingBiology (General)AllelesProtein Binding

Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data

FAIR Checklist

Authors (3)

Funding (3 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)