Andrew F. Magee

Institute for Forecasting of the Slovak Academy of Sciences

Earth and Planetary SciencesBiochemistry, Genetics and Molecular BiologyMedicineMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “Data Integration in Bayesian Phylogenetics”.

Data Integration in Bayesian Phylogenetics

Annual Review of Statistics and Its Application(2022)10.1146/annurev-statistics-033021-112532

N/A

0.625DataRank · unranked

18 citations

Andrew F. Magee, Zhenyu Zhang, Guy Baele, Philippe Lemey, Xiang Ji +3 more

How Trustworthy Is Your Tree? Bayesian Phylogenetic Effective Sample Size Through the Lens of Monte Carlo Error

Bayesian Analysis(2023)10.1214/22-ba1339

N/A

0.518DataRank · unranked

10 citations

Michael Kärcher, Frederick A. Matsen, Volodymyr M. Minin, Andrew F. Magee

Robustness of phylogenetic inference to model misspecification caused by pairwise epistasis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.17.387365

N/A

0DataRank · unranked

1 citations

Sarah K. Hilton, William S. DeWitt, Andrew F. Magee

Robustness of Phylogenetic Inference to Model Misspecification Caused by Pairwise Epistasis

Molecular Biology and Evolution(2021)10.1093/molbev/msab163

N/A

0DataRank · unranked

13 citations

Sarah K. Hilton, William S. DeWitt, Andrew F. Magee

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

Science(2022)10.1126/science.abp8337

N/A

0DataRank · unranked

251 citations

Andrew F. Magee, Edyth Parker, Niema Moshiri, Katherine Izhikevich, Jennifer L. Havens +24 more

CRABS: Congruent rate analyses in birth–death scenarios

Methods in Ecology and Evolution(2022)10.1111/2041-210x.13997

N/A

0DataRank · unranked

27 citations

Bjørn Tore Kopperud, Andrew F. Magee, Sebastian Höhna

Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer

Nature Communications(2023)10.1038/s41467-023-40706-y

N/A

0DataRank · unranked

69 citations

Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey +24 more

Rapidly changing speciation and extinction rates can be inferred in spite of nonidentifiability

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2208851120

N/A

0DataRank · unranked

35 citations

Andrew F. Magee, Sebastian Höhna, Bjørn Tore Kopperud

Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer

Research Square(2023)10.21203/rs.3.rs-2574993/v1

N/A

0DataRank · unranked

19 citations

Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey +24 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548617

N/A

0DataRank · unranked

12 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Jennifer L. Havens +11 more

Random-effects substitution models for phylogenetics via scalable gradient approximations

arXiv (Cornell University)(2023)10.48550/arxiv.2303.13642

N/A

0DataRank · unranked

0 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Fredrick A. Matsen, Guy Baele +5 more

Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.31.564882

N/A

0DataRank · unranked

0 citations

Andrew F. Magee, Tetyana I. Vasylyeva, Marc A. Suchard, Yucai Shao

Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations

Systematic Biology(2024)10.1093/sysbio/syae019

N/A

0DataRank · unranked

8 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Frederick A. Matsen, Guy Baele +5 more

Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011640

N/A

0DataRank · unranked

5 citations

Andrew F. Magee, Tetyana I. Vasylyeva, Marc A. Suchard, Yucai Shao

On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2318989121

N/A

0DataRank · unranked

6 citations

Nathan Glatt-Holtz, Andrew J. Holbrook, Andrew F. Magee, Marc A. Suchard, Gustavo Didier

Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007999

N/A

0DataRank · unranked

52 citations

Sebastian Höhna, Tetyana I. Vasylyeva, Adam D. Leaché, Vladimir N. Minin, Andrew F. Magee

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

Cell(2025)10.1016/j.cell.2025.03.035

N/A

0DataRank · unranked

24 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Yu Wang +14 more

Horseshoe‐based Bayesian nonparametric estimation of effective population size trajectories

Biometrics(2020)10.1111/biom.13276

N/A

0DataRank · unranked

3 citations

Andrew F. Magee, Beth Shapiro, Vladimir N. Minin, James R. Faulkner