🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

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Authors
Alexander L. Greninger

Alexander L. Greninger

University of Washington Medical Center

ORCID: 0000-0002-7443-0527

Also affiliated with Fred Hutch Cancer Center

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.688Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Association Between Anterior Nasal and Plasma SARS-CoV-2 RNA Levels and Hospitalization or Death in Nonhospitalized Adults With Mild-to-Moderate COVID-19

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad287

Top 29%

0.688DataRank

Top 29%7 citations

Kara W Chew, Joseph J. Eron, Jonathan Z. Li, Mauricio Pinilla, Carlee Moser +32 more

Papers

Driven by 195 papers — median percentile 35. Top paper: “Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing”.

Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing

New England Journal of Medicine(2020)10.1056/nejmc2026172

N/A

14.8DataRank · unranked

809 citations

Alim Ladha, Makoto Saito, Nam-Gyun Kim, Ann E. Woolley, Michael Segel +18 more

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

Science(2020)10.1126/science.abb9263

N/A

13.4DataRank · unranked

308 citations

Wei Gu, Scot Federman, Louis du Plessis, Oliver Pybus, Nuno R. Faria +45 more

Hydroxychloroquine with or without azithromycin for treatment of early SARS-CoV-2 infection among high-risk outpatient adults: A randomized clinical trial

EClinicalMedicine(2021)10.1016/j.eclinm.2021.100773

N/A

2.8DataRank · unranked

65 citations

Elizabeth R. Brown, Jenell Stewart, Helen C. Stankiewicz Karita, Patricia Kissinger, John Dwyer +25 more

Symptom and Viral Rebound in Untreated SARS-CoV-2 Infection

Annals of Internal Medicine(2023)10.7326/m22-2381

N/A

2.0DataRank · unranked

63 citations

Manish C. Choudhary, Carlee Moser, Justin Ritz, Eric S. Daar, David A. Wohl +41 more

Efficacy, safety, and immunogenicity of a booster regimen of Ad26.COV2.S vaccine against COVID-19 (ENSEMBLE2): results of a randomised, double-blind, placebo-controlled, phase 3 trial

The Lancet Infectious Diseases(2022)10.1016/s1473-3099(22)00506-0

N/A

2.0DataRank · unranked

89 citations

An Vandebosch, Jerald Sadoff, Mathieu Le Gars, Carla Truyers, D. Lowson +95 more

Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial

Nature Microbiology(2022)10.1038/s41564-022-01254-1

N/A

1.6DataRank · unranked

53 citations

Kara W Chew, Rinki Deo, James P. Flynn, James Regan, Charles R. Crain +51 more

Viral Resistance Analyses From the Remdesivir Phase 3 Adaptive COVID-19 Treatment Trial-1 (ACTT-1)

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad270

N/A

0.990DataRank · unranked

34 citations

Lauren Rodriguez, Pavitra Roychoudhury, Meei‐Li Huang, Keith R. Jerome, Linhui Hao +9 more

Occurrence and Timing of Subsequent Severe Acute Respiratory Syndrome Coronavirus 2 Reverse-transcription Polymerase Chain Reaction Positivity Among Initially Negative Patients

Clinical Infectious Diseases(2020)10.1093/cid/ciaa722

N/A

0.708DataRank · unranked

111 citations

Saurabh Gombar, Catherine A. Hogan, Alexander L. Greninger, Vikas N. O’Reilly-Shah, Chloe Bryson‐Cahn +10 more

Association Between Anterior Nasal and Plasma SARS-CoV-2 RNA Levels and Hospitalization or Death in Nonhospitalized Adults With Mild-to-Moderate COVID-19

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad287

Top 29%

0.688DataRank

Top 29%7 citations

Kara W Chew, Joseph J. Eron, Jonathan Z. Li, Mauricio Pinilla, Carlee Moser +32 more

One Week of Oral Camostat Versus Placebo in Nonhospitalized Adults With Mild-to-Moderate Coronavirus Disease 2019: A Randomized Controlled Phase 2 Trial

Clinical Infectious Diseases(2023)10.1093/cid/ciad342

N/A

0.622DataRank · unranked

19 citations

Kara W Chew, Mark J Giganti, Eric S. Daar, David A. Wohl, Arzhang Cyrus Javan +47 more

The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters—King County, Washington

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac239

N/A

0.603DataRank · unranked

14 citations

Amanda M. Casto, Pavitra Roychoudhury, Peter D. Han, Hong Xie, Brian Pfau +17 more

Immune Status and SARS-CoV-2 Viral Dynamics

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad200

N/A

0.550DataRank · unranked

13 citations

Carlee Moser, Evgenia Aga, Judith S. Currier, David A. Wohl, Eric S. Daar +30 more

Early antiviral CD4+ and CD8+ T cells are associated with upper airway clearance of SARS-CoV-2

JCI Insight(2024)10.1172/jci.insight.186078

N/A

0.540DataRank · unranked

13 citations

Paul Lopez, Farhoud Faraji, Urvi M. Parikh, Amy Heaps, Justin Ritz +17 more

Comparing molnupiravir and nirmatrelvir/ritonavir efficacy and the effects on SARS-CoV-2 transmission in animal models

Nature Communications(2023)10.1038/s41467-023-40556-8

N/A

0.538DataRank · unranked

35 citations

Carolin M. Lieber, Josef D. Wolf, Amir-Hossein Karimi, Nicole A. P. Lieberman, Zachary M. Sticher +9 more

Therapeutic mitigation of measles-like immune amnesia and exacerbated disease after prior respiratory virus infections in ferrets

Nature Communications(2024)10.1038/s41467-024-45418-5

N/A

0.502DataRank · unranked

11 citations

Josef D. Wolf, Nicole A. P. Lieberman, Carolin M. Lieber, Hae-Ji Kang, Zachary M. Sticher +14 more

Phase 2 Safety and Antiviral Activity of SAB-185, a Novel Polyclonal Antibody Therapy for Nonhospitalized Adults With COVID-19

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad013

N/A

0.496DataRank · unranked

12 citations

Kara W Chew, Carlee Moser, David A. Wohl, Eric S. Daar, Jonathan Z. Li +42 more

Safety and Efficacy of Combined Tixagevimab and Cilgavimab Administered Intramuscularly or Intravenously in Nonhospitalized Patients With COVID-19

JAMA Network Open(2023)10.1001/jamanetworkopen.2023.10039

N/A

0.490DataRank · unranked

11 citations

Kara W Chew, Carlee Moser, Judith S. Currier, Joseph J. Eron, Arzhang Cyrus Javan +47 more

Statistical Challenges When Analyzing SARS-CoV-2 RNA Measurements Below the Assay Limit of Quantification in COVID-19 Clinical Trials

(2023)10.1093/infdis/jiad285

N/A

0.475DataRank · unranked

7 citations

Kara W Chew, Mark J Giganti, Jonathan Z. Li, Evgenia Aga, Justin Ritz +24 more

SARS-CoV-2 RNA and Nucleocapsid Antigen Are Blood Biomarkers Associated With Severe Disease Outcomes That Improve in Response to Remdesivir

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae198

N/A

0.439DataRank · unranked

13 citations

Kevin Rubenstein, Viviane Callier, Katy Shaw-Saliba, Adam Rupert, Robin Dewar +94 more

Efficacy of late-onset antiviral treatment in immunocompromised hosts with persistent SARS-CoV-2 infection

Journal of Virology(2024)10.1128/jvi.00905-24

N/A

0.397DataRank · unranked

11 citations

Hae-Ji Kang, Elizabeth B. Sobolik, Zachary M. Sticher, Vu L. Ngo, Andrew T. Gewirtz +6 more

Variant-Specific Viral Kinetics in Acute COVID-19

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad314

N/A

0.395DataRank · unranked

5 citations

Manish C. Choudhary, Rinki Deo, Mark J Giganti, Carlee Moser, Justin Ritz +26 more

How a paramyxovirus fusion/entry complex adapts to escape a neutralizing antibody

Nature Communications(2024)10.1038/s41467-024-53082-y

N/A

0.387DataRank · unranked

8 citations

Gillian Zipursky, Elizabeth B. Sobolik, Kate Golub, Emily K. Herman, Kyle Stearns +4 more

A high-throughput, polymerase-targeted RT-PCR for broad detection of mammalian filoviruses

Microbiology Spectrum(2024)10.1128/spectrum.01010-24

N/A

0.374DataRank · unranked

6 citations

Yaël Perez, Adam J. Hume, B. Ethan Nunley, Kevin Kong, Margaret G. Mills +3 more

Virology under the Microscope—a Call for Rational Discourse

mSphere(2023)10.1128/msphere.00034-23

N/A

0.360DataRank · unranked

10 citations

Anice C. Lowen, Seema S. Lakdawala, James C. Alwine, Arturo Casadevall, Michael J. Imperiale +95 more

Dynamics of SARS-CoV-2 VOC Neutralization and Novel mAb Reveal Protection against Omicron

Viruses(2023)10.3390/v15020530

N/A

0.345DataRank · unranked

9 citations

Tien-Ying Hsiang, Ronit R. Dalmat, Reneé C. Ireton, Jennifer F. Morton, Caleb Stokes +20 more

Long COVID After Bamlanivimab Treatment

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad286

N/A

0.251DataRank · unranked

4 citations

Carlee Moser, Nikolaus Jilg, Eunice Yeh, Busola Sanusi, David A. Wohl +32 more

Efficacy of the nucleoside analog 4′-Fluorouridine against Nipah virus in the Syrian hamster model

PLOS Pathogens(2026)10.1371/journal.ppat.1014093

N/A

0.241DataRank · unranked

4 citations

Madison L. Pearson, Terry L. Juelich, Jennifer K. Smith, Lihong Zhang, Carolin M. Lieber +15 more

Virology under the Microscope—a Call for Rational Discourse

mBio(2023)10.1128/mbio.00188-23

N/A

0.241DataRank · unranked

4 citations

Anice C. Lowen, Seema S. Lakdawala, James C. Alwine, Arturo Casadevall, Michael J. Imperiale +95 more

Efficacy, safety, and molecular response predictors of oral ixazomib and short-course rituximab in untreated iNHL

Blood Advances(2022)10.1182/bloodadvances.2022008628

N/A

0.240DataRank · unranked

3 citations

Ryan C. Lynch, Chaitra S. Ujjani, Ted Gooley, Heather Rasmussen, David G. Coffey +9 more

Safety and Efficacy of SAB-185 for Nonhospitalized Adults With COVID-19: A Randomized Clinical Trial

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae369

N/A

0.165DataRank · unranked

2 citations

Babafemi Taiwo, Carlee Moser, Eric S. Daar, David A. Wohl, Justin Ritz +46 more

Immune correlates analysis of antibody responses against SARS-CoV-2 variants in the ENSEMBLE vaccine efficacy trial

iScience(2025)10.1016/j.isci.2025.113660

N/A

0.104DataRank · unranked

1 citations

Youyi Fong, Lars van der Laan, Fei Heng, Ying Huang, Yiwen Lu +61 more

A human coronavirus evolves antigenically to escape antibody immunity

PLoS Pathogens(2021)10.1371/journal.ppat.1009453

N/A

0DataRank · unranked

251 citations

Katharine H. D. Crawford, Terry Stevens‐Ayers, Laurel Kelnhofer-Millevolte, Alexander L. Greninger, Janet A. Englund +3 more

SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98

mBio(2021)10.1128/mbio.00065-21

N/A

0DataRank · unranked

152 citations

Nicole A. P. Lieberman, Quynh Phung, Tien-Ying Hsiang, Hong Xie, Pavitra Roychoudhury +7 more

Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar

PLoS neglected tropical diseases(2021)10.1371/journal.pntd.0010063

N/A

0DataRank · unranked

89 citations

Michelle J. Lin, Hong Xie, Lasata Shrestha, Tien V. Nguyen, Meei‐Li Huang +28 more

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

Science Translational Medicine(2021)10.1126/scitranslmed.abf0202

N/A

0DataRank · unranked

80 citations

Cassia Wagner, Chris Frazar, Pavitra Roychoudhury, Jover Lee, Louise H. Moncla +38 more

Hospitalization and mortality associated with SARS-CoV-2 viral clades in COVID-19

Scientific Reports(2021)10.1038/s41598-021-82850-9

N/A

0DataRank · unranked

70 citations

Jolie Shen, Cecilia S. Lee, Aaron Lee, Emma A. Roberts, Paul D. Simonson +8 more

Genetic engineering of Treponema pallidum subsp. pallidum, the Syphilis Spirochete

PLoS Pathogens(2021)10.1371/journal.ppat.1009612

N/A

0DataRank · unranked

61 citations

Lauren C. Tantalo, Nicole A. P. Lieberman, Quynh Phung, Alexander L. Greninger, Lorenzo Giacani +1 more

Variants of Concern Are Overrepresented Among Postvaccination Breakthrough Infections of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Washington State

Clinical Infectious Diseases(2021)10.1093/cid/ciab581

N/A

0DataRank · unranked

46 citations

Seth A. Cohen, Chloe Bryson‐Cahn, Catherine Liu, Steven A. Pergam, John B. Lynch +16 more

Molecular Features of the Measles Virus Viral Fusion Complex That Favor Infection and Spread in the Brain

mBio(2021)10.1128/mbio.00799-21

N/A

0DataRank · unranked

43 citations

Francesca T. Bovier, Marion Ferren, Nicole A. P. Lieberman, Camilla Predella, Alexandre Lalande +14 more

In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19

Scientific Reports(2021)10.1038/s41598-021-83730-y

N/A

0DataRank · unranked

33 citations

Sandhya Subramanian, David E. Kim, Michael Murphy, Deleah Pettie, Lauren Carter +20 more

Development of the RealTime SARS-CoV-2 quantitative Laboratory Developed Test and correlation with viral culture as a measure of infectivity

Journal of Clinical Virology(2021)10.1016/j.jcv.2021.104945

N/A

0DataRank · unranked

30 citations

Wei Zhen, Danijela Lucic, Emily Degli-Angeli, Mark S. Anderson, Kenn Forberg +8 more

Human parainfluenza virus evolution during lung infection of immunocompromised individuals promotes viral persistence

Journal of Clinical Investigation(2021)10.1172/jci150506

N/A

0DataRank · unranked

29 citations

Ksenia Rybkina, Michelle J. Lin, Jennifer Drew-Bear, Tara C. Marcink, Ryan C. Shean +10 more

RADx Variant Task Force Program for Assessing the Impact of Variants on SARS-CoV-2 Molecular and Antigen Tests

IEEE Open Journal of Engineering in Medicine and Biology(2021)10.1109/ojemb.2021.3116490

N/A

0DataRank · unranked

13 citations

John Blackwood, T Pribýl, Leda Bassit, Anuradha Rao, Morgan Greenleaf +13 more

Reducing COVID-19 quarantine with SARS-CoV-2 testing: a simulation study

BMJ Open(2021)10.1136/bmjopen-2021-050473

N/A

0DataRank · unranked

12 citations

Wen Zhou, Rowland W. Pettit, Patrick Yu, Peter G. Matos, Alexander L. Greninger +3 more

Rapid adaptation to human protein kinase R by a unique genomic rearrangement in rhesus cytomegalovirus

PLoS Pathogens(2021)10.1371/journal.ppat.1009088

N/A

0DataRank · unranked

10 citations

Alexander L. Greninger, Adam P. Geballe, Stephanie J. Child

Clinical and Virologic Characteristics and Outcomes of Coronavirus Disease 2019 at a Cancer Center

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab193

N/A

0DataRank · unranked

5 citations

Juhye Lee, Elizabeth M. Krantz, Jessica Morris, Sara Marquis, Pooja Bhattacharyya +11 more

Modifying laboratory testing via home brew during the COVID-19 pandemic

Journal of Clinical and Translational Science(2021)10.1017/cts.2021.5

N/A

0DataRank · unranked

3 citations

Larry G. Kessler, Jennifer S. Moylan, J. Craig Forrest, Karl W. Boehme, Josh L. Kennedy +5 more

Quantitative measurement of infectious virus in SARS-CoV-2 Alpha, Delta and Epsilon variants reveals higher infectivity (viral titer:RNA ratio) in clinical samples containing the Delta and Epsilon variants

medRxiv(2021)10.1101/2021.09.07.21263229

N/A

0DataRank · unranked

39 citations

Margaret G. Mills, David J. Shirley, Madaline M. Schmidt, Meei‐Li Huang, Keith R. Jerome +3 more

Efficacy and Safety of NVX-CoV2373 in Adults in the United States and Mexico

medRxiv(2021)10.1101/2021.10.05.21264567

N/A

0DataRank · unranked

37 citations

Karen L. Kotloff, Cynthia L. Gay, Germán Áñez, Jeffrey Adelglass, Alejandro Quintín Barrat Hernández +29 more

Variants of concern are overrepresented among post-vaccination breakthrough infections of SARS-CoV-2 in Washington State

medRxiv(2021)10.1101/2021.05.23.21257679

N/A

0DataRank · unranked

31 citations

Seth A. Cohen, Chloe Bryson‐Cahn, Catherine Liu, Steven A. Pergam, John B. Lynch +16 more

SARS-CoV-2 B.1.1.7 and B.1.351 variants of concern induce lethal disease in K18-hACE2 transgenic mice despite convalescent plasma therapy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.05.442784

N/A

0DataRank · unranked

27 citations

Chengjin Ye, Ting Y. Wong, Brynnan P. Russ, Katherine S. Lee, Michael T. Winters +12 more

Emergence of SARS-CoV-2 Resistance with Monoclonal Antibody Therapy

medRxiv(2021)10.1101/2021.09.03.21263105

N/A

0DataRank · unranked

21 citations

Kara W Chew, Rinki Deo, James P. Flynn, James Regan, Charles R. Crain +23 more

T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibody titers and disease severity

medRxiv(2021)10.1101/2021.03.19.21251426

N/A

0DataRank · unranked

10 citations

Thomas M. Snyder, Sudeb C. Dalai, Rachel M. Gittelman, Jim Boonyaratanakornkit, Anna Wald +13 more

Phylogenetic estimates of SARS-CoV-2 introductions into Washington State

medRxiv(2021)10.1101/2021.04.05.21254924

N/A

0DataRank · unranked

9 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lasata Shrestha, Hong Xie, Keith R. Jerome +5 more

De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: A case report

medRxiv(2021)10.1101/2021.11.08.21266069

N/A

0DataRank · unranked

9 citations

Jon Klein, Alexander J. Robertson, Mario A. Peña-Hernández, Michelle J. Lin, Pavitra Roychoudhury +18 more

Predicting Infectivity: Comparing Four PCR-based Assays to Detect Culturable SARS-CoV-2 in Clinical Samples

medRxiv(2021)10.1101/2021.07.14.21260544

N/A

0DataRank · unranked

7 citations

Margaret G. Mills, Reigran Sampoleo, Garrett A. Perchetti, Meei‐Li Huang, Hannah W. Despres +5 more

Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection

medRxiv(2021)10.1101/2021.12.25.21268211

N/A

0DataRank · unranked

6 citations

Kara W Chew, Manish C. Choudhary, Rinki Deo, James Regan, James P. Flynn +20 more

Genetic Engineering of Treponema pallidum subsp. pallidum , the Syphilis Spirochete

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.07.443079

N/A

0DataRank · unranked

5 citations

Lauren C. Tantalo, Nicole A. P. Lieberman, Quynh Phung, Alexander L. Greninger, Lorenzo Giacani +1 more

Clinical performance characteristics of the Swift Normalase Amplicon Panel for sensitive recovery of SARS-CoV-2 genomes

medRxiv(2021)10.1101/2021.10.22.21265255

N/A

0DataRank · unranked

1 citations

Michelle J. Lin, Hong Xie, Margaret G. Mills, Shah A. Mohamed Bakhash, Vinod P. Gaur +9 more

Oral prodrug of remdesivir parent GS-441524 is efficacious against SARS-CoV-2 and a variant of concern in ferrets

Research Square(2021)10.21203/rs.3.rs-662905/v1

N/A

0DataRank · unranked

0 citations

Robert M. Cox, Josef D. Wolf, Carolin M. Lieber, Julien Sourimant, Michelle J. Lin +13 more

Variants in nucleocapsid protein and endoRNase are found to associate with severe COVID-19 in a case-control study in Washington State, USA

Research Square(2021)10.21203/rs.3.rs-888049/v1

N/A

0DataRank · unranked

0 citations

Pavitra Roychoudhury, Keith R. Jerome, Peter B. Gilbert, Joshua T. Schiffer, Terry P. Lybrand +13 more

Variants in nucleocapsid protein and endoRNase are found to associate with severe COVID-19 in a case-control study in Washington State, USA

Research Square(2021)10.21203/rs.3.rs-888049/v2

N/A

0DataRank · unranked

0 citations

Pavitra Roychoudhury, Keith R. Jerome, Peter B. Gilbert, Joshua T. Schiffer, Terry P. Lybrand +13 more

De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report

Nature Communications(2022)10.1038/s41467-022-29104-y

N/A

0DataRank · unranked

312 citations

Jon Klein, Alexander J. Robertson, Mario A. Peña-Hernández, Michelle J. Lin, Pavitra Roychoudhury +18 more

Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination

Med(2022)10.1016/j.medj.2022.10.002

N/A

0DataRank · unranked

85 citations

Tracy Basler, Simon White, Andrew Dei Rossi, Dana Wyman, Hang Dai +25 more

Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study

Clinical Infectious Diseases(2022)10.1093/cid/ciac279

N/A

0DataRank · unranked

80 citations

Stephanie M. Lunn, Michael Famulare, Lauren Frisbie, Ian Painter, Roy Burstein +40 more

Successful Treatment of Prolonged, Severe Coronavirus Disease 2019 Lower Respiratory Tract Disease in a B cell Acute Lymphoblastic Leukemia Patient With an Extended Course of Remdesivir and Nirmatrelvir/Ritonavir

Clinical Infectious Diseases(2022)10.1093/cid/ciac868

N/A

0DataRank · unranked

72 citations

William Simmons, Ellora Karmarkar, Leah H Yoke, Ayodale B Braimah, Johnnie J. Orozco +15 more

SARS-CoV-2 VOC type and biological sex affect molnupiravir efficacy in severe COVID-19 dwarf hamster model

Nature Communications(2022)10.1038/s41467-022-32045-1

N/A

0DataRank · unranked

51 citations

Robert M. Cox, Julien Sourimant, Josef D. Wolf, Kate B. Juergens, Quynh Phung +10 more

T cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibodies and disease severity

JCI Insight(2022)10.1172/jci.insight.150070

N/A

0DataRank · unranked

49 citations

Thomas M. Snyder, Sudeb C. Dalai, Rachel M. Gittelman, Jim Boonyaratanakornkit, Anna Wald +17 more

Replicating RNA platform enables rapid response to the SARS-CoV-2 Omicron variant and elicits enhanced protection in naïve hamsters compared to ancestral vaccine

EBioMedicine(2022)10.1016/j.ebiom.2022.104196

N/A

0DataRank · unranked

44 citations

Kimberly Meade‐White, Chad S. Clancy, Jacob Archer, Troy Hinkley, Shanna Leventhal +17 more

Thermodynamically coupled biosensors for detecting neutralizing antibodies against SARS-CoV-2 variants

Nature Biotechnology(2022)10.1038/s41587-022-01280-8

N/A

0DataRank · unranked

33 citations

Hsien‐Wei Yeh, Alexandra C. Walls, Basile I. M. Wicky, Kaitlin R. Sprouse, Laura A. VanBlargan +19 more

Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat

Virus Evolution(2022)10.1093/ve/veac052

N/A

0DataRank · unranked

21 citations

Pavitra Roychoudhury, Hong Xie, Lasata Shrestha, Amin Addetia, Keith R. Jerome +3 more

Evaluating Antibody Mediated Protection against Alpha, Beta, and Delta SARS-CoV-2 Variants of Concern in K18-hACE2 Transgenic Mice

Journal of Virology(2022)10.1128/jvi.02184-21

N/A

0DataRank · unranked

20 citations

Alexander M. Horspool, Brynnan P. Russ, Chengjin Ye, Katherine S. Lee, Michael T. Winters +16 more

Mutations in viral nucleocapsid protein and endoRNase are discovered to associate with COVID19 hospitalization risk

Scientific Reports(2022)10.1038/s41598-021-04376-4

N/A

0DataRank · unranked

19 citations

Pavitra Roychoudhury, Peter B. Gilbert, Joshua T. Schiffer, Terry P. Lybrand, Thomas H. Payne +13 more

Clinical Performance Characteristics of the Swift Normalase Amplicon Panel for Sensitive Recovery of Severe Acute Respiratory Syndrome Coronavirus 2 Genomes

Journal of Molecular Diagnostics(2022)10.1016/j.jmoldx.2022.05.007

N/A

0DataRank · unranked

18 citations

Michelle J. Lin, Hong Xie, Margaret G. Mills, Shah A. Mohamed Bakhash, Vinod P. Gaur +9 more

Nebulized fusion inhibitory peptide protects cynomolgus macaques from measles virus infection

Nature Communications(2022)10.1038/s41467-022-33832-6

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13 citations

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Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100678

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Kara W Chew, Manish C. Choudhary, Rinki Deo, James Regan, James P. Flynn +19 more

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mBio(2022)10.1128/mbio.03831-21

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Journal of Molecular Diagnostics(2022)10.1016/j.jmoldx.2022.01.007

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International Journal of Infectious Diseases(2022)10.1016/j.ijid.2022.02.009

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Scientific Reports(2022)10.1038/s41598-022-09752-2

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Journal of Clinical Investigation(2022)10.1172/jci161109

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The Journal of Infectious Diseases(2022)10.1093/infdis/jiac048

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Tracy Qi Dong, Vaidehi Agrawal, Margaret G. Mills, Meei Li Huang, Alexander L. Greninger +17 more

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Frontiers in Immunology(2022)10.3389/fimmu.2022.811551

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Journal of Medical Virology(2022)10.1002/jmv.28054

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Moni B. Neradilek, Ruanne V. Barnabas, Jenell Stewart, Helen C. Stankiewicz Karita, Raphael J. Landovitz +12 more

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medRxiv(2022)10.1101/2022.03.09.22272113

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medRxiv(2022)10.1101/2022.08.01.22278278

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medRxiv(2022)10.1101/2022.01.08.22268865

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5 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.20.517271

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bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.09.479546

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4 citations

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medRxiv(2022)10.1101/2022.08.12.22278720

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2 citations

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Research Square(2022)10.21203/rs.3.rs-1700877/v1

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1 citations

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medRxiv(2022)10.1101/2022.11.12.22282254

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0 citations

Kate B. Juergens, Jolene Gov, Carter J. McCormick, Reigran Sampoleo, Alisa Kachikis +6 more

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Annals of the American Thoracic Society(2023)10.1513/annalsats.202212-1019st

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Kristina Crothers, Stefano Aliberti, Anne Bergeron, Michael Boeckh, Jason W. Chien +23 more

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The Lancet Microbe(2023)10.1016/s2666-5247(23)00219-7

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Bone Marrow Transplantation(2023)10.1038/s41409-023-01920-w

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Subnanometer structure of an enveloped virus fusion complex on viral surface reveals new entry mechanisms

Science Advances(2023)10.1126/sciadv.ade2727

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Nature Immunology(2023)10.1038/s41590-023-01692-x

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32 citations

Koshlan Mayer-Blackwell, Lichen Jing, Kerry J. Laing, Anton M. Sholukh, Russell St. Germain +23 more

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Journal of Clinical Virology(2023)10.1016/j.jcv.2023.105420

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22 citations

Ronit R. Dalmat, Linhui Hao, Meagan J. Bemer, Elvira Budiawan, Jennifer F. Morton +21 more

Treponema pallidum subsp. pallidum with an Artificially impaired TprK antigenic variation system is attenuated in the Rabbit model of syphilis

PLoS Pathogens(2023)10.1371/journal.ppat.1011259

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Clinical Infectious Diseases(2023)10.1093/cid/ciad265

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Huichao Chen, Ashley McKhann, Jhoanna Roa, Alyssa Vecchio, Eric S. Daar +19 more

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Journal of Clinical Microbiology(2023)10.1128/jcm.00138-23

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Adrianna Westbrook, Leda Bassit, Richard Parsons, Eric C. Fitts, Morgan Greenleaf +18 more

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The Journal of Infectious Diseases(2023)10.1093/infdis/jiad368

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14 citations

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The Journal of Infectious Diseases(2023)10.1093/infdis/jiad592

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9 citations

Erica Wetzler, Morgan C Aurelio, Jaclyn N Escudero, Stacy S Selke, Alexander L. Greninger +9 more

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Scientific Reports(2023)10.1038/s41598-023-39232-0

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8 citations

Margaret G. Mills, Madaline M. Schmidt, Jolene Gov, Yaël Perez, Mars Jindrich +51 more

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The Journal of Infectious Diseases(2023)10.1093/infdis/jiad284

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Journal of Clinical Virology(2023)10.1016/j.jcv.2023.105632

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5 citations

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Microbiology Spectrum(2023)10.1128/spectrum.00064-23

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4 citations

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Scientific Reports(2023)10.1038/s41598-023-29087-w

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1 citations

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Journal of Virology(2023)10.1128/jvi.00089-23

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20 citations

Anice C. Lowen, Seema S. Lakdawala, James C. Alwine, Arturo Casadevall, Michael J. Imperiale +95 more

Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571235

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13 citations

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Surveillance of Vermont wildlife in 2021-2022 reveals no detected SARS-CoV-2 viral RNA

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.25.538264

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4 citations

Margaret G. Mills, Madaline M. Schmidt, Jolene Gov, Yaël Perez, Mars Jindrich +50 more

Treponema pallidum subsp. pallidum with an Artificially Impaired TprK Antigenic Variation System is Attenuated in the Rabbit Model of Syphilis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.18.524629

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3 citations

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Within-host rhinovirus evolution in upper and lower respiratory tract highlights capsid variability and mutation-independent compartmentalization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.11.540440

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3 citations

Stephanie Goya, Carlos Avendaño, Jason Rupp, Jane Kuypers, Keith R. Jerome +4 more

Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution

medRxiv(2023)10.1101/2023.09.21.23295927

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3 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.25.564014

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3 citations

Paul Lopez, Farhoud Faraji, Urvi M. Parikh, Amy Heaps, Justin Ritz +17 more

Statistical Challenges when Analyzing SARS-CoV-2 RNA Measurements Below the Assay Limit of Quantification in COVID-19 Clinical Trials

medRxiv(2023)10.1101/2023.03.13.23287208

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2 citations

Kara W Chew, Mark J Giganti, Jonathan Z. Li, Evgenia Aga, Justin Ritz +10 more

Therapeutic mitigation of measles-like immune amnesia and exacerbated disease after prior respiratory virus infections in ferrets

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.01.555992

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1 citations

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The Antiviral Mechanism of Action of Molnupiravir in Humans with COVID-19

medRxiv(2023)10.1101/2023.11.21.23298766

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1 citations

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UNC Libraries(2023)10.17615/s90c-rs31

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0 citations

Jonathan Z. Li, Paul Klekotka, James P. Flynn, Joseph J. Eron, Justin Ritz +23 more

Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features

Research Square(2023)10.21203/rs.3.rs-2743022/v1

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0 citations

Li Li, Allan C. deCamp, Morgane Rolland, Michal Juraska, Brian D. Williamson +38 more

Influenza A virus resistance to 4’-fluorouridine coincides with viral attenuation in vitro and in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.20.563370

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0 citations

Hae-Ji Kang, Megha Aggarwal, Nicole A. P. Lieberman, Elizabeth B. Sobolik, Jeong-Joong Yoon +5 more

Incidence and Management of COVID-19 Infections in Vaccinated Patients with CLL

Blood(2023)10.1182/blood-2023-173992

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0 citations

Ted Gooley, Tanya Siddiqi, Deborah M. Stephens, Catherine M. Broome, Stephen E. Spurgeon +18 more

Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin

Cell Host & Microbe(2024)10.1016/j.chom.2024.06.015

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40 citations

Rachel Eguia, Juhye Lee, Hugh K. Haddox, Jared Galloway, Nguyen Van Vinh Chau +14 more

Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution

Nature Communications(2024)10.1038/s41467-024-47599-5

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27 citations

Kathryn E. Kistler, Garrett A. Perchetti, Noah Baker, Lauren Frisbie, Laura Marcela Torres +9 more

A neutralizing antibody prevents postfusion transition of measles virus fusion protein

Science(2024)10.1126/science.adm8693

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25 citations

Roberta Della Marca, Gele Niemeyer, Gillian Zipursky, Kyle Stearns, Cameron Leedale +17 more

Influenza A virus resistance to 4’-fluorouridine coincides with viral attenuation in vitro and in vivo

PLoS Pathogens(2024)10.1371/journal.ppat.1011993

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20 citations

Hae-Ji Kang, Megha Aggarwal, Nicole A. P. Lieberman, Elizabeth B. Sobolik, Jeong-Joong Yoon +5 more

Near-Universal Resistance to Macrolides of Treponema pallidum in North America

New England Journal of Medicine(2024)10.1056/nejmc2314441

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17 citations

Tara B. Reid, Chase A. Cannon, B. Ethan Nunley, Anna Berzkalns, Stephanie E. Cohen +22 more

Human parainfluenza virus 3 field strains undergo extracellular fusion protein cleavage to activate entry

mBio(2024)10.1128/mbio.02327-24

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8 citations

George D. Lampe, Rachel Hanan, Tara C. Marcink, Stefan Niewiesk, Samuel H. Sternberg +4 more

Timing of Maternal COVID-19 Vaccine and Antibody Concentrations in Infants Born Preterm

JAMA Network Open(2024)10.1001/jamanetworkopen.2023.52387

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15 citations

Mindy Pike, Linda O. Eckert, Emma A. Roberts, Yael Frank, Amber Lynn Young +5 more

CMV reactivation during pretransplantation evaluation: a novel risk factor for posttransplantation CMV reactivation

Blood Advances(2024)10.1182/bloodadvances.2023012234

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15 citations

Hu Xie, Alicja Sadowska‐Klasa, Eleftheria Kampouri, Melinda A. Biernacki, Masumi Ueda +12 more

Outcomes in Hematopoietic Cell Transplant and Chimeric Antigen Receptor T-Cell Therapy Recipients With Pre–Cellular Therapy SARS-CoV-2 Infection

Clinical Infectious Diseases(2024)10.1093/cid/ciae116

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13 citations

Leah H Yoke, Pavitra Roychoudhury, Patrick W Flaherty, Masumi Ueda Oshima, Amelia Weixler +7 more

Functional and structural basis of human parainfluenza virus type 3 neutralization with human monoclonal antibodies

Nature Microbiology(2024)10.1038/s41564-024-01722-w

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13 citations

Ana Rita Otrelo-Cardoso, Nurgun Kose, YaoXiong Hu, Elad Binshtein, Rachael M. Wolters +7 more

SARS-CoV-2 Monoclonal Antibody Treatment Followed by Vaccination Shifts Human Memory B-Cell Epitope Recognition, Suggesting Antibody Feedback

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae371

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13 citations

Sydney I. Ramirez, Hallie Cohn, Urvi M. Parikh, Amy Heaps, Scott F. Sieg +22 more

Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features

Nature Communications(2024)10.1038/s41467-024-46536-w

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12 citations

Li Li, Allan C. deCamp, Morgane Rolland, Michal Juraska, Brian D. Williamson +45 more

The harms of promoting the lab leak hypothesis for SARS-CoV-2 origins without evidence

Journal of Virology(2024)10.1128/jvi.01240-24

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12 citations

Felicia Goodrum, Bruce W. Banfield, David C. Bloom, William J. Britt, Andrew J. Broadbent +36 more

Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county

PLoS Pathogens(2024)10.1371/journal.ppat.1012117

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10 citations

Amanda C. Perofsky, Lauren Frisbie, Louise H. Moncla, Pavitra Roychoudhury, Hong Xie +26 more

Treponema pallidum Periplasmic and Membrane Proteins Are Recognized by Circulating and Skin CD4+ T Cells

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae245

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9 citations

Charmie Godornes, Victoria Campbell, Kerry J. Laing, Lauren C. Tantalo, Alloysius Gomez +15 more

Characterization of Treatment Resistance and Viral Kinetics in the Setting of Single-Active Versus Dual-Active Monoclonal Antibodies Against Severe Acute Respiratory Syndrome Coronavirus 2

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae192

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7 citations

Rinki Deo, Teresa H. Evering, Kara W Chew, Mark J Giganti, Carlee Moser +17 more

Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Subvariant Neutralization Following a Primary Vaccine Series of NVX-CoV2373 and BNT162b2 Monovalent Booster Vaccine

Open Forum Infectious Diseases(2024)10.1093/ofid/ofad673

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4 citations

Xiaoying Shen, R. Scott McClelland, Zijun Wang, Stacy Selke, Chloe Wilkens +11 more

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The Journal of Infectious Diseases(2024)10.1093/infdis/jiae301

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2 citations

Lauren E. Gentles, Leanne Kehoe, Amanda Adler, Kirsten Lacombe, Jane A. Dickerson +9 more

Mutations in chikungunya virus nsP4 decrease viral fitness and sensitivity to the broad-spectrum antiviral 4′-Fluorouridine

PLoS Pathogens(2025)10.1371/journal.ppat.1012859

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16 citations

Elizabeth B. Sobolik, Nicholas May, Sainan Wang, Atef Fayed, Dariia Vyshenska +8 more

RSV F evolution escapes some monoclonal antibodies but does not strongly erode neutralization by human polyclonal sera

Journal of Virology(2025)10.1128/jvi.00531-25

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12 citations

Teagan E. McMahon, Xiaohui Ju, Timothy C. Yu, Natalie Brunette, Terry Stevens‐Ayers +5 more

Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences

Nature(2025)10.1038/s41586-025-08637-4

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12 citations

Miguel I. Paredes, Amanda C. Perofsky, Lauren Frisbie, Hong Xie, Kevin Kong +21 more

Intranasally administrated fusion-inhibitory lipopeptides block SARS-CoV-2 infection in mice and enable long-term protective immunity

Communications Biology(2025)10.1038/s42003-025-07491-4

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9 citations

Valérie Favède, Camilla Predella, Olivier Reynard, Stéphanie Durand, Magalie Mazelier +20 more

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Virus Evolution(2025)10.1093/ve/veaf086

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5 citations

John Huddleston, Andrea N. Loes, S. Richard Turner, Jover Lee, Ian Barr +15 more

Differentiating mpox infection and vaccination using a validated multiplex orthopoxvirus IgG serology assay

Journal of Clinical Microbiology(2025)10.1128/jcm.01548-25

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1 citations

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Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf542

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1 citations

Manish C. Choudhary, Owen T. Glover, Rachel Bender Ignacio, Julie Boucau, Kara W Chew +21 more

SIV/SARS-CoV-2 coinfection in rhesus macaques impacts viral shedding, host immunity, the microbiome, and viral evolution

Frontiers in Immunology(2025)10.3389/fimmu.2025.1587688

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1 citations

Zohar Kolodner, Adam Waalkes, Kaitlin Sawatzki, Linhui Hao, Dustin R. Long +13 more

Transplacental transfer of maternal SARS-CoV-2 antibodies in dichorionic and monochorionic twin pregnancies

PLoS ONE(2025)10.1371/journal.pone.0328137

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1 citations

Monica Sosa, Mindy Pike, Alexis Baranoff, Ava Lekander, Hye Cho +6 more

Chikungunya virus persists in joint associated macrophages and promotes chronic disease

Research Square(2025)10.21203/rs.3.rs-6917990/v1

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10 citations

Kristen Zarrella, Ryan M. Sheridan, Brian C. Ware, Bennett Davenport, Mariana da Silva +8 more

A luminescent attenuated SARS-CoV-2 for the identification and validation of drug-resistant mutants

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.09.653029

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2 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.08.679836

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1 citations

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