Ali Shilatifard

Also affiliated with Chan Zuckerberg Initiative (United States)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 46 papers. Top paper: “TurboCas: A method for locus-specific labeling of genomic regions and isolating their associated protein interactome”.

TurboCas: A method for locus-specific labeling of genomic regions and isolating their associated protein interactome

Molecular Cell(2024)10.1016/j.molcel.2024.11.007

N/A

0.465DataRank · unranked

15 citations

Yuki Aoi, Marta Iwanaszko, Benjamin C. Howard, Marc A. Morgan, Grant D. Andersen +3 more

Lung transplantation for patients with severe COVID-19

Science Translational Medicine(2020)10.1126/scitranslmed.abe4282

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0DataRank · unranked

335 citations

Melissa Querrey, Nikolay S. Markov, Samuel S. Kim, Chitaru Kurihara, Rafael Garza‐Castillon +10 more

The Human Integrator Complex Facilitates Transcriptional Elongation by Endonucleolytic Cleavage of Nascent Transcripts

Cell Reports(2020)10.1016/j.celrep.2020.107917

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0DataRank · unranked

132 citations

Ezra Blumenthal, Lucas F. daSilva, Yuki Aoi, Pradeep Reddy Cingaram, Jingyin Yue +7 more

Coordinated regulation of cellular identity–associated H3K4me3 breadth by the COMPASS family

Science Advances(2020)10.1126/sciadv.aaz4764

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0DataRank · unranked

68 citations

Patrick A. Ozark, Kaixiang Cao, Michal Ugarenko, Siddhartha Das, Lu Wang +8 more

Targeting DNA Methylation Depletes Uterine Leiomyoma Stem Cell–enriched Population by Stimulating Their Differentiation

Endocrinology(2020)10.1210/endocr/bqaa143

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0DataRank · unranked

21 citations

Ping Yin, Jingting Xu, Ariel J. Dotts, Stacy Kujawa, John S. Coon +5 more

NCI-CONNECT: Comprehensive Oncology Network Evaluating Rare CNS Tumors—Histone Mutated Midline Glioma Workshop Proceedings*

Neuro-Oncology Advances(2020)10.1093/noajnl/vdaa007

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0DataRank · unranked

13 citations

Yamini Dalal, Michelle Monje, Ali Shilatifard, Mario L. Suvà, Orwa Aboud +11 more

Histone H2BK123 monoubiquitination is the critical determinant for H3K4 and H3K79 trimethylation by COMPASS and Dot1

UNC Libraries(2020)10.17615/8bj6-2726

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0DataRank · unranked

10 citations

Jennifer M. Gardner, Zu-Wen Sun, Yoh Hei Takahashi, Sue L. Jaspersen, Brian D. Strahl +6 more

A small UTX stabilization domain of Trr is conserved within mammalian MLL3-4/COMPASS and is sufficient to rescue loss of viability in null animals

Genes & Development(2020)10.1101/gad.339762.120

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0DataRank · unranked

32 citations

Lu Wang, Marta Iwanaszko, Patrick A. Ozark, Marc A. Morgan, Andrea Piunti +7 more

Alveolitis in severe SARS-CoV-2 pneumonia is driven by self-sustaining circuits between infected alveolar macrophages and T cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.238188

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0DataRank · unranked

25 citations

Luisa Morales‐Nebreda, Nikolay S. Markov, Suchitra Swaminathan, Estefany Rios-Guzman, Darryl A. Abbott +30 more

A pilot study of tazemetostat and MK-3475 (pembrolizumab) in advanced urothelial carcinoma (ETCTN 10183).

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.6_suppl.tps607

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0DataRank · unranked

11 citations

Ali Shilatifard, Stephen D. Miller, Alicia K. Morgans, David James VanderWeele, Masha Kocherginsky +2 more

Decoding the Protein Composition of Whole Nucleosomes with Nuc-MS

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.08.287656

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0DataRank · unranked

7 citations

Kevin Jooβ, Marc A. Morgan, Andrea Piunti, Matthew J. Meiners, Alexander Lee +9 more

Epigenomic landscape and 3D genome structure in pediatric high-grade glioma

Science Advances(2021)10.1126/sciadv.abg4126

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0DataRank · unranked

93 citations

Tina Huang, Ye Hou, Elizabeth T. Bartom, Xinyan Lu, Ali Shilatifard +3 more

Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia

Nature(2021)10.1038/s41586-020-03148-w

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0DataRank · unranked

778 citations

Luisa Morales‐Nebreda, Nikolay S. Markov, Suchitra Swaminathan, Melissa Querrey, Estefany Rios-Guzman +59 more

SPT5 stabilization of promoter-proximal RNA polymerase II

Molecular Cell(2021)10.1016/j.molcel.2021.08.006

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0DataRank · unranked

107 citations

Yoh-hei Takahashi, Avani P. Shah, Marta Iwanaszko, Emily J. Rendleman, Nabiha Khan +6 more

Crosstalk between nonclassical monocytes and alveolar macrophages mediates transplant ischemia-reperfusion injury through classical monocyte recruitment

JCI Insight(2021)10.1172/jci.insight.147282

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0DataRank · unranked

68 citations

Emilia Lecuona, Qiang Wu, Wenbin Yang, Felix Nunez-Santana, Mahzad Akbarpour +16 more

Decoding the protein composition of whole nucleosomes with Nuc-MS

Nature Methods(2021)10.1038/s41592-020-01052-9

N/A

0DataRank · unranked

67 citations

Kevin Jooß, Marc A. Morgan, Andrea Piunti, Matthew J. Meiners, Jared O. Kafader +9 more

UBR7 acts as a histone chaperone for post‐nucleosomal histone H3

The EMBO Journal(2021)10.15252/embj.2021108307

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0DataRank · unranked

26 citations

Kizhakke Mattada Sathyan, Alexander B. Willis, Sakshi Khurana, Shashank Srivastava, Ewelina Zasadzińska +12 more

Therapeutic targeting of transcriptional elongation in diffuse intrinsic pontine glioma

Neuro-Oncology(2021)10.1093/neuonc/noab009

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0DataRank · unranked

25 citations

Nozomu Takata, Yuki Aoi, Yongzhan Zhang, Emily J. Rendleman, Gavin T. Blyth +12 more

Epigenetic Reprogramming of Host and Viral Genes by Human Cytomegalovirus Infection in Kasumi-3 Myeloid Progenitor Cells at Early Times Postinfection

Journal of Virology(2021)10.1128/jvi.00183-21

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0DataRank · unranked

16 citations

Fatma Ayaloglu Butun, Christian Marinaccio, Matthew J. Schipma, Andrea Piunti, Mark W. Schroeder +5 more

TOP2B Enzymatic Activity on Promoters and Introns Modulates Multiple Oncogenes in Human Gliomas

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-0312

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0DataRank · unranked

9 citations

Junfei Zhao, Lu Wang, Subhas Mukherjee, Daniel Y. Zhang, Víctor A. Arrieta +23 more

Acute perturbation strategies in interrogating RNA polymerase II elongation factor function in gene expression

Genes & Development(2021)10.1101/gad.346106.120

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0DataRank · unranked

52 citations

Yuki Aoi, Avani P. Shah, Marta Iwanaszko, Siddhartha Das, Emily J. Rendleman +5 more

A trivalent nucleosome interaction by PHIP/BRWD2 is disrupted in neurodevelopmental disorders and cancer

Genes & Development(2021)10.1101/gad.348766.121

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0DataRank · unranked

44 citations

Irina K Popova, Anup Vaidya, Jonathan M. Burg, Matthew R. Marunde, Emily J. Rendleman +10 more

A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells

Genome Research(2021)10.1101/gr.275472.121

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0DataRank · unranked

24 citations

Luca Mariani, Gerson Rothschild, Edwin R. Smith, Bryan J. Venters, Thomas R. Blanda +20 more

SPT6 functions in transcriptional pause/release via PAF1C recruitment

Molecular Cell(2022)10.1016/j.molcel.2022.06.037

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0DataRank · unranked

71 citations

Avani P. Shah, Sheetal Ganesan, Shimaa Soliman, Byoung-Kyu Cho, Young Ah Goo +3 more

PALI1 promotes tumor growth through competitive recruitment of PRC2 to G9A-target chromatin for dual epigenetic silencing

Molecular Cell(2022)10.1016/j.molcel.2022.11.010

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0DataRank · unranked

39 citations

Jonathan C. Zhao, Xiaodong Lü, Jung Kim, Andrea Piunti, Ali Shilatifard +2 more

Therapeutic Targeting of EZH2 and BET BRD4 in Pediatric Rhabdoid Tumors

Molecular Cancer Therapeutics(2022)10.1158/1535-7163.mct-21-0646

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0DataRank · unranked

26 citations

Yongzhan Zhang, Ali Zhang, Takahiro Sasaki, Andrea Piunti, Amreena Suri +10 more

A synthetic lethality screen reveals ING5 as a genetic dependency of catalytically dead Set1A/COMPASS in mouse embryonic stem cells

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2118385119

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0DataRank · unranked

13 citations

Christie C. Sze, Caila Ryan, Siddhartha Das, Kaixiang Cao, Delphine Douillet +6 more

Iron Drives Anabolic Metabolism Through Active Histone Demethylation and mTORC1

Research Square(2022)10.21203/rs.3.rs-2042947/v1

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0DataRank · unranked

1 citations

Hsiang‐Chun Chang, Zibo Zhao, Zohra Waxali, Bong Jin Hong, Haimei Chen +21 more

Distinct layers of BRD4-PTEFb reveal bromodomain-independent function in transcriptional regulation

Molecular Cell(2023)10.1016/j.molcel.2023.06.032

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0DataRank · unranked

68 citations

Sarah Gold, Marta Iwanaszko, Benjamin Charles Howard, Lu Wang, Ali Shilatifard +1 more

Epigenetic moonlighting: Catalytic-independent functions of histone modifiers in regulating transcription

Science Advances(2023)10.1126/sciadv.adg6593

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0DataRank · unranked

65 citations

Ali Shilatifard, Marc A. Morgan

Iron drives anabolic metabolism through active histone demethylation and mTORC1

Nature Cell Biology(2023)10.1038/s41556-023-01225-6

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0DataRank · unranked

41 citations

Hsiang‐Chun Chang, Yuki Tatekoshi, Zibo Zhao, Zohra Sattar Waxali, Bong Jin Hong +23 more

Lactate-dependent transcriptional regulation controls mammalian eye morphogenesis

Nature Communications(2023)10.1038/s41467-023-39672-2

N/A

0DataRank · unranked

35 citations

Jason Miska, Marc A. Morgan, Priyam Patel, Leah K. Billingham, Neha Joshi +13 more

Enhancing HIV-1 latency reversal through regulating the elongating RNA Pol II pause-release by a small-molecule disruptor of PAF1C

Science Advances(2023)10.1126/sciadv.adf2468

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0DataRank · unranked

21 citations

William J. Cisneros, Marta Iwanaszko, Yuki Aoi, Sheetal Ganesan, Miriam Walter +7 more

Therapeutic targeting of metabolic vulnerabilities in cancers with MLL3/4-COMPASS epigenetic regulator mutations

Journal of Clinical Investigation(2023)10.1172/jci169993

N/A

0DataRank · unranked

19 citations

Kaixiang Cao, Jun Watanabe, Cassandra N. Philips, Jacob M. Zeidner, Yukitomo Ishi +10 more

ELOA3 : A primate-specific RNA polymerase II elongation factor encoded by a tandem repeat gene cluster

Science Advances(2023)10.1126/sciadv.adj1261

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0DataRank · unranked

6 citations

Saeid Mohammad Parast, Marta Iwanaszko, Yuki Aoi, DongAhn Yoo, Zachary J. Dumar +9 more

Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori Lyt

Microbiology Spectrum(2023)10.1128/spectrum.03144-22

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0DataRank · unranked

7 citations

Ming Li, Fatma Ayaloglu Butun, Qiaolin Hu, Eva Maria Borst, Matthew J. Schipma +7 more

Pyrimidines maintain mitochondrial pyruvate oxidation to support de novo lipogenesis

Science(2024)10.1126/science.adh2771

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0DataRank · unranked

70 citations

Elodie Villa, Colleen R. Reczek, Zibo Zhao, Brendan P. O’Hara, Michael D. Torno +8 more

Profibrotic monocyte-derived alveolar macrophages are expanded in patients with persistent respiratory symptoms and radiographic abnormalities after COVID-19

Nature Immunology(2024)10.1038/s41590-024-01975-x

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0DataRank · unranked

55 citations

Connor Puritz, Karolina J. Senkow, Nikolay S. Markov, Estefani Diaz, Emmy Jonasson +27 more

Release of P-TEFb from the Super Elongation Complex promotes HIV-1 latency reversal

PLoS Pathogens(2024)10.1371/journal.ppat.1012083

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0DataRank · unranked

5 citations

Shimaa Soliman, Miriam Walter, Lacy M. Simons, Daphne Cornish, Simone De Fabritiis +7 more

NELF coordinates Pol II transcription termination and DNA replication initiation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.31.578294

N/A

0DataRank · unranked

4 citations

Yasukazu Daigaku, Yuki Aoi, Qi Fang, Hiroshi Kimura, Ali Shilatifard +3 more

NELF coordinates Pol II transcription termination and DNA replication initiation

Research Square(2024)10.21203/rs.3.rs-3991504/v1

N/A

0DataRank · unranked

2 citations

Chihiro Nakayama, Yasukazu Daigaku, Yuki Aoi, Qi Fang, Hiroshi Kimura +3 more

Release of P-TEFb from the Super Elongation Complex promotes HIV-1 latency reversal

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.01.582881

N/A

0DataRank · unranked

1 citations

Miriam Walter, Shimaa Soliman, Lacy M. Simons, Daphne Cornish, Ariel W T Halle +5 more

Editorial overview: Breaking boundaries: new frontiers in chromatin regulation for cancer therapy

Current Opinion in Genetics & Development(2024)10.1016/j.gde.2024.102255

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0DataRank · unranked

0 citations

Shannon Lauberth, Ali Shilatifard

Integrator promotes the association of TFIID and RNA polymerase II to maintain pluripotency during development

Molecular Cell(2025)10.1016/j.molcel.2025.07.006

N/A

0DataRank · unranked

3 citations

Felipe Beckedorff, Pradeep Reddy Cingaram, Saeid Mohammad Parast, Jingyin Yue, Gary LeRoy +14 more

NELF Regulates a Promoter-Proximal Step Distinct from RNA Pol II Pause-Release

Molecular Cell(2020)10.1016/j.molcel.2020.02.014

N/A

0DataRank · unranked

188 citations

Edwin R. Smith, Avani P. Shah, Emily J. Rendleman, Stacy A. Marshall, Ashley R. Woodfin +4 more

Defective RNA processing and ELOA-mediated transcriptional elongation in reversible cellular senescence suggest aging by transcription

Molecular Cell(2025)10.1016/j.molcel.2025.11.021

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0DataRank · unranked

2 citations

Simai Wang, Marta Iwanaszko, Yue He, Deniz G. Olgun, Sarah Gold +7 more