Shi Huang

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Nature Microbiology(2022)10.1038/s41564-022-01266-x

Top 7%

3.0DataRank

Top 7%191 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +89 more

Papers

Driven by 26 papers — median percentile 93. Top paper: “Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity”.

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Nature Microbiology(2022)10.1038/s41564-022-01266-x

Top 7%

3.0DataRank

Top 7%191 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +89 more

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

Microbiome(2021)10.1186/s40168-021-01083-0

N/A

2.5DataRank · unranked

64 citations

Pedro Belda‐Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell +30 more

OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438427

N/A

0.752DataRank · unranked

20 citations

Shi Huang, Antonio G. González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

mSystems(2022)10.1128/msystems.00167-22

N/A

0.727DataRank · unranked

126 citations

Shi Huang, Antonio González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.238444

N/A

0.546DataRank · unranked

37 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Clarisse Marotz, Se Jin Song +31 more

Identifying and Predicting Novelty in Microbiome Studies

mBio(2018)10.1128/mbio.02099-18

N/A

0.533DataRank · unranked

34 citations

Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Johannes B. Goll +8 more

SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp.

mSystems(2022)10.1128/msystems.01411-21

N/A

0.528DataRank · unranked

11 citations

Rodolfo A. Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine +35 more

Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.04.446988

N/A

0.330DataRank · unranked

8 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +45 more

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

mBio(2025)10.1128/mbio.04015-24

N/A

0.208DataRank · unranked

3 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia +60 more

Chromatin becomes hot in cancer pathogenesis and therapy

Trends in Genetics(2000)10.1016/s0168-9525(00)01999-5

N/A

0.116DataRank · unranked

1 citations

Shi Huang

Challenges in Benchmarking Metagenomic Profilers

Research Square(2020)10.21203/rs.3.rs-109702/v1

N/A

0DataRank · unranked

0 citations

Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen +6 more

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome

Microbiome(2021)10.1186/s40168-021-01102-0

N/A

0DataRank · unranked

63 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +10 more

Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

Genome Research(2021)10.1101/gr.275777.121

N/A

0DataRank · unranked

45 citations

Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri +18 more

Challenges in Benchmarking Metagenomic Profilers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.14.382994

N/A

0DataRank · unranked

4 citations

Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri +6 more

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

medRxiv(2020)10.1101/2020.11.19.20234229

N/A

0DataRank · unranked

16 citations

Pedro Belda‐Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrell +30 more

Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides

medRxiv(2021)10.1101/2021.08.10.21255754

N/A

0DataRank · unranked

1 citations

Jordan N. Kohn, Emily A. Troyer, Kelly C. Weldon, Shi Huang, Anupriya Tripathi +5 more

Universal adaptive evolution strategy of probiotic Lactobacillus plantarum to gut selection pressure from humans, mice and zebrafish

Research Square(2021)10.21203/rs.3.rs-106737/v1

N/A

0DataRank · unranked

0 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +9 more

Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides

Research Square(2021)10.21203/rs.3.rs-829379/v1

N/A

0DataRank · unranked

0 citations

Gajender Aleti, Jordan N. Kohn, Emily A. Troyer, Kelly C. Weldon, Shi Huang +5 more

Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

mSystems(2020)10.1128/msystems.00150-20

N/A

0DataRank · unranked

26 citations

Gongchao Jing, Zheng Sun, Lu Liu, Zhenjiang Zech Xu, Daniel McDonald +9 more

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

mSystems(2020)10.1128/msystems.00630-19

N/A

0DataRank · unranked

161 citations

Niina Haiminen, Anna Paola Carrieri, Rebecca Hu, Lingjing Jiang, Laxmi Parida +11 more

Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides

BMC Microbiology(2022)10.1186/s12866-022-02483-4

N/A

0DataRank · unranked

20 citations

Jordan N. Kohn, Emily A. Troyer, Kelly C. Weldon, Shi Huang, Anupriya Tripathi +5 more

Limited microbiome differences in captive and semi-wild primate populations consuming similar diets

FEMS Microbiology Ecology(2022)10.1093/femsec/fiac098

N/A

0DataRank · unranked

11 citations

Karli Watson, Shi Huang, Lauren J. N. Brent, Michael L. Platt, Julie E. Horvath +7 more

Removal of false positives in metagenomics-based taxonomy profiling via targeting Type IIB restriction sites

Nature Communications(2023)10.1038/s41467-023-41099-8

N/A

0DataRank · unranked

38 citations

Jiang Liu, Meng Zhang, Tong Wang, Shi Huang, Scott T. Weiss +2 more

Cardiovascular-Kidney-Metabolic Disease Burden in Children and Adults Following Heart Transplantation

JACC Heart Failure(2025)10.1016/j.jchf.2025.102710

N/A

0DataRank · unranked

6 citations

Jaclyn Tamaroff, Eric Farber‐Eger, Nelson Chow, Hasan K. Siddiqi, D. Marshall Brinkley +22 more

Challenges in benchmarking metagenomic profilers

Nature Methods(2021)10.1038/s41592-021-01141-3

N/A

0DataRank · unranked

157 citations

Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri +6 more

Galectin-1 Is a Marker but Not a Mediator of Heart Failure With Preserved Ejection Fraction

Hypertension(2026)10.1161/hypertensionaha.125.26006

N/A

0DataRank · unranked

0 citations

C. Duncan Smart, Daniel J. Fehrenbach, Megan M. Shuey, Pranoy Sangowdar, Lin Zhong +12 more

Shi Huang

Indexed papers

Top data-sharing exemplar

Papers